Wall clock time and date at job start Mon Mar 30 2020 02:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00333 * 2 1 4 4 N 1.46899 * 109.47257 * 124.58875 * 3 2 1 5 5 C 1.46899 * 110.99660 * 301.10237 * 4 3 2 6 6 C 1.50701 * 109.47462 * 287.88447 * 5 4 3 7 7 H 1.07998 * 119.99626 * 4.78105 * 6 5 4 8 8 C 1.37876 * 120.00068 * 184.77979 * 6 5 4 9 9 N 1.31512 * 120.00137 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99915 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47016 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47062 * 119.99792 * 10 8 6 13 13 H 1.48500 * 109.46778 * 240.00053 * 10 8 6 14 14 C 1.46902 * 110.99936 * 65.05784 * 4 3 2 15 15 C 1.50697 * 109.47087 * 72.68033 * 14 4 3 16 16 C 1.38169 * 120.02432 * 254.49637 * 15 14 4 17 17 C 1.38245 * 120.05343 * 180.02562 * 16 15 14 18 18 C 1.50704 * 119.94390 * 180.02562 * 17 16 15 19 19 C 1.38293 * 120.11134 * 359.97438 * 17 16 15 20 20 C 1.50703 * 119.97022 * 180.02562 * 19 17 16 21 21 C 1.38117 * 120.05568 * 0.28252 * 19 17 16 22 22 C 1.38709 * 120.03146 * 74.51365 * 15 14 4 23 23 O 1.35901 * 120.05293 * 359.95705 * 22 15 14 24 24 H 1.07998 * 120.00027 * 180.02562 * 1 2 3 25 25 H 1.08000 * 119.99994 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99994 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46688 * 4.58294 * 3 2 1 28 28 H 1.08999 * 109.47170 * 244.59148 * 3 2 1 29 29 H 1.09003 * 109.47080 * 47.89043 * 5 4 3 30 30 H 1.09003 * 109.47067 * 167.88746 * 5 4 3 31 31 H 0.96997 * 119.99785 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47209 * 312.67500 * 14 4 3 33 33 H 1.08997 * 109.46876 * 192.67888 * 14 4 3 34 34 H 1.08000 * 119.97534 * 0.02562 * 16 15 14 35 35 H 1.09004 * 109.46586 * 269.97255 * 18 17 16 36 36 H 1.08997 * 109.47295 * 29.97126 * 18 17 16 37 37 H 1.09002 * 109.47132 * 149.97789 * 18 17 16 38 38 H 1.08997 * 109.46794 * 89.99920 * 20 19 17 39 39 H 1.08999 * 109.47299 * 330.00144 * 20 19 17 40 40 H 1.08993 * 109.47011 * 209.99956 * 20 19 17 41 41 H 1.08001 * 120.02645 * 179.72406 * 21 19 17 42 42 H 0.96710 * 113.99718 * 95.00930 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9893 1.3360 1.1402 5 6 2.2659 1.1850 2.4098 6 6 1.4996 2.4487 2.7047 7 1 1.4828 3.2511 1.9821 8 6 0.8202 2.5805 3.8972 9 7 0.8403 1.6032 4.7770 10 14 -0.1303 4.1466 4.2625 11 1 0.0039 5.0850 3.1194 12 1 -1.5638 3.8189 4.4689 13 1 0.4143 4.7811 5.4898 14 6 4.0297 0.3082 1.0016 15 6 5.0010 0.7187 -0.0750 16 6 4.9714 0.0947 -1.3074 17 6 5.8625 0.4704 -2.2953 18 6 5.8277 -0.2115 -3.6388 19 6 6.7851 1.4717 -2.0531 20 6 7.7547 1.8792 -3.1325 21 6 6.8223 2.0949 -0.8211 22 6 5.9257 1.7231 0.1704 23 8 5.9564 2.3387 1.3816 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3581 2.1319 0.0821 28 1 2.6271 1.3992 -0.9282 29 1 1.5716 0.3481 2.3350 30 1 2.9778 0.9959 3.2133 31 1 0.3626 1.6961 5.6160 32 1 3.5684 -0.6417 0.7318 33 1 4.5605 0.1988 1.9472 34 1 4.2515 -0.6873 -1.4991 35 1 6.4905 -1.0767 -3.6243 36 1 4.8101 -0.5369 -3.8548 37 1 6.1574 0.4859 -4.4089 38 1 7.3170 2.6779 -3.7313 39 1 7.9689 1.0221 -3.7710 40 1 8.6793 2.2322 -2.6760 41 1 7.5459 2.8737 -0.6310 42 1 6.5984 1.9611 1.9986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291841615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:46 Heat of formation + Delta-G solvation = -0.976521 kcal Electronic energy + Delta-G solvation = -21467.958976 eV Core-core repulsion = 18413.442862 eV Total energy + Delta-G solvation = -3054.516114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93000 -37.23547 -36.77340 -33.22736 -32.75080 -31.63845 -31.51183 -28.45075 -26.83425 -26.43745 -25.00556 -23.24179 -22.08224 -20.92829 -20.12766 -18.67941 -17.49213 -16.23521 -16.12518 -15.15841 -15.08993 -14.67527 -14.42523 -14.24156 -14.04676 -13.66604 -13.35312 -13.08156 -12.94960 -12.84358 -12.31254 -12.13033 -12.02292 -11.55032 -11.37714 -11.32628 -11.15926 -10.95196 -10.75589 -10.65065 -10.49467 -10.42391 -10.08320 -9.77630 -9.14887 -8.73069 -8.49972 -8.32862 -8.02883 -7.10089 -5.93436 -3.92563 1.46213 1.51636 2.91507 3.36414 3.43584 3.49420 3.75808 4.50726 4.53967 4.86251 4.88993 5.05798 5.24797 5.29298 5.32439 5.44185 5.50232 5.51419 5.55924 5.58108 5.69140 5.76707 5.81850 5.85264 5.99972 6.07937 6.19445 6.24964 6.37190 6.44520 6.51961 6.68858 6.73894 6.86018 7.07551 7.18364 7.34047 7.38264 7.48010 7.90876 8.09715 8.19465 8.32282 8.65163 9.14331 9.70244 11.17503 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022006 B = 0.004825 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.089213 B = 5801.675637 C = 6500.010331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.178 4.178 3 C 0.089 3.911 4 N -0.513 5.513 5 C 0.193 3.807 6 C -0.493 4.493 7 H 0.061 0.939 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.095 3.905 15 C -0.089 4.089 16 C -0.098 4.098 17 C -0.104 4.104 18 C -0.111 4.111 19 C -0.082 4.082 20 C -0.112 4.112 21 C -0.153 4.153 22 C 0.131 3.869 23 O -0.477 6.477 24 H 0.084 0.916 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.060 0.940 29 H -0.003 1.003 30 H 0.028 0.972 31 H 0.258 0.742 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.123 0.877 42 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.776 -4.363 -14.464 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.198 4.198 3 C -0.039 4.039 4 N -0.235 5.235 5 C 0.068 3.932 6 C -0.532 4.532 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.542 5.542 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.213 1.213 13 H -0.211 1.211 14 C -0.033 4.033 15 C -0.090 4.090 16 C -0.117 4.117 17 C -0.104 4.104 18 C -0.167 4.167 19 C -0.082 4.082 20 C -0.168 4.168 21 C -0.171 4.171 22 C 0.086 3.914 23 O -0.285 6.285 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.014 0.986 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.141 0.859 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.507 -3.568 -14.495 18.848 hybrid contribution -0.674 -0.297 0.730 1.037 sum 10.833 -3.865 -13.765 17.938 Atomic orbital electron populations 1.23682 0.96029 1.01079 1.01174 1.23562 0.96695 0.99860 0.99706 1.21257 0.94554 0.94099 0.93980 1.62392 1.12633 1.44685 1.03793 1.19778 0.92410 0.96618 0.84380 1.21157 1.28671 1.01364 1.02040 0.92098 1.24940 0.96964 0.96489 0.96207 1.69966 1.43619 1.31984 1.08606 0.86502 0.79434 0.83613 0.78251 1.19723 1.21265 1.21119 1.20881 0.92788 0.93485 0.96127 1.20327 0.97489 0.95219 0.95981 1.20821 0.98604 1.00082 0.92209 1.19648 0.96759 0.97768 0.96229 1.20759 1.02294 0.99921 0.93759 1.19498 0.97386 0.96476 0.94870 1.20778 0.97548 1.01519 0.96992 1.21282 1.00490 1.01523 0.93814 1.18254 0.94456 0.91905 0.86795 1.85019 1.63540 1.57566 1.22384 0.89733 0.88503 0.88750 0.90070 0.92165 0.98562 0.95355 0.93197 0.94919 0.90746 0.86216 0.91621 0.91746 0.91627 0.91372 0.91527 0.91840 0.85946 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.25 14.32 29.02 0.42 -2.84 16 2 C -0.18 -3.30 7.40 -36.02 -0.27 -3.57 16 3 C 0.09 1.80 5.54 -4.97 -0.03 1.77 16 4 N -0.51 -11.34 4.60 -238.96 -1.10 -12.44 16 5 C 0.19 5.08 4.58 -4.98 -0.02 5.06 16 6 C -0.49 -14.18 8.69 -34.44 -0.30 -14.48 16 7 H 0.06 1.77 7.35 -52.49 -0.39 1.38 16 8 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 10 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.10 1.77 4.60 -4.98 -0.02 1.74 16 15 C -0.09 -1.46 4.70 -104.47 -0.49 -1.95 16 16 C -0.10 -1.40 8.74 -39.60 -0.35 -1.75 16 17 C -0.10 -1.31 5.88 -104.60 -0.62 -1.92 16 18 C -0.11 -1.04 9.19 36.01 0.33 -0.71 16 19 C -0.08 -1.02 5.88 -104.64 -0.62 -1.63 16 20 C -0.11 -1.02 9.19 36.01 0.33 -0.69 16 21 C -0.15 -2.11 9.64 -39.44 -0.38 -2.49 16 22 C 0.13 2.11 6.68 -39.22 -0.26 1.85 16 23 O -0.48 -7.98 12.85 -19.43 -0.25 -8.23 16 24 H 0.08 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.10 1.77 7.84 -52.49 -0.41 1.36 16 26 H 0.09 1.63 6.73 -52.49 -0.35 1.28 16 27 H 0.08 1.78 6.87 -51.93 -0.36 1.42 16 28 H 0.06 1.13 6.93 -51.93 -0.36 0.77 16 29 H 0.00 -0.09 6.67 -51.93 -0.35 -0.44 16 30 H 0.03 0.81 7.72 -51.93 -0.40 0.41 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.03 0.58 6.00 -51.93 -0.31 0.27 16 33 H 0.07 1.40 7.59 -51.93 -0.39 1.01 16 34 H 0.12 1.57 8.00 -52.49 -0.42 1.15 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 37 H 0.06 0.54 6.69 -51.93 -0.35 0.19 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.52 6.70 -51.93 -0.35 0.17 16 40 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 42 H 0.38 4.45 9.06 45.56 0.41 4.86 16 LS Contribution 343.08 15.07 5.17 5.17 Total: -1.00 -32.51 343.08 -8.52 -41.03 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.69 Total: 3.82 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.37 Total: -20.12 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: -0.36 Total: -38.90 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.25 Total: -8.23 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.51 -8.52 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291841615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.049 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds