Wall clock time and date at job start Mon Mar 30 2020 02:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38255 * 119.99856 * 2 1 4 4 C 1.38216 * 120.00028 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00160 * 0.02877 * 4 3 2 6 6 C 1.38222 * 119.99551 * 359.76035 * 5 4 3 7 7 C 1.50697 * 119.99704 * 180.25433 * 6 5 4 8 8 H 1.09003 * 109.46678 * 145.21268 * 7 6 5 9 9 C 1.52996 * 109.47503 * 265.21217 * 7 6 5 10 10 N 1.46501 * 109.47328 * 25.21641 * 7 6 5 11 11 C 1.34774 * 120.00471 * 154.99737 * 10 7 6 12 12 O 1.21283 * 119.99862 * 359.97438 * 11 10 7 13 13 C 1.50694 * 120.00043 * 179.97438 * 11 10 7 14 14 C 1.53001 * 109.47045 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.47341 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99667 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99685 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00580 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99515 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47074 * 89.99742 * 19 17 15 21 21 H 1.48492 * 109.47019 * 209.99659 * 19 17 15 22 22 H 1.48503 * 109.47045 * 329.99937 * 19 17 15 23 23 C 1.38213 * 120.00222 * 180.02562 * 2 1 3 24 24 C 1.50706 * 119.99863 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.46896 * 269.97460 * 1 2 3 26 26 H 1.08994 * 109.47489 * 29.97645 * 1 2 3 27 27 H 1.09002 * 109.46869 * 149.98274 * 1 2 3 28 28 H 1.08004 * 120.00139 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.99831 * 179.97438 * 4 3 2 30 30 H 1.07997 * 120.00273 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.46926 * 300.00000 * 9 7 6 32 32 H 1.09002 * 109.46988 * 59.99778 * 9 7 6 33 33 H 1.08997 * 109.47567 * 180.02562 * 9 7 6 34 34 H 0.97006 * 119.99563 * 334.99598 * 10 7 6 35 35 H 1.08997 * 109.47529 * 299.99765 * 13 11 10 36 36 H 1.08998 * 109.47466 * 60.00649 * 13 11 10 37 37 H 1.08999 * 109.47450 * 300.00515 * 14 13 11 38 38 H 1.09000 * 109.47354 * 59.99909 * 14 13 11 39 39 H 0.96999 * 119.99677 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46953 * 89.99941 * 24 23 2 41 41 H 1.09000 * 109.47318 * 209.99539 * 24 23 2 42 42 H 1.09000 * 109.47161 * 330.00169 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2718 0.0001 0.0005 6 6 3.5807 -1.1969 0.0049 7 6 4.3342 -2.5020 0.0106 8 1 3.7845 -3.2363 0.5996 9 6 4.4859 -3.0097 -1.4247 10 7 5.6602 -2.2977 0.5990 11 6 6.3104 -3.3308 1.1704 12 8 5.7976 -4.4295 1.1978 13 6 7.6746 -3.1207 1.7751 14 6 8.1862 -4.4426 2.3511 15 6 9.5502 -4.2324 2.9564 16 1 10.0067 -3.2539 2.9323 17 6 10.2157 -5.2896 3.5401 18 7 9.6600 -6.4812 3.5690 19 14 11.9068 -5.0291 4.2898 20 1 11.7620 -4.6538 5.7193 21 1 12.6934 -6.2843 4.1848 22 1 12.6092 -3.9423 3.5613 23 6 2.1981 -1.1969 -0.0005 24 6 1.4446 -2.5021 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3633 -0.8899 -0.5141 28 1 1.6582 2.1327 0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3518 0.0001 0.0005 31 1 3.4993 -3.1618 -1.8624 32 1 5.0354 -2.2754 -2.0136 33 1 5.0305 -3.9539 -1.4205 34 1 6.0702 -1.4188 0.5774 35 1 8.3627 -2.7694 1.0063 36 1 7.6090 -2.3786 2.5707 37 1 7.4982 -4.7945 3.1198 38 1 8.2519 -5.1845 1.5553 39 1 10.1285 -7.2249 3.9792 40 1 1.2626 -2.8165 -1.0282 41 1 2.0339 -3.2619 0.5128 42 1 0.4924 -2.3719 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291634908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:50 Heat of formation + Delta-G solvation = -57.778093 kcal Electronic energy + Delta-G solvation = -20708.270023 eV Core-core repulsion = 17651.290808 eV Total energy + Delta-G solvation = -3056.979215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37557 -40.22104 -36.83908 -35.54518 -34.31893 -33.52565 -32.69118 -30.64743 -28.54221 -27.68013 -27.21332 -24.97105 -23.54293 -22.08092 -21.22044 -20.83999 -18.88702 -17.80843 -17.55268 -16.59122 -16.52311 -16.47357 -16.09411 -15.48889 -15.26910 -14.89244 -14.61174 -14.29660 -14.19444 -13.81957 -13.72382 -13.65330 -13.40089 -13.22541 -13.10972 -12.88449 -12.81512 -12.61689 -12.47276 -12.41022 -11.92375 -11.77666 -11.65019 -11.54087 -11.30494 -10.74351 -10.57191 -10.18856 -9.53469 -9.43438 -8.18005 -6.32130 0.39259 0.44896 1.41914 1.44829 1.55754 1.70741 2.21052 2.44479 2.79103 3.14895 3.54126 3.88337 3.98807 4.00356 4.12524 4.21754 4.26889 4.35826 4.47546 4.50372 4.55292 4.62573 4.73876 4.75637 4.83268 4.84454 4.88678 4.97816 5.01179 5.08454 5.13749 5.28249 5.32818 5.42699 5.49892 5.59125 5.63174 5.66962 5.75982 5.85543 6.11781 6.17664 6.57624 6.86238 7.32637 7.38198 8.94717 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033737 B = 0.003166 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.754281 B = 8842.929983 C = 9243.033958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.125 4.125 4 C -0.120 4.120 5 C -0.129 4.129 6 C -0.098 4.098 7 C 0.180 3.820 8 H 0.075 0.925 9 C -0.150 4.150 10 N -0.717 5.717 11 C 0.513 3.487 12 O -0.585 6.585 13 C -0.120 4.120 14 C 0.043 3.957 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.255 1.255 23 C -0.091 4.091 24 C -0.124 4.124 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.131 0.869 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.412 0.588 35 H 0.105 0.895 36 H 0.103 0.897 37 H -0.018 1.018 38 H -0.017 1.017 39 H 0.263 0.737 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.320 19.095 -10.323 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.148 4.148 6 C -0.098 4.098 7 C 0.075 3.925 8 H 0.093 0.907 9 C -0.208 4.208 10 N -0.372 5.372 11 C 0.302 3.698 12 O -0.465 6.465 13 C -0.160 4.160 14 C 0.005 3.995 15 C -0.581 4.581 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.179 1.179 23 C -0.091 4.091 24 C -0.180 4.180 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.251 0.749 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.000 1.000 38 H 0.001 0.999 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.666 18.151 -10.261 27.329 hybrid contribution 1.076 -0.293 0.504 1.224 sum -16.590 17.858 -9.757 26.255 Atomic orbital electron populations 1.20870 0.89501 1.03798 1.02964 1.20065 0.97360 0.92189 0.99604 1.21366 0.94471 0.98168 1.00248 1.21377 0.94685 0.98258 0.99489 1.21065 1.00399 0.92008 1.01290 1.19722 0.93740 0.93994 1.02351 1.19760 0.82876 0.94796 0.95036 0.90683 1.22064 1.03012 1.00834 0.94868 1.46168 1.18957 1.12602 1.59451 1.21333 0.88076 0.83800 0.76624 1.90646 1.69446 1.26775 1.59602 1.21649 0.91737 1.01025 1.01566 1.18678 0.94728 0.91912 0.94137 1.21718 1.02747 0.96325 1.37330 0.90613 1.26147 1.02919 0.94736 0.96686 1.70180 1.40330 1.01571 1.45690 0.85315 0.78208 0.77866 0.78817 1.19711 1.21145 1.17876 1.19731 0.92494 0.96168 1.00722 1.20961 1.00350 0.93516 1.03147 0.90647 0.90163 0.90746 0.83872 0.83731 0.85105 0.90100 0.91188 0.94038 0.74930 0.87697 0.87896 0.99993 0.99854 0.92852 0.89853 0.92616 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.19 71.24 0.65 -0.66 16 2 C -0.09 -1.57 5.88 -19.87 -0.12 -1.68 16 3 C -0.12 -1.92 9.70 22.27 0.22 -1.71 16 4 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 5 C -0.13 -2.49 9.23 22.27 0.21 -2.28 16 6 C -0.10 -2.19 5.06 -19.87 -0.10 -2.29 16 7 C 0.18 4.87 2.28 44.24 0.10 4.97 16 8 H 0.08 2.41 5.60 -2.39 -0.01 2.40 16 9 C -0.15 -3.73 9.47 71.98 0.68 -3.05 16 10 N -0.72 -20.88 5.00 -446.11 -2.23 -23.11 16 11 C 0.51 20.55 7.79 87.66 0.68 21.23 16 12 O -0.59 -29.32 15.64 -3.04 -0.05 -29.36 16 13 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 14 C 0.04 2.44 4.26 29.85 0.13 2.57 16 15 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16 16 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 17 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 18 N -0.94 -60.16 13.29 21.45 0.28 -59.88 16 19 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 23 C -0.09 -1.85 5.88 -19.86 -0.12 -1.97 16 24 C -0.12 -2.23 8.57 71.24 0.61 -1.62 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 27 H 0.07 0.77 6.70 -2.39 -0.02 0.76 16 28 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.13 2.11 6.08 -2.91 -0.02 2.10 16 31 H 0.08 1.69 7.92 -2.39 -0.02 1.67 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.41 9.21 6.21 -92.70 -0.58 8.63 16 35 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 36 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 37 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 38 H -0.02 -1.09 8.10 -2.39 -0.02 -1.10 16 39 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.22 6.02 -2.39 -0.01 1.20 16 42 H 0.08 1.22 6.70 -2.39 -0.02 1.21 16 Total: -1.00 -77.30 342.90 4.50 -72.80 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.43 Total: 16.88 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 4.03 Total: -24.06 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.94 Total: -82.99 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -77.30 4.50 -72.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291634908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.017 kcal (2) G-P(sol) polarization free energy of solvation -77.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds