Wall clock time and date at job start Mon Mar 30 2020 02:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.99856 * 2 1 4 4 C 1.38216 * 120.00028 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00160 * 0.02877 * 4 3 2 6 6 C 1.38222 * 119.99551 * 359.76035 * 5 4 3 7 7 C 1.50697 * 119.99704 * 180.25433 * 6 5 4 8 8 H 1.09003 * 109.46678 * 145.21268 * 7 6 5 9 9 C 1.52996 * 109.47503 * 265.21217 * 7 6 5 10 10 N 1.46501 * 109.47328 * 25.21641 * 7 6 5 11 11 C 1.34774 * 120.00471 * 154.99737 * 10 7 6 12 12 O 1.21283 * 119.99862 * 359.97438 * 11 10 7 13 13 C 1.50694 * 120.00043 * 179.97438 * 11 10 7 14 14 C 1.53001 * 109.47045 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.47341 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99667 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99685 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00580 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99515 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47074 * 89.99742 * 19 17 15 21 21 H 1.48492 * 109.47019 * 209.99659 * 19 17 15 22 22 H 1.48503 * 109.47045 * 329.99937 * 19 17 15 23 23 C 1.38213 * 120.00222 * 180.02562 * 2 1 3 24 24 C 1.50706 * 119.99863 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.46896 * 269.97460 * 1 2 3 26 26 H 1.08994 * 109.47489 * 29.97645 * 1 2 3 27 27 H 1.09002 * 109.46869 * 149.98274 * 1 2 3 28 28 H 1.08004 * 120.00139 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.99831 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.00273 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.46926 * 300.00000 * 9 7 6 32 32 H 1.09002 * 109.46988 * 59.99778 * 9 7 6 33 33 H 1.08997 * 109.47567 * 180.02562 * 9 7 6 34 34 H 0.97006 * 119.99563 * 334.99598 * 10 7 6 35 35 H 1.08997 * 109.47529 * 299.99765 * 13 11 10 36 36 H 1.08998 * 109.47466 * 60.00649 * 13 11 10 37 37 H 1.08999 * 109.47450 * 300.00515 * 14 13 11 38 38 H 1.09000 * 109.47354 * 59.99909 * 14 13 11 39 39 H 0.96999 * 119.99677 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46953 * 89.99941 * 24 23 2 41 41 H 1.09000 * 109.47318 * 209.99539 * 24 23 2 42 42 H 1.09000 * 109.47161 * 330.00169 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0049 7 6 4.3342 -2.5020 0.0106 8 1 3.7845 -3.2363 0.5996 9 6 4.4859 -3.0097 -1.4247 10 7 5.6602 -2.2977 0.5990 11 6 6.3104 -3.3308 1.1704 12 8 5.7976 -4.4295 1.1978 13 6 7.6746 -3.1207 1.7751 14 6 8.1862 -4.4426 2.3511 15 6 9.5502 -4.2324 2.9564 16 1 10.0067 -3.2539 2.9323 17 6 10.2157 -5.2896 3.5401 18 7 9.6600 -6.4812 3.5690 19 14 11.9068 -5.0291 4.2898 20 1 11.7620 -4.6538 5.7193 21 1 12.6934 -6.2843 4.1848 22 1 12.6092 -3.9423 3.5613 23 6 2.1981 -1.1969 -0.0005 24 6 1.4446 -2.5021 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3633 -0.8899 -0.5141 28 1 1.6582 2.1327 0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3518 0.0001 0.0005 31 1 3.4993 -3.1618 -1.8624 32 1 5.0354 -2.2754 -2.0136 33 1 5.0305 -3.9539 -1.4205 34 1 6.0702 -1.4188 0.5774 35 1 8.3627 -2.7694 1.0063 36 1 7.6090 -2.3786 2.5707 37 1 7.4982 -4.7945 3.1198 38 1 8.2519 -5.1845 1.5553 39 1 10.1285 -7.2249 3.9792 40 1 1.2626 -2.8165 -1.0282 41 1 2.0339 -3.2619 0.5128 42 1 0.4924 -2.3719 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291634908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:50 Heat of formation + Delta-G solvation = -37.127380 kcal Electronic energy + Delta-G solvation = -20707.374541 eV Core-core repulsion = 17651.290808 eV Total energy + Delta-G solvation = -3056.083733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.36609 -38.90437 -35.63315 -33.61059 -33.41240 -32.25145 -30.95121 -29.50497 -27.81019 -26.53038 -25.72106 -23.79017 -21.84880 -21.17192 -20.05377 -19.53582 -17.12671 -16.60014 -16.11348 -15.52334 -15.14522 -14.91238 -14.58547 -14.46190 -14.37524 -13.59243 -13.39749 -13.17223 -13.06748 -12.88177 -12.73698 -12.27756 -12.23334 -12.16606 -12.01266 -11.81935 -11.50255 -11.13459 -11.06293 -10.91529 -10.67399 -10.57490 -9.93177 -9.64136 -9.16019 -9.01946 -8.89812 -8.72402 -8.64752 -8.30143 -5.94350 -3.98614 1.16741 1.18715 3.28352 3.34512 3.40193 3.42736 3.48691 3.60922 4.44705 4.49044 4.58620 4.70418 4.81533 5.00510 5.07155 5.19954 5.31980 5.33365 5.40556 5.41900 5.45458 5.46419 5.56100 5.62904 5.67618 5.76706 5.90424 5.99131 6.02526 6.22331 6.25699 6.27059 6.32018 6.34819 6.46647 6.83133 6.83860 6.92246 7.76440 7.88884 7.91304 8.09396 8.40897 8.81176 9.10093 9.64793 11.16611 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033737 B = 0.003166 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.754281 B = 8842.929983 C = 9243.033958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.081 4.081 7 C 0.179 3.821 8 H 0.098 0.902 9 C -0.156 4.156 10 N -0.740 5.740 11 C 0.511 3.489 12 O -0.534 6.534 13 C -0.131 4.131 14 C 0.037 3.963 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.077 4.077 24 C -0.124 4.124 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.395 0.605 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.444 15.801 -9.937 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.136 4.136 6 C -0.081 4.081 7 C 0.074 3.926 8 H 0.116 0.884 9 C -0.214 4.214 10 N -0.396 5.396 11 C 0.300 3.700 12 O -0.409 6.409 13 C -0.171 4.171 14 C 0.000 4.000 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.077 4.077 24 C -0.180 4.180 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.777 14.782 -9.850 25.131 hybrid contribution 1.220 0.683 0.415 1.458 sum -16.558 15.465 -9.435 24.543 Atomic orbital electron populations 1.20819 0.91275 1.02751 1.02346 1.19735 0.95929 0.92519 1.00335 1.20992 0.94274 0.97320 1.01455 1.21070 0.94274 0.97836 1.00341 1.20885 0.99749 0.91955 1.01031 1.19854 0.93293 0.94814 1.00156 1.19744 0.83998 0.93761 0.95112 0.88394 1.22131 1.02131 1.02003 0.95167 1.46438 1.18730 1.13091 1.61337 1.21560 0.88257 0.83673 0.76516 1.90658 1.68396 1.24562 1.57325 1.21871 0.90665 1.04282 1.00236 1.18894 0.95246 0.89475 0.96399 1.21230 1.02281 0.95397 1.37593 0.92628 1.25026 0.97945 0.95221 0.96210 1.70000 1.38065 1.00305 1.44481 0.86595 0.84274 0.77535 0.79563 1.20683 1.21226 1.19898 1.19527 0.92647 0.95139 1.00397 1.20952 1.00154 0.94403 1.02539 0.91162 0.91668 0.91244 0.86229 0.86001 0.86068 0.91900 0.92485 0.91323 0.76895 0.90265 0.90281 0.95830 0.95806 0.92969 0.90902 0.90738 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.19 36.01 0.33 -0.48 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.12 9.70 -39.58 -0.38 -1.51 16 4 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 5 C -0.12 -1.25 9.23 -39.58 -0.37 -1.62 16 6 C -0.08 -0.94 5.06 -104.62 -0.53 -1.47 16 7 C 0.18 2.40 2.28 -69.08 -0.16 2.24 16 8 H 0.10 1.49 5.60 -51.93 -0.29 1.20 16 9 C -0.16 -1.94 9.47 37.16 0.35 -1.59 16 10 N -0.74 -10.90 5.00 -54.94 -0.27 -11.18 16 11 C 0.51 10.00 7.79 -10.99 -0.09 9.91 16 12 O -0.53 -12.62 15.64 5.56 0.09 -12.53 16 13 C -0.13 -2.69 5.64 -27.89 -0.16 -2.85 16 14 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 15 C -0.53 -15.09 9.11 -34.44 -0.31 -15.41 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 23 C -0.08 -0.82 5.88 -104.62 -0.62 -1.44 16 24 C -0.12 -1.15 8.57 36.01 0.31 -0.84 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.07 0.44 6.70 -51.93 -0.35 0.09 16 28 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.12 1.12 6.08 -52.49 -0.32 0.80 16 31 H 0.06 0.67 7.92 -51.93 -0.41 0.26 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.40 4.75 6.21 -40.82 -0.25 4.49 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.77 6.02 -51.93 -0.31 0.46 16 42 H 0.07 0.54 6.70 -51.93 -0.35 0.19 16 LS Contribution 342.90 15.07 5.17 5.17 Total: -1.00 -34.11 342.90 -8.62 -42.72 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.47 Total: 1.41 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.85 Total: -15.49 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.46 Total: -38.09 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.11 -8.62 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291634908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.597 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds