Wall clock time and date at job start Mon Mar 30 2020 02:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.52995 * 109.47120 * 270.21556 * 9 8 2 11 11 N 1.46497 * 109.47046 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00364 * 180.02562 * 11 10 9 13 13 O 1.21289 * 119.99801 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00435 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47252 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47252 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00409 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00225 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00295 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00205 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47144 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47302 * 120.00031 * 20 18 16 23 23 H 1.48496 * 109.47114 * 240.00159 * 20 18 16 24 24 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 25 25 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 26 26 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 27 27 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 29 29 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 31 31 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 32 32 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 33 33 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 34 34 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 35 35 H 1.08997 * 109.47822 * 300.00318 * 10 9 8 36 36 H 1.09005 * 109.47224 * 59.99920 * 10 9 8 37 37 H 0.96999 * 120.00344 * 0.02562 * 11 10 9 38 38 H 1.09005 * 109.46941 * 299.99464 * 14 12 11 39 39 H 1.09000 * 109.47383 * 59.99879 * 14 12 11 40 40 H 1.09010 * 109.47009 * 299.99687 * 15 14 12 41 41 H 1.08996 * 109.47853 * 59.99389 * 15 14 12 42 42 H 0.96991 * 120.00585 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1845 -2.9466 1.4312 11 7 0.4516 -4.2150 1.4262 12 6 0.1098 -4.8006 2.5910 13 8 0.4087 -4.2772 3.6435 14 6 -0.6437 -6.1057 2.5858 15 6 -0.9051 -6.5494 4.0265 16 6 -1.6580 -7.8548 4.0213 17 1 -1.9239 -8.3212 3.0841 18 6 -2.0075 -8.4539 5.2129 19 7 -1.6834 -7.8863 6.3542 20 14 -2.9414 -10.0716 5.2064 21 1 -3.1838 -10.4977 3.8047 22 1 -2.1417 -11.1077 5.9080 23 1 -4.2418 -9.8953 5.9015 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5137 26 1 -0.3634 0.8900 0.5139 27 1 1.6581 2.1326 0.0004 28 1 4.1204 2.1326 0.0100 29 1 5.3516 0.0002 0.0096 30 1 4.5118 -2.8187 1.0287 31 1 3.7470 -3.2607 -0.5166 32 1 5.2885 -2.3708 -0.5089 33 1 0.4942 -2.3709 -0.5265 34 1 2.0358 -3.2608 -0.5225 35 1 2.1350 -3.0778 1.9484 36 1 0.5935 -2.1879 1.9444 37 1 0.2122 -4.6335 0.5845 38 1 -1.5940 -5.9745 2.0683 39 1 -0.0525 -6.8645 2.0731 40 1 0.0451 -6.6805 4.5444 41 1 -1.4964 -5.7905 4.5388 42 1 -1.9289 -8.3079 7.1924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291871665.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:36 Heat of formation + Delta-G solvation = -66.808610 kcal Electronic energy + Delta-G solvation = -20290.127725 eV Core-core repulsion = 17232.756917 eV Total energy + Delta-G solvation = -3057.370807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.00284 -40.40615 -36.59620 -35.53628 -34.47963 -34.04167 -32.93037 -30.34846 -28.29733 -27.52309 -27.34295 -24.70985 -23.17977 -21.76347 -21.58431 -20.93766 -18.80138 -17.48916 -17.31637 -17.15114 -16.76103 -16.47387 -16.38021 -15.38928 -15.12038 -15.04529 -14.59437 -14.18952 -14.05913 -13.99366 -13.80391 -13.78119 -13.57957 -13.22357 -13.02690 -12.89980 -12.80742 -12.44885 -12.39027 -12.23084 -11.91052 -11.73031 -11.66253 -11.62395 -11.27450 -10.73489 -10.57406 -10.07072 -9.49672 -9.43424 -8.17333 -6.31392 0.42188 0.46844 1.42855 1.44352 1.57664 1.73110 2.26185 2.45638 2.81817 3.15730 3.80739 3.86074 4.01470 4.05310 4.08244 4.13519 4.19529 4.43344 4.44839 4.53452 4.55490 4.59220 4.64803 4.77748 4.82277 4.83986 4.91712 4.96093 5.01591 5.06698 5.13264 5.34822 5.37691 5.46102 5.53205 5.61037 5.64519 5.66509 5.77943 5.86773 6.15878 6.18551 6.64298 6.87744 7.37041 7.39410 8.95679 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037826 B = 0.002749 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.063521 B =10181.841174 C =10392.794536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 C -0.139 4.139 4 C -0.121 4.121 5 C -0.139 4.139 6 C -0.089 4.089 7 C -0.120 4.120 8 C -0.100 4.100 9 C -0.082 4.082 10 C 0.130 3.870 11 N -0.717 5.717 12 C 0.509 3.491 13 O -0.592 6.592 14 C -0.118 4.118 15 C 0.040 3.960 16 C -0.541 4.541 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.975 3.025 21 H -0.252 1.252 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.418 0.582 38 H 0.106 0.894 39 H 0.106 0.894 40 H -0.019 1.019 41 H -0.019 1.019 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.218 15.848 -20.915 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.088 4.088 3 C -0.157 4.157 4 C -0.139 4.139 5 C -0.157 4.157 6 C -0.089 4.089 7 C -0.176 4.176 8 C -0.100 4.100 9 C -0.119 4.119 10 C 0.006 3.994 11 N -0.370 5.370 12 C 0.298 3.702 13 O -0.473 6.473 14 C -0.158 4.158 15 C 0.003 3.997 16 C -0.579 4.579 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.799 3.201 21 H -0.175 1.175 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.153 0.847 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.256 0.744 38 H 0.124 0.876 39 H 0.124 0.876 40 H -0.001 1.001 41 H -0.001 1.001 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.422 16.207 -20.013 27.422 hybrid contribution -0.350 -0.602 0.522 0.871 sum 9.072 15.605 -19.491 26.565 Atomic orbital electron populations 1.20900 0.90359 1.03154 1.03176 1.20063 0.96894 0.92830 0.99040 1.21280 0.94738 0.97918 1.01736 1.21418 0.94463 0.98758 0.99249 1.21281 1.00667 0.91998 1.01723 1.20059 0.93316 0.96422 0.99068 1.20915 1.00392 0.93836 1.02454 1.19534 0.93279 0.94464 1.02771 1.20755 1.01706 0.94848 0.94634 1.21181 0.95583 0.84905 0.97714 1.45882 1.58413 1.24183 1.08566 1.21393 0.78452 0.87083 0.83306 1.90663 1.56422 1.66571 1.33598 1.21636 1.00968 0.92917 1.00287 1.18703 0.94698 0.94855 0.91467 1.21755 1.35970 1.06814 0.93319 0.90457 1.26164 0.97186 1.02134 0.95152 1.70187 1.48201 1.41306 0.98224 0.85258 0.77710 0.78117 0.79061 1.17484 1.20670 1.20684 0.89694 0.91766 0.90961 0.84653 0.84198 0.84653 0.91757 0.90380 0.90239 0.88637 0.88364 0.93368 0.93374 0.74418 0.87571 0.87561 1.00065 1.00058 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 9.19 71.24 0.65 -1.22 16 2 C -0.09 -1.66 5.88 -19.87 -0.12 -1.78 16 3 C -0.14 -2.40 9.70 22.27 0.22 -2.19 16 4 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 5 C -0.14 -2.40 9.70 22.27 0.22 -2.19 16 6 C -0.09 -1.67 5.88 -19.86 -0.12 -1.79 16 7 C -0.12 -1.87 9.61 71.24 0.68 -1.19 16 8 C -0.10 -1.94 5.13 -19.87 -0.10 -2.04 16 9 C -0.08 -1.41 4.36 29.85 0.13 -1.28 16 10 C 0.13 3.27 5.52 86.38 0.48 3.74 16 11 N -0.72 -18.99 5.56 -463.06 -2.57 -21.56 16 12 C 0.51 19.88 7.83 87.66 0.69 20.57 16 13 O -0.59 -29.95 15.98 -3.06 -0.05 -30.00 16 14 C -0.12 -4.73 5.64 29.85 0.17 -4.56 16 15 C 0.04 2.27 4.26 29.85 0.13 2.40 16 16 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 17 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 18 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 19 N -0.94 -60.16 13.29 21.45 0.28 -59.87 16 20 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 21 H -0.25 -10.51 7.11 99.48 0.71 -9.81 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.11 5.84 -2.39 -0.01 1.10 16 26 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 27 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 28 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.08 5.95 -2.39 -0.01 1.07 16 32 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 33 H 0.10 1.35 6.72 -2.39 -0.02 1.34 16 34 H 0.10 1.37 5.95 -2.39 -0.01 1.36 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 1.39 7.38 -2.38 -0.02 1.37 16 37 H 0.42 7.57 8.47 -92.71 -0.79 6.79 16 38 H 0.11 3.68 8.14 -2.38 -0.02 3.66 16 39 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 40 H -0.02 -1.22 8.10 -2.38 -0.02 -1.24 16 41 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 42 H 0.26 15.69 8.31 -92.72 -0.77 14.92 16 Total: -1.00 -78.96 346.60 3.85 -75.10 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.22 Total: 13.86 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.94 Total: -24.02 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -2.29 Total: -81.43 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.05 Total: -30.00 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -78.96 3.85 -75.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291871665.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.294 kcal (2) G-P(sol) polarization free energy of solvation -78.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds