Wall clock time and date at job start Mon Mar 30 2020 02:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 120.00175 * 2 1 4 4 C 1.38216 * 119.99871 * 179.70105 * 3 2 1 5 5 C 1.38253 * 120.00026 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.00443 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00526 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47385 * 212.56704 * 7 6 5 9 9 C 1.52998 * 109.47357 * 92.56209 * 7 6 5 10 10 N 1.46504 * 109.47018 * 332.56521 * 7 6 5 11 11 C 1.34773 * 119.99738 * 207.16472 * 10 7 6 12 12 O 1.21278 * 120.00729 * 359.97438 * 11 10 7 13 13 C 1.50702 * 119.99521 * 179.97438 * 11 10 7 14 14 C 1.53008 * 109.46903 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47029 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99454 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99670 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00359 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99739 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47420 * 59.99737 * 19 17 15 21 21 H 1.48497 * 109.47274 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46883 * 299.99749 * 19 17 15 23 23 C 1.38219 * 119.99565 * 179.72164 * 2 1 3 24 24 C 1.50701 * 120.00180 * 0.28019 * 23 2 1 25 25 H 1.09000 * 109.47456 * 90.00158 * 1 2 3 26 26 H 1.09002 * 109.47483 * 210.00173 * 1 2 3 27 27 H 1.09000 * 109.47001 * 330.00417 * 1 2 3 28 28 H 1.08002 * 119.99791 * 359.71807 * 3 2 1 29 29 H 1.08000 * 119.99869 * 180.02562 * 4 3 2 30 30 H 1.08004 * 119.99890 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47277 * 300.00562 * 9 7 6 32 32 H 1.09001 * 109.47102 * 60.00055 * 9 7 6 33 33 H 1.08997 * 109.47188 * 179.97438 * 9 7 6 34 34 H 0.96996 * 119.99692 * 27.15801 * 10 7 6 35 35 H 1.08998 * 109.47024 * 299.99302 * 13 11 10 36 36 H 1.09002 * 109.47603 * 59.99892 * 13 11 10 37 37 H 1.08991 * 109.47415 * 299.99814 * 14 13 11 38 38 H 1.09004 * 109.46628 * 60.00545 * 14 13 11 39 39 H 0.96999 * 119.99948 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.46790 * 90.00028 * 24 23 2 41 41 H 1.09003 * 109.46589 * 209.99452 * 24 23 2 42 42 H 1.08996 * 109.46941 * 329.99888 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0062 5 6 4.2716 -0.0001 0.0130 6 6 3.5806 -1.1970 0.0130 7 6 4.3340 -2.5021 0.0198 8 1 3.7681 -3.2513 -0.5339 9 6 4.5266 -2.9724 1.4630 10 7 5.6427 -2.3138 -0.6111 11 6 6.2568 -3.3523 -1.2118 12 8 5.7264 -4.4428 -1.2297 13 6 7.6028 -3.1584 -1.8614 14 6 8.0738 -4.4835 -2.4641 15 6 9.4195 -4.2895 -3.1143 16 1 9.8917 -3.3182 -3.0987 17 6 10.0477 -5.3518 -3.7289 18 7 9.4724 -6.5342 -3.7483 19 14 11.7160 -5.1115 -4.5341 20 1 12.6961 -4.6553 -3.5159 21 1 12.1731 -6.3975 -5.1192 22 1 11.6054 -4.0906 -5.6069 23 6 2.1980 -1.1970 0.0058 24 6 1.4444 -2.5021 0.0058 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1326 -0.0046 29 1 4.1205 2.1325 0.0067 30 1 5.3516 -0.0001 0.0183 31 1 5.0925 -2.2232 2.0168 32 1 3.5530 -3.1125 1.9325 33 1 5.0712 -3.9166 1.4678 34 1 6.0671 -1.4417 -0.5966 35 1 7.5216 -2.4092 -2.6489 36 1 8.3221 -2.8235 -1.1140 37 1 8.1551 -5.2324 -1.6765 38 1 7.3546 -4.8186 -3.2115 39 1 9.9146 -7.2817 -4.1804 40 1 1.2671 -2.8192 -1.0219 41 1 2.0314 -3.2605 0.5239 42 1 0.4899 -2.3705 0.5153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291634912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:54 Heat of formation + Delta-G solvation = -37.021001 kcal Electronic energy + Delta-G solvation = -20710.043226 eV Core-core repulsion = 17653.964107 eV Total energy + Delta-G solvation = -3056.079120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.35936 -38.90316 -35.63669 -33.61229 -33.41211 -32.25420 -30.94767 -29.51119 -27.80098 -26.55065 -25.71809 -23.75697 -21.84337 -21.17266 -20.04913 -19.53448 -17.11528 -16.61226 -16.10652 -15.54118 -15.18018 -14.90327 -14.54127 -14.49659 -14.35754 -13.58879 -13.41618 -13.16455 -13.08905 -12.89680 -12.77276 -12.32281 -12.18535 -12.04746 -12.04423 -11.79192 -11.49868 -11.13717 -11.02057 -10.89541 -10.72231 -10.59478 -9.92693 -9.63989 -9.16610 -9.02256 -8.89093 -8.73473 -8.63607 -8.29817 -5.94077 -3.98468 1.16835 1.19396 3.28326 3.35731 3.40028 3.41572 3.47753 3.63244 4.46230 4.49173 4.58201 4.71120 4.81426 4.96218 5.09941 5.22791 5.27617 5.31958 5.40691 5.42618 5.45536 5.51354 5.56930 5.63381 5.65371 5.78114 5.89588 5.96712 6.06997 6.20800 6.25572 6.27012 6.32492 6.34995 6.47165 6.82851 6.84424 6.92299 7.76217 7.89045 7.91455 8.09562 8.41016 8.81263 9.10041 9.64869 11.16860 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033049 B = 0.003176 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.027578 B = 8814.911333 C = 9186.793339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.086 4.086 3 C -0.122 4.122 4 C -0.118 4.118 5 C -0.117 4.117 6 C -0.081 4.081 7 C 0.179 3.821 8 H 0.098 0.902 9 C -0.157 4.157 10 N -0.740 5.740 11 C 0.511 3.489 12 O -0.534 6.534 13 C -0.131 4.131 14 C 0.038 3.962 15 C -0.528 4.528 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.076 4.076 24 C -0.126 4.126 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.395 0.605 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.908 15.918 10.414 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.136 4.136 5 C -0.136 4.136 6 C -0.081 4.081 7 C 0.074 3.926 8 H 0.116 0.884 9 C -0.215 4.215 10 N -0.395 5.395 11 C 0.300 3.700 12 O -0.409 6.409 13 C -0.171 4.171 14 C 0.000 4.000 15 C -0.566 4.566 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.529 5.529 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.077 4.077 24 C -0.182 4.182 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.231 0.769 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.262 14.899 10.327 25.032 hybrid contribution 1.222 0.682 -0.458 1.473 sum -16.039 15.580 9.869 24.442 Atomic orbital electron populations 1.20855 0.91300 1.02770 1.02401 1.19726 0.95938 0.92526 1.00393 1.20989 0.94273 0.97311 1.01419 1.21067 0.94274 0.97836 1.00390 1.20881 0.99746 0.91955 1.00986 1.19868 0.93268 0.94837 1.00160 1.19715 0.84499 0.93947 0.94476 0.88384 1.22159 1.02093 1.02129 0.95164 1.46408 1.20356 1.13479 1.59254 1.21563 0.88060 0.83511 0.76869 1.90657 1.66580 1.25197 1.58499 1.21875 0.90985 1.04313 0.99879 1.18889 0.95508 0.89422 0.96153 1.21195 1.03722 0.95731 1.35947 0.92678 1.25020 0.97791 0.95252 0.96309 1.69986 1.38419 1.00553 1.43899 0.86655 0.84304 0.77301 0.79673 1.20264 1.21288 1.20254 1.19538 0.92664 0.95149 1.00306 1.20984 1.00064 0.94297 1.02895 0.91142 0.91079 0.91724 0.86235 0.86012 0.86092 0.92424 0.91844 0.91356 0.76912 0.90281 0.90265 0.95817 0.95829 0.92906 0.90766 0.90920 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.61 36.00 0.35 -0.48 16 2 C -0.09 -0.83 5.88 -104.62 -0.62 -1.45 16 3 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 4 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 5 C -0.12 -1.25 9.22 -39.59 -0.37 -1.61 16 6 C -0.08 -0.95 5.04 -104.62 -0.53 -1.48 16 7 C 0.18 2.40 2.12 -69.08 -0.15 2.26 16 8 H 0.10 1.50 6.21 -51.93 -0.32 1.18 16 9 C -0.16 -1.93 9.32 37.16 0.35 -1.59 16 10 N -0.74 -10.90 4.98 -54.93 -0.27 -11.17 16 11 C 0.51 10.01 7.81 -10.99 -0.09 9.93 16 12 O -0.53 -12.64 15.61 5.56 0.09 -12.56 16 13 C -0.13 -2.70 5.64 -27.88 -0.16 -2.85 16 14 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 15 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.66 13.29 55.43 0.74 -26.93 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.08 -0.83 5.88 -104.62 -0.62 -1.44 16 24 C -0.13 -1.18 8.80 36.01 0.32 -0.87 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.45 5.94 -51.93 -0.31 0.14 16 27 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 28 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.12 1.12 6.18 -52.48 -0.32 0.79 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.67 7.15 -51.93 -0.37 0.30 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.40 4.75 6.32 -40.82 -0.26 4.49 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.70 5.64 -51.93 -0.29 0.41 16 42 H 0.07 0.53 5.94 -51.93 -0.31 0.22 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -34.12 341.32 -8.51 -42.64 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.37 Total: 1.59 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.81 Total: -15.53 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.46 Total: -38.10 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.09 Total: -12.56 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.12 -8.51 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291634912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.615 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds