Wall clock time and date at job start Mon Mar 30 2020 02:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.52995 * 109.47120 * 270.21556 * 9 8 2 11 11 N 1.46497 * 109.47046 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00364 * 180.02562 * 11 10 9 13 13 O 1.21289 * 119.99801 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00435 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47252 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47252 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00409 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00225 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00295 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00205 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47144 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47302 * 120.00031 * 20 18 16 23 23 H 1.48496 * 109.47114 * 240.00159 * 20 18 16 24 24 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 25 25 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 26 26 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 27 27 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 29 29 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 31 31 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 32 32 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 33 33 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 34 34 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 35 35 H 1.08997 * 109.47822 * 300.00318 * 10 9 8 36 36 H 1.09005 * 109.47224 * 59.99920 * 10 9 8 37 37 H 0.96999 * 120.00344 * 0.02562 * 11 10 9 38 38 H 1.09005 * 109.46941 * 299.99464 * 14 12 11 39 39 H 1.09000 * 109.47383 * 59.99879 * 14 12 11 40 40 H 1.09010 * 109.47009 * 299.99687 * 15 14 12 41 41 H 1.08996 * 109.47853 * 59.99389 * 15 14 12 42 42 H 0.96991 * 120.00585 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1845 -2.9466 1.4312 11 7 0.4516 -4.2150 1.4262 12 6 0.1098 -4.8006 2.5910 13 8 0.4087 -4.2772 3.6435 14 6 -0.6437 -6.1057 2.5858 15 6 -0.9051 -6.5494 4.0265 16 6 -1.6580 -7.8548 4.0213 17 1 -1.9239 -8.3212 3.0841 18 6 -2.0075 -8.4539 5.2129 19 7 -1.6834 -7.8863 6.3542 20 14 -2.9414 -10.0716 5.2064 21 1 -3.1838 -10.4977 3.8047 22 1 -2.1417 -11.1077 5.9080 23 1 -4.2418 -9.8953 5.9015 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 1.6581 2.1326 0.0004 28 1 4.1204 2.1326 0.0100 29 1 5.3516 0.0002 0.0096 30 1 4.5118 -2.8187 1.0287 31 1 3.7470 -3.2607 -0.5166 32 1 5.2885 -2.3708 -0.5089 33 1 0.4942 -2.3709 -0.5265 34 1 2.0358 -3.2608 -0.5225 35 1 2.1350 -3.0778 1.9484 36 1 0.5935 -2.1879 1.9444 37 1 0.2122 -4.6335 0.5845 38 1 -1.5940 -5.9745 2.0683 39 1 -0.0525 -6.8645 2.0731 40 1 0.0451 -6.6805 4.5444 41 1 -1.4964 -5.7905 4.5388 42 1 -1.9289 -8.3079 7.1924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291871665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:36 Heat of formation + Delta-G solvation = -45.254722 kcal Electronic energy + Delta-G solvation = -20289.193078 eV Core-core repulsion = 17232.756917 eV Total energy + Delta-G solvation = -3056.436161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15827 -38.98968 -35.42831 -33.80654 -33.42370 -32.99647 -31.00342 -29.36361 -27.29985 -26.86240 -25.63272 -23.47100 -21.40617 -20.90327 -20.86433 -19.49796 -16.87437 -16.49629 -16.33760 -15.72736 -15.53148 -15.06428 -14.67926 -14.39984 -14.15520 -13.83766 -13.40754 -13.18105 -13.14424 -13.02092 -12.87637 -12.42570 -12.18540 -12.13585 -11.95098 -11.67508 -11.43275 -11.14329 -11.02059 -10.95512 -10.90376 -10.56589 -9.93767 -9.64310 -9.15789 -9.00734 -8.75289 -8.74270 -8.73379 -8.30668 -5.94586 -3.98906 1.14185 1.17077 3.30091 3.33490 3.40052 3.42896 3.45140 3.65376 4.48367 4.54060 4.55942 4.72332 4.80085 4.85244 4.96281 5.08668 5.17542 5.32601 5.37561 5.40317 5.42413 5.46179 5.53495 5.61296 5.63200 5.69183 5.83158 5.92465 6.05015 6.11163 6.25607 6.27316 6.29846 6.35039 6.49772 6.74884 6.83854 6.92399 7.76604 7.88737 7.92628 8.09341 8.40711 8.82428 9.10218 9.64578 11.16440 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037826 B = 0.002749 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.063521 B =10181.841174 C =10392.794536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.075 4.075 7 C -0.121 4.121 8 C -0.081 4.081 9 C -0.096 4.096 10 C 0.126 3.874 11 N -0.746 5.746 12 C 0.508 3.492 13 O -0.535 6.535 14 C -0.130 4.130 15 C 0.036 3.964 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.397 0.603 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.571 16.446 -18.142 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.074 4.074 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.075 4.075 7 C -0.177 4.177 8 C -0.082 4.082 9 C -0.134 4.134 10 C 0.002 3.998 11 N -0.400 5.400 12 C 0.297 3.703 13 O -0.410 6.410 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.230 0.770 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.772 16.802 -17.150 25.922 hybrid contribution -0.518 -0.896 -0.328 1.086 sum 9.253 15.907 -17.478 25.380 Atomic orbital electron populations 1.20893 0.91151 1.03364 1.02354 1.19788 0.96071 0.92534 0.99055 1.20994 0.94265 0.97387 1.01850 1.21093 0.94313 0.97901 1.00108 1.20987 0.99662 0.91978 1.01852 1.19785 0.93094 0.95536 0.99077 1.20902 0.99670 0.94296 1.02832 1.19389 0.92898 0.94138 1.01749 1.20859 1.00627 0.94662 0.97204 1.21158 0.97022 0.86231 0.95364 1.46222 1.60181 1.24320 1.09286 1.21569 0.78716 0.87295 0.82751 1.90676 1.53914 1.65191 1.31199 1.21860 0.98858 0.91696 1.04554 1.18903 0.97670 0.95796 0.87772 1.21265 1.36302 1.06471 0.92380 0.92560 1.25035 0.96124 0.97644 0.95659 1.70007 1.46572 1.39017 0.97252 0.86537 0.79643 0.83778 0.78010 1.19759 1.21025 1.21032 0.91111 0.90852 0.91450 0.86197 0.86226 0.86199 0.90759 0.91019 0.91635 0.90187 0.89976 0.91780 0.91785 0.76995 0.90276 0.90270 0.95838 0.95835 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.19 36.00 0.33 -0.69 16 2 C -0.07 -0.74 5.88 -104.63 -0.62 -1.36 16 3 C -0.13 -1.18 9.70 -39.58 -0.38 -1.56 16 4 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 5 C -0.13 -1.17 9.70 -39.58 -0.38 -1.56 16 6 C -0.07 -0.74 5.88 -104.62 -0.62 -1.36 16 7 C -0.12 -1.01 9.61 36.01 0.35 -0.67 16 8 C -0.08 -0.83 5.13 -104.62 -0.54 -1.37 16 9 C -0.10 -0.91 4.36 -27.88 -0.12 -1.03 16 10 C 0.13 1.62 5.52 -4.05 -0.02 1.60 16 11 N -0.75 -10.41 5.56 -60.30 -0.33 -10.74 16 12 C 0.51 9.91 7.83 -10.99 -0.09 9.82 16 13 O -0.53 -12.94 15.98 5.55 0.09 -12.85 16 14 C -0.13 -2.65 5.64 -27.89 -0.16 -2.80 16 15 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 16 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.67 5.84 -51.93 -0.30 0.37 16 26 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 28 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.56 5.95 -51.93 -0.31 0.25 16 32 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 33 H 0.08 0.67 6.72 -51.93 -0.35 0.32 16 34 H 0.08 0.68 5.95 -51.93 -0.31 0.37 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.91 7.38 -51.93 -0.38 0.53 16 37 H 0.40 4.20 8.47 -40.82 -0.35 3.85 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 346.60 15.07 5.22 5.22 Total: -1.00 -34.80 346.60 -9.08 -43.88 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.60 Total: -0.02 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -3.17 Total: -15.32 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.40 Total: -37.67 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.80 -9.08 -43.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291871665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.371 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds