Wall clock time and date at job start Mon Mar 30 2020 02:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00333 * 2 1 4 4 N 1.46899 * 109.47257 * 124.58875 * 3 2 1 5 5 C 1.46899 * 110.99660 * 301.10237 * 4 3 2 6 6 C 1.50701 * 109.47462 * 287.88447 * 5 4 3 7 7 H 1.07998 * 119.99626 * 4.78105 * 6 5 4 8 8 C 1.37876 * 120.00068 * 184.77979 * 6 5 4 9 9 N 1.31512 * 120.00137 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99915 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47016 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47062 * 119.99792 * 10 8 6 13 13 H 1.48500 * 109.46778 * 240.00053 * 10 8 6 14 14 C 1.46902 * 110.99936 * 65.05784 * 4 3 2 15 15 C 1.50697 * 109.47087 * 72.68033 * 14 4 3 16 16 C 1.38169 * 120.02432 * 254.49637 * 15 14 4 17 17 C 1.38245 * 120.05343 * 180.02562 * 16 15 14 18 18 C 1.50704 * 119.94390 * 180.02562 * 17 16 15 19 19 C 1.38293 * 120.11134 * 359.97438 * 17 16 15 20 20 C 1.50703 * 119.97022 * 180.02562 * 19 17 16 21 21 C 1.38117 * 120.05568 * 0.28252 * 19 17 16 22 22 C 1.38709 * 120.03146 * 74.51365 * 15 14 4 23 23 O 1.35901 * 120.05293 * 359.95705 * 22 15 14 24 24 H 1.07998 * 120.00027 * 180.02562 * 1 2 3 25 25 H 1.08000 * 119.99994 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99994 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46688 * 4.58294 * 3 2 1 28 28 H 1.08999 * 109.47170 * 244.59148 * 3 2 1 29 29 H 1.09003 * 109.47080 * 47.89043 * 5 4 3 30 30 H 1.09003 * 109.47067 * 167.88746 * 5 4 3 31 31 H 0.96997 * 119.99785 * 179.97438 * 9 8 6 32 32 H 1.08998 * 109.47209 * 312.67500 * 14 4 3 33 33 H 1.08997 * 109.46876 * 192.67888 * 14 4 3 34 34 H 1.08000 * 119.97534 * 0.02562 * 16 15 14 35 35 H 1.09004 * 109.46586 * 269.97255 * 18 17 16 36 36 H 1.08997 * 109.47295 * 29.97126 * 18 17 16 37 37 H 1.09002 * 109.47132 * 149.97789 * 18 17 16 38 38 H 1.08997 * 109.46794 * 89.99920 * 20 19 17 39 39 H 1.08999 * 109.47299 * 330.00144 * 20 19 17 40 40 H 1.08993 * 109.47011 * 209.99956 * 20 19 17 41 41 H 1.08001 * 120.02645 * 179.72406 * 21 19 17 42 42 H 0.96710 * 113.99718 * 95.00930 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9893 1.3360 1.1402 5 6 2.2659 1.1850 2.4098 6 6 1.4996 2.4487 2.7047 7 1 1.4828 3.2511 1.9821 8 6 0.8202 2.5805 3.8972 9 7 0.8403 1.6032 4.7770 10 14 -0.1303 4.1466 4.2625 11 1 0.0039 5.0850 3.1194 12 1 -1.5638 3.8189 4.4689 13 1 0.4143 4.7811 5.4898 14 6 4.0297 0.3082 1.0016 15 6 5.0010 0.7187 -0.0750 16 6 4.9714 0.0947 -1.3074 17 6 5.8625 0.4704 -2.2953 18 6 5.8277 -0.2115 -3.6388 19 6 6.7851 1.4717 -2.0531 20 6 7.7547 1.8792 -3.1325 21 6 6.8223 2.0949 -0.8211 22 6 5.9257 1.7231 0.1704 23 8 5.9564 2.3387 1.3816 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3581 2.1319 0.0821 28 1 2.6271 1.3992 -0.9282 29 1 1.5716 0.3481 2.3350 30 1 2.9778 0.9959 3.2133 31 1 0.3626 1.6961 5.6160 32 1 3.5684 -0.6417 0.7318 33 1 4.5605 0.1988 1.9472 34 1 4.2515 -0.6873 -1.4991 35 1 6.4905 -1.0767 -3.6243 36 1 4.8101 -0.5369 -3.8548 37 1 6.1574 0.4859 -4.4089 38 1 7.3170 2.6779 -3.7313 39 1 7.9689 1.0221 -3.7710 40 1 8.6793 2.2322 -2.6760 41 1 7.5459 2.8737 -0.6310 42 1 6.5984 1.9611 1.9986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291841615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:45 Heat of formation + Delta-G solvation = -22.202092 kcal Electronic energy + Delta-G solvation = -21468.879385 eV Core-core repulsion = 18413.442862 eV Total energy + Delta-G solvation = -3055.436524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06868 -38.83080 -37.94326 -34.89625 -34.43528 -33.07965 -32.55185 -29.88882 -28.51324 -27.56195 -26.41730 -24.89110 -23.13284 -22.68577 -21.36425 -20.18426 -18.68654 -18.31381 -17.36074 -16.89417 -16.38962 -16.06727 -15.94122 -15.76486 -15.33390 -14.93333 -14.58527 -14.40270 -14.08085 -13.81955 -13.62004 -13.53179 -13.15071 -13.05480 -12.87873 -12.70152 -12.58257 -12.37717 -12.28656 -12.26270 -12.09622 -11.95842 -11.80443 -11.36907 -11.09375 -10.58999 -10.21039 -9.59959 -9.11242 -8.86627 -8.15983 -6.24027 0.37925 0.43568 1.38600 1.39937 1.44079 1.53284 2.41596 2.68074 3.15786 3.45112 3.54752 3.88770 3.92863 4.04389 4.08376 4.20191 4.32783 4.43007 4.52324 4.60099 4.63964 4.73175 4.85479 4.87112 4.91253 4.94546 4.99061 5.05660 5.10092 5.22679 5.28954 5.33472 5.35460 5.49190 5.65388 5.70210 5.70541 5.74849 5.90412 6.06871 6.12926 6.45864 6.68481 6.90495 7.02755 7.44011 8.94464 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022006 B = 0.004825 C = 0.004307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.089213 B = 5801.675637 C = 6500.010331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.188 4.188 3 C 0.095 3.905 4 N -0.525 5.525 5 C 0.213 3.787 6 C -0.510 4.510 7 H 0.052 0.948 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.268 1.268 12 H -0.277 1.277 13 H -0.279 1.279 14 C 0.102 3.898 15 C -0.112 4.112 16 C -0.103 4.103 17 C -0.104 4.104 18 C -0.109 4.109 19 C -0.079 4.079 20 C -0.111 4.111 21 C -0.159 4.159 22 C 0.110 3.890 23 O -0.503 6.503 24 H 0.109 0.891 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.056 0.944 28 H 0.076 0.924 29 H -0.023 1.023 30 H -0.003 1.003 31 H 0.263 0.737 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.129 0.871 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.136 0.864 42 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.377 -4.272 -16.707 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.207 4.207 3 C -0.032 4.032 4 N -0.247 5.247 5 C 0.087 3.913 6 C -0.549 4.549 7 H 0.070 0.930 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.193 1.193 12 H -0.202 1.202 13 H -0.205 1.205 14 C -0.026 4.026 15 C -0.113 4.113 16 C -0.121 4.121 17 C -0.105 4.105 18 C -0.166 4.166 19 C -0.079 4.079 20 C -0.167 4.167 21 C -0.177 4.177 22 C 0.065 3.935 23 O -0.314 6.314 24 H 0.127 0.873 25 H 0.106 0.894 26 H 0.127 0.873 27 H 0.075 0.925 28 H 0.094 0.906 29 H -0.005 1.005 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.147 0.853 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.154 0.846 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 12.125 -3.486 -16.756 20.974 hybrid contribution -0.785 -0.355 1.367 1.616 sum 11.340 -3.841 -15.388 19.498 Atomic orbital electron populations 1.23864 0.95968 1.01880 0.99989 1.23529 0.96987 0.99505 1.00717 1.21139 0.94118 0.94289 0.93697 1.62255 1.13116 1.46679 1.02620 1.19353 0.91190 0.95025 0.85732 1.21398 1.29315 1.01924 1.02219 0.93016 1.25779 0.97791 0.99795 0.95915 1.70078 1.44391 1.33939 1.09065 0.85447 0.78228 0.79514 0.78117 1.19279 1.20222 1.20451 1.20795 0.92154 0.92921 0.96694 1.20164 0.97888 0.96921 0.96332 1.20970 0.99310 1.00087 0.91749 1.20046 0.95721 0.97493 0.97192 1.20831 1.03157 1.00580 0.92003 1.19956 0.97440 0.95493 0.95041 1.20860 0.97056 1.02584 0.96206 1.21471 1.00329 1.01988 0.93918 1.18509 0.95511 0.92465 0.87052 1.84953 1.64643 1.58401 1.23434 0.87314 0.89352 0.87284 0.92514 0.90619 1.00505 0.98510 0.92863 0.94124 0.92231 0.85301 0.90004 0.91321 0.90007 0.90461 0.89653 0.90751 0.84615 0.74723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.32 14.32 67.78 0.97 -5.35 16 2 C -0.19 -6.92 7.40 25.65 0.19 -6.73 16 3 C 0.10 3.91 5.54 85.56 0.47 4.38 16 4 N -0.52 -24.00 4.60 -909.94 -4.18 -28.19 16 5 C 0.21 11.72 4.58 85.56 0.39 12.11 16 6 C -0.51 -30.17 8.69 25.60 0.22 -29.95 16 7 H 0.05 3.09 7.35 -2.91 -0.02 3.07 16 8 C 0.00 0.28 5.46 84.65 0.46 0.74 16 9 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 10 Si 0.96 46.11 29.54 68.60 2.03 48.13 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.10 3.91 4.60 85.56 0.39 4.30 16 15 C -0.11 -3.69 4.70 -19.77 -0.09 -3.78 16 16 C -0.10 -2.79 8.74 22.26 0.19 -2.60 16 17 C -0.10 -2.37 5.88 -19.85 -0.12 -2.49 16 18 C -0.11 -1.66 9.19 71.24 0.65 -1.01 16 19 C -0.08 -1.77 5.88 -19.88 -0.12 -1.89 16 20 C -0.11 -1.61 9.19 71.24 0.65 -0.96 16 21 C -0.16 -4.21 9.64 22.36 0.22 -3.99 16 22 C 0.11 3.56 6.68 22.51 0.15 3.71 16 23 O -0.50 -17.51 12.85 -92.44 -1.19 -18.70 16 24 H 0.11 3.28 8.06 -2.91 -0.02 3.26 16 25 H 0.09 3.25 7.84 -2.91 -0.02 3.22 16 26 H 0.11 3.68 6.73 -2.91 -0.02 3.66 16 27 H 0.06 2.57 6.87 -2.39 -0.02 2.55 16 28 H 0.08 2.83 6.93 -2.39 -0.02 2.81 16 29 H -0.02 -1.31 6.67 -2.39 -0.02 -1.33 16 30 H 0.00 -0.20 7.72 -2.39 -0.02 -0.21 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.04 1.46 6.00 -2.39 -0.01 1.45 16 33 H 0.06 2.39 7.59 -2.39 -0.02 2.37 16 34 H 0.13 3.17 8.00 -2.91 -0.02 3.15 16 35 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.08 1.00 6.69 -2.39 -0.02 0.98 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 0.95 6.70 -2.39 -0.02 0.93 16 40 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 41 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.40 9.89 9.06 -74.05 -0.67 9.21 16 Total: -1.00 -70.98 343.08 1.92 -69.05 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.34 Total: 20.31 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 4.65 Total: -33.48 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -3.90 Total: -85.31 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -1.19 Total: -18.70 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.98 1.92 -69.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291841615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.851 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds