Wall clock time and date at job start Mon Mar 30 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00140 * 2 1 4 4 N 1.46906 * 109.46960 * 124.13509 * 3 2 1 5 5 C 1.46901 * 111.00206 * 298.50068 * 4 3 2 6 6 C 1.50698 * 109.46741 * 288.38131 * 5 4 3 7 7 H 1.07989 * 120.00470 * 4.87200 * 6 5 4 8 8 C 1.37884 * 119.99428 * 184.87192 * 6 5 4 9 9 N 1.31503 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99426 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47178 * 90.00542 * 10 8 6 12 12 H 1.48509 * 109.46795 * 210.00017 * 10 8 6 13 13 H 1.48500 * 109.47312 * 329.99637 * 10 8 6 14 14 C 1.46901 * 110.99662 * 62.45359 * 4 3 2 15 15 C 1.52997 * 109.47112 * 77.23906 * 14 4 3 16 16 H 1.09003 * 109.47148 * 53.50322 * 15 14 4 17 17 O 1.42899 * 109.47180 * 293.49998 * 15 14 4 18 18 C 1.50706 * 109.47279 * 173.50002 * 15 14 4 19 19 C 1.38232 * 119.99951 * 84.72714 * 18 15 14 20 20 C 1.38229 * 120.00245 * 179.76993 * 19 18 15 21 21 C 1.38240 * 119.99923 * 0.50578 * 20 19 18 22 22 C 1.50698 * 120.00513 * 179.72943 * 21 20 19 23 23 C 1.38238 * 119.99461 * 359.74479 * 21 20 19 24 24 C 1.38230 * 120.00498 * 0.02562 * 23 21 20 25 25 H 1.07999 * 120.00026 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.00081 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99654 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46872 * 4.14095 * 3 2 1 29 29 H 1.08990 * 109.47435 * 244.13898 * 3 2 1 30 30 H 1.08998 * 109.47147 * 48.38186 * 5 4 3 31 31 H 1.09005 * 109.46846 * 168.38105 * 5 4 3 32 32 H 0.97007 * 120.00020 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47131 * 317.23671 * 14 4 3 34 34 H 1.09005 * 109.47321 * 197.23709 * 14 4 3 35 35 H 0.96699 * 114.00248 * 300.00009 * 17 15 14 36 36 H 1.08001 * 120.00022 * 359.97438 * 19 18 15 37 37 H 1.07997 * 120.00665 * 180.22997 * 20 19 18 38 38 H 1.09006 * 109.46813 * 270.02124 * 22 21 20 39 39 H 1.08999 * 109.47064 * 30.01309 * 22 21 20 40 40 H 1.08996 * 109.47187 * 150.02084 * 22 21 20 41 41 H 1.08007 * 119.99683 * 179.97438 * 23 21 20 42 42 H 1.08001 * 120.00545 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9814 1.3405 1.1464 5 6 2.2440 1.2565 2.4141 6 6 1.5111 2.5509 2.6556 7 1 1.5213 3.3257 1.9034 8 6 0.8276 2.7461 3.8371 9 7 0.8157 1.8029 4.7534 10 14 -0.0814 4.3504 4.1361 11 1 -1.4753 4.2296 3.6386 12 1 -0.0991 4.6454 5.5915 13 1 0.6077 5.4514 3.4162 14 6 3.9857 0.2727 1.0498 15 6 5.0571 0.6708 0.0327 16 1 5.4580 1.6506 0.2920 17 8 4.4784 0.7230 -1.2728 18 6 6.1684 -0.3471 0.0492 19 6 6.0609 -1.5000 -0.7057 20 6 7.0822 -2.4314 -0.6943 21 6 8.2066 -2.2148 0.0803 22 6 9.3174 -3.2330 0.0975 23 6 8.3117 -1.0642 0.8393 24 6 7.2924 -0.1306 0.8241 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3575 2.1322 0.0742 29 1 2.6334 1.3956 -0.9246 30 1 1.5271 0.4370 2.3638 31 1 2.9439 1.0774 3.2304 32 1 0.3352 1.9403 5.5847 33 1 3.5044 -0.6507 0.7280 34 1 4.4490 0.1203 2.0247 35 1 4.1010 -0.1163 -1.5697 36 1 5.1803 -1.6716 -1.3071 37 1 6.9999 -3.3305 -1.2870 38 1 9.1336 -3.9578 0.8907 39 1 9.3540 -3.7471 -0.8629 40 1 10.2679 -2.7307 0.2774 41 1 9.1900 -0.8951 1.4448 42 1 7.3744 0.7681 1.4174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292388863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:05 Heat of formation + Delta-G solvation = -5.063784 kcal Electronic energy + Delta-G solvation = -21129.148363 eV Core-core repulsion = 18074.455013 eV Total energy + Delta-G solvation = -3054.693351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81444 -37.93467 -35.94073 -33.02265 -32.76447 -31.99650 -30.94438 -29.20407 -27.18175 -26.12121 -24.27153 -22.85052 -22.35940 -20.89552 -20.58419 -18.84192 -17.24359 -16.24906 -15.94600 -15.31159 -15.28319 -14.90108 -14.61919 -14.26425 -13.95700 -13.84441 -13.50806 -13.44489 -13.27890 -12.48972 -12.35152 -12.23844 -12.14500 -11.72181 -11.31450 -11.21926 -11.00741 -10.92218 -10.82439 -10.73255 -10.58791 -10.42379 -10.02703 -9.68678 -9.09139 -8.94915 -8.64393 -8.48475 -8.37901 -7.18035 -5.97918 -3.98046 1.28141 1.37935 2.89785 3.34245 3.40379 3.45146 3.68902 4.44447 4.62495 4.64561 4.74053 4.82343 4.97203 5.15347 5.28610 5.38292 5.40657 5.41759 5.51352 5.54006 5.60873 5.64169 5.66767 5.82854 5.97587 6.03513 6.13960 6.24745 6.34061 6.39369 6.46761 6.52913 6.66303 6.83674 6.97370 7.18253 7.29391 7.35412 7.46007 7.78496 7.85690 8.13888 8.27549 8.59269 9.09030 9.65230 11.12929 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.004036 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.191942 B = 6936.162813 C = 7523.818983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.179 4.179 3 C 0.076 3.924 4 N -0.522 5.522 5 C 0.190 3.810 6 C -0.499 4.499 7 H 0.062 0.938 8 C 0.054 3.946 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.027 3.973 15 C 0.152 3.848 16 H 0.114 0.886 17 O -0.547 6.547 18 C -0.110 4.110 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.095 4.095 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.104 4.104 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.090 0.910 30 H -0.004 1.004 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.365 0.635 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.121 0.879 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.434 -9.248 -10.786 18.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.199 4.199 3 C -0.052 4.052 4 N -0.244 5.244 5 C 0.065 3.935 6 C -0.538 4.538 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.102 4.102 15 C 0.093 3.907 16 H 0.132 0.868 17 O -0.353 6.353 18 C -0.111 4.111 19 C -0.128 4.128 20 C -0.138 4.138 21 C -0.095 4.095 22 C -0.169 4.169 23 C -0.137 4.137 24 C -0.123 4.123 25 H 0.115 0.885 26 H 0.101 0.899 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.014 0.986 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.212 0.788 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.139 0.861 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.823 -8.187 -10.548 18.512 hybrid contribution -1.221 -0.731 0.547 1.525 sum 11.602 -8.918 -10.000 17.724 Atomic orbital electron populations 1.23699 0.96117 1.01050 1.01315 1.23600 0.96681 0.99981 0.99645 1.21581 0.94881 0.93665 0.95047 1.62334 1.15212 1.42635 1.04264 1.19811 0.92322 0.96822 0.84578 1.21131 1.29890 1.01003 1.01795 0.92027 1.24965 0.96842 0.96765 0.96057 1.69956 1.43208 1.33172 1.07674 0.86543 0.79996 0.83943 0.77210 1.20827 1.21350 1.19775 1.22732 0.94422 0.93894 0.99153 1.20997 0.89398 0.97598 0.82703 0.86802 1.86630 1.77983 1.37556 1.33095 1.20713 0.96649 0.96420 0.97295 1.20845 0.98779 0.93758 0.99383 1.20947 0.93770 0.99266 0.99799 1.19902 0.96132 0.96005 0.97463 1.20772 0.96339 0.97518 1.02306 1.21015 0.99119 0.94069 0.99521 1.21043 0.93099 0.99584 0.98532 0.88485 0.89857 0.88949 0.90348 0.89242 0.98596 0.95486 0.93065 0.94922 0.90728 0.78784 0.86383 0.86299 0.91299 0.91744 0.91680 0.86144 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 14.32 29.01 0.42 -2.81 16 2 C -0.18 -3.19 7.48 -36.03 -0.27 -3.46 16 3 C 0.08 1.46 5.45 -4.97 -0.03 1.43 16 4 N -0.52 -11.07 4.58 -237.52 -1.09 -12.16 16 5 C 0.19 4.92 4.59 -4.98 -0.02 4.90 16 6 C -0.50 -14.09 8.65 -34.44 -0.30 -14.38 16 7 H 0.06 1.73 7.32 -52.49 -0.38 1.35 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.95 13.28 55.43 0.74 -26.22 16 10 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 14 C 0.03 0.47 4.66 -3.82 -0.02 0.46 16 15 C 0.15 2.26 3.43 -27.88 -0.10 2.17 16 16 H 0.11 1.82 8.05 -51.93 -0.42 1.40 16 17 O -0.55 -7.85 10.34 -35.23 -0.36 -8.21 16 18 C -0.11 -1.45 5.00 -104.62 -0.52 -1.97 16 19 C -0.11 -1.29 9.33 -39.59 -0.37 -1.66 16 20 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 21 C -0.09 -1.01 5.88 -104.62 -0.62 -1.63 16 22 C -0.11 -0.88 10.01 36.00 0.36 -0.52 16 23 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 24 C -0.10 -1.31 9.68 -39.58 -0.38 -1.70 16 25 H 0.10 1.76 7.84 -52.49 -0.41 1.35 16 26 H 0.08 1.30 8.06 -52.48 -0.42 0.88 16 27 H 0.09 1.52 6.61 -52.49 -0.35 1.17 16 28 H 0.08 1.67 6.77 -51.93 -0.35 1.32 16 29 H 0.09 1.56 5.42 -51.93 -0.28 1.28 16 30 H 0.00 -0.10 6.78 -51.93 -0.35 -0.46 16 31 H 0.03 0.76 7.68 -51.93 -0.40 0.36 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.03 0.55 5.95 -51.93 -0.31 0.24 16 34 H 0.07 1.37 7.62 -51.93 -0.40 0.98 16 35 H 0.36 4.15 7.40 45.56 0.34 4.49 16 36 H 0.12 1.18 6.62 -52.49 -0.35 0.83 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 40 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 41 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 341.31 15.07 5.14 5.14 Total: -1.00 -31.13 341.31 -9.05 -40.18 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.75 Total: 5.52 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -2.71 Total: -21.13 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.35 Total: -38.37 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.36 Total: -8.21 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.13 -9.05 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292388863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.120 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds