Wall clock time and date at job start Mon Mar 30 2020 02:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 120.00175 * 2 1 4 4 C 1.38216 * 119.99871 * 179.70105 * 3 2 1 5 5 C 1.38253 * 120.00026 * 359.97438 * 4 3 2 6 6 C 1.38209 * 120.00443 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00526 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47385 * 212.56704 * 7 6 5 9 9 C 1.52998 * 109.47357 * 92.56209 * 7 6 5 10 10 N 1.46504 * 109.47018 * 332.56521 * 7 6 5 11 11 C 1.34773 * 119.99738 * 207.16472 * 10 7 6 12 12 O 1.21278 * 120.00729 * 359.97438 * 11 10 7 13 13 C 1.50702 * 119.99521 * 179.97438 * 11 10 7 14 14 C 1.53008 * 109.46903 * 179.97438 * 13 11 10 15 15 C 1.50706 * 109.47029 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99454 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99670 * 180.02562 * 15 14 13 18 18 N 1.31509 * 120.00359 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99739 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47420 * 59.99737 * 19 17 15 21 21 H 1.48497 * 109.47274 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46883 * 299.99749 * 19 17 15 23 23 C 1.38219 * 119.99565 * 179.72164 * 2 1 3 24 24 C 1.50701 * 120.00180 * 0.28019 * 23 2 1 25 25 H 1.09000 * 109.47456 * 90.00158 * 1 2 3 26 26 H 1.09002 * 109.47483 * 210.00173 * 1 2 3 27 27 H 1.09000 * 109.47001 * 330.00417 * 1 2 3 28 28 H 1.08002 * 119.99791 * 359.71807 * 3 2 1 29 29 H 1.08000 * 119.99869 * 180.02562 * 4 3 2 30 30 H 1.08004 * 119.99890 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47277 * 300.00562 * 9 7 6 32 32 H 1.09001 * 109.47102 * 60.00055 * 9 7 6 33 33 H 1.08997 * 109.47188 * 179.97438 * 9 7 6 34 34 H 0.96996 * 119.99692 * 27.15801 * 10 7 6 35 35 H 1.08998 * 109.47024 * 299.99302 * 13 11 10 36 36 H 1.09002 * 109.47603 * 59.99892 * 13 11 10 37 37 H 1.08991 * 109.47415 * 299.99814 * 14 13 11 38 38 H 1.09004 * 109.46628 * 60.00545 * 14 13 11 39 39 H 0.96999 * 119.99948 * 180.02562 * 18 17 15 40 40 H 1.09002 * 109.46790 * 90.00028 * 24 23 2 41 41 H 1.09003 * 109.46589 * 209.99452 * 24 23 2 42 42 H 1.08996 * 109.46941 * 329.99888 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0062 5 6 4.2716 -0.0001 0.0130 6 6 3.5806 -1.1970 0.0130 7 6 4.3340 -2.5021 0.0198 8 1 3.7681 -3.2513 -0.5339 9 6 4.5266 -2.9724 1.4630 10 7 5.6427 -2.3138 -0.6111 11 6 6.2568 -3.3523 -1.2118 12 8 5.7264 -4.4428 -1.2297 13 6 7.6028 -3.1584 -1.8614 14 6 8.0738 -4.4835 -2.4641 15 6 9.4195 -4.2895 -3.1143 16 1 9.8917 -3.3182 -3.0987 17 6 10.0477 -5.3518 -3.7289 18 7 9.4724 -6.5342 -3.7483 19 14 11.7160 -5.1115 -4.5341 20 1 12.6961 -4.6553 -3.5159 21 1 12.1731 -6.3975 -5.1192 22 1 11.6054 -4.0906 -5.6069 23 6 2.1980 -1.1970 0.0058 24 6 1.4444 -2.5021 0.0058 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6583 2.1326 -0.0046 29 1 4.1205 2.1325 0.0067 30 1 5.3516 -0.0001 0.0183 31 1 5.0925 -2.2232 2.0168 32 1 3.5530 -3.1125 1.9325 33 1 5.0712 -3.9166 1.4678 34 1 6.0671 -1.4417 -0.5966 35 1 7.5216 -2.4092 -2.6489 36 1 8.3221 -2.8235 -1.1140 37 1 8.1551 -5.2324 -1.6765 38 1 7.3546 -4.8186 -3.2115 39 1 9.9146 -7.2817 -4.1804 40 1 1.2671 -2.8192 -1.0219 41 1 2.0314 -3.2605 0.5239 42 1 0.4899 -2.3705 0.5153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291634912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:53 Heat of formation + Delta-G solvation = -57.761810 kcal Electronic energy + Delta-G solvation = -20710.942615 eV Core-core repulsion = 17653.964107 eV Total energy + Delta-G solvation = -3056.978509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37141 -40.22347 -36.84377 -35.54518 -34.32482 -33.53258 -32.69222 -30.64931 -28.53993 -27.67717 -27.24050 -24.93947 -23.53736 -22.07906 -21.23063 -20.83799 -18.88326 -17.79759 -17.55534 -16.59146 -16.53280 -16.47807 -16.13556 -15.41753 -15.29411 -14.91615 -14.62900 -14.30382 -14.19175 -13.83568 -13.71784 -13.66946 -13.46633 -13.24174 -13.14755 -12.78159 -12.74055 -12.59659 -12.50391 -12.41420 -11.91498 -11.74169 -11.65457 -11.57213 -11.32237 -10.74645 -10.56329 -10.18833 -9.53041 -9.44335 -8.17778 -6.32070 0.38555 0.45235 1.41880 1.46589 1.54294 1.70672 2.21159 2.44632 2.79489 3.14973 3.55294 3.86820 3.99617 4.01954 4.13673 4.24064 4.25997 4.31725 4.45916 4.51392 4.55317 4.59820 4.69139 4.75404 4.81611 4.86535 4.88499 5.00087 5.02434 5.09422 5.12314 5.24913 5.35333 5.43810 5.49702 5.58948 5.63222 5.67199 5.76216 5.85493 6.11932 6.17685 6.57705 6.86098 7.32670 7.38240 8.94744 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033049 B = 0.003176 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.027578 B = 8814.911333 C = 9186.793339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 C -0.124 4.124 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.098 4.098 7 C 0.180 3.820 8 H 0.074 0.926 9 C -0.151 4.151 10 N -0.716 5.716 11 C 0.513 3.487 12 O -0.585 6.585 13 C -0.120 4.120 14 C 0.043 3.957 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.287 1.287 22 H -0.262 1.262 23 C -0.091 4.091 24 C -0.126 4.126 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.132 0.868 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.041 0.959 34 H 0.412 0.588 35 H 0.103 0.897 36 H 0.105 0.895 37 H -0.017 1.017 38 H -0.018 1.018 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.676 19.223 10.788 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.147 4.147 6 C -0.098 4.098 7 C 0.076 3.924 8 H 0.092 0.908 9 C -0.209 4.209 10 N -0.371 5.371 11 C 0.302 3.698 12 O -0.465 6.465 13 C -0.160 4.160 14 C 0.006 3.994 15 C -0.583 4.583 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.213 1.213 22 H -0.187 1.187 23 C -0.092 4.092 24 C -0.182 4.182 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.251 0.749 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.001 0.999 38 H 0.000 1.000 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.040 18.280 10.727 27.195 hybrid contribution 1.049 -0.295 -0.541 1.216 sum -15.991 17.985 10.187 26.133 Atomic orbital electron populations 1.20905 0.89539 1.03842 1.02976 1.20060 0.97369 0.92208 0.99640 1.21364 0.94490 0.98142 1.00223 1.21379 0.94671 0.98279 0.99493 1.21067 1.00430 0.91975 1.01195 1.19742 0.93698 0.94056 1.02322 1.19722 0.83379 0.94875 0.94466 0.90824 1.22094 1.02967 1.01070 0.94758 1.46135 1.20567 1.12952 1.57419 1.21338 0.87824 0.83663 0.77005 1.90645 1.67697 1.27420 1.60728 1.21653 0.92174 1.01033 1.01109 1.18674 0.94789 0.91883 0.94074 1.21693 1.04175 0.96681 1.35717 0.90609 1.26144 1.02609 0.94744 0.96957 1.70171 1.40696 1.01783 1.45111 0.85369 0.78485 0.77446 0.78915 1.18654 1.21305 1.18693 1.19738 0.92545 0.96150 1.00733 1.20994 1.00851 0.93716 1.02651 0.90709 0.90536 0.90184 0.83873 0.83709 0.85052 0.91030 0.90108 0.93946 0.74923 0.87911 0.87671 0.99868 1.00004 0.92841 0.91419 0.91839 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.61 71.23 0.68 -0.67 16 2 C -0.09 -1.59 5.88 -19.87 -0.12 -1.71 16 3 C -0.12 -1.93 9.70 22.27 0.22 -1.71 16 4 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 5 C -0.13 -2.46 9.22 22.27 0.21 -2.26 16 6 C -0.10 -2.20 5.04 -19.87 -0.10 -2.30 16 7 C 0.18 4.88 2.12 44.24 0.09 4.97 16 8 H 0.07 2.38 6.21 -2.39 -0.01 2.36 16 9 C -0.15 -3.72 9.32 71.98 0.67 -3.04 16 10 N -0.72 -20.83 4.98 -446.10 -2.22 -23.05 16 11 C 0.51 20.55 7.81 87.66 0.69 21.23 16 12 O -0.59 -29.36 15.61 -3.02 -0.05 -29.40 16 13 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 14 C 0.04 2.47 4.26 29.85 0.13 2.59 16 15 C -0.54 -31.44 9.11 25.60 0.23 -31.20 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 17 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 18 N -0.94 -60.18 13.29 21.44 0.28 -59.90 16 19 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 20 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 23 C -0.09 -1.88 5.88 -19.86 -0.12 -2.00 16 24 C -0.13 -2.33 8.80 71.24 0.63 -1.71 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 0.80 5.94 -2.39 -0.01 0.78 16 27 H 0.08 0.69 8.09 -2.39 -0.02 0.67 16 28 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.13 2.10 6.18 -2.91 -0.02 2.08 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.69 7.15 -2.39 -0.02 1.67 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.41 9.17 6.32 -92.71 -0.59 8.58 16 35 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 36 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 37 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 38 H -0.02 -1.19 8.10 -2.38 -0.02 -1.21 16 39 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.26 5.64 -2.39 -0.01 1.25 16 42 H 0.09 1.26 5.94 -2.39 -0.01 1.24 16 Total: -1.00 -77.34 341.32 4.53 -72.81 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.43 Total: 17.08 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 4.06 Total: -24.25 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -1.94 Total: -82.95 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.05 Total: -29.40 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -77.34 4.53 -72.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291634912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.045 kcal (2) G-P(sol) polarization free energy of solvation -77.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds