Wall clock time and date at job start Mon Mar 30 2020 02:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00140 * 2 1 4 4 N 1.46906 * 109.46960 * 124.13509 * 3 2 1 5 5 C 1.46901 * 111.00206 * 298.50068 * 4 3 2 6 6 C 1.50698 * 109.46741 * 288.38131 * 5 4 3 7 7 H 1.07989 * 120.00470 * 4.87200 * 6 5 4 8 8 C 1.37884 * 119.99428 * 184.87192 * 6 5 4 9 9 N 1.31503 * 120.00217 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99426 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47178 * 90.00542 * 10 8 6 12 12 H 1.48509 * 109.46795 * 210.00017 * 10 8 6 13 13 H 1.48500 * 109.47312 * 329.99637 * 10 8 6 14 14 C 1.46901 * 110.99662 * 62.45359 * 4 3 2 15 15 C 1.52997 * 109.47112 * 77.23906 * 14 4 3 16 16 H 1.09003 * 109.47148 * 53.50322 * 15 14 4 17 17 O 1.42899 * 109.47180 * 293.49998 * 15 14 4 18 18 C 1.50706 * 109.47279 * 173.50002 * 15 14 4 19 19 C 1.38232 * 119.99951 * 84.72714 * 18 15 14 20 20 C 1.38229 * 120.00245 * 179.76993 * 19 18 15 21 21 C 1.38240 * 119.99923 * 0.50578 * 20 19 18 22 22 C 1.50698 * 120.00513 * 179.72943 * 21 20 19 23 23 C 1.38238 * 119.99461 * 359.74479 * 21 20 19 24 24 C 1.38230 * 120.00498 * 0.02562 * 23 21 20 25 25 H 1.07999 * 120.00026 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.00081 * 180.02562 * 1 2 3 27 27 H 1.07998 * 119.99654 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46872 * 4.14095 * 3 2 1 29 29 H 1.08990 * 109.47435 * 244.13898 * 3 2 1 30 30 H 1.08998 * 109.47147 * 48.38186 * 5 4 3 31 31 H 1.09005 * 109.46846 * 168.38105 * 5 4 3 32 32 H 0.97007 * 120.00020 * 179.97438 * 9 8 6 33 33 H 1.08995 * 109.47131 * 317.23671 * 14 4 3 34 34 H 1.09005 * 109.47321 * 197.23709 * 14 4 3 35 35 H 0.96699 * 114.00248 * 300.00009 * 17 15 14 36 36 H 1.08001 * 120.00022 * 359.97438 * 19 18 15 37 37 H 1.07997 * 120.00665 * 180.22997 * 20 19 18 38 38 H 1.09006 * 109.46813 * 270.02124 * 22 21 20 39 39 H 1.08999 * 109.47064 * 30.01309 * 22 21 20 40 40 H 1.08996 * 109.47187 * 150.02084 * 22 21 20 41 41 H 1.08007 * 119.99683 * 179.97438 * 23 21 20 42 42 H 1.08001 * 120.00545 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9814 1.3405 1.1464 5 6 2.2440 1.2565 2.4141 6 6 1.5111 2.5509 2.6556 7 1 1.5213 3.3257 1.9034 8 6 0.8276 2.7461 3.8371 9 7 0.8157 1.8029 4.7534 10 14 -0.0814 4.3504 4.1361 11 1 -1.4753 4.2296 3.6386 12 1 -0.0991 4.6454 5.5915 13 1 0.6077 5.4514 3.4162 14 6 3.9857 0.2727 1.0498 15 6 5.0571 0.6708 0.0327 16 1 5.4580 1.6506 0.2920 17 8 4.4784 0.7230 -1.2728 18 6 6.1684 -0.3471 0.0492 19 6 6.0609 -1.5000 -0.7057 20 6 7.0822 -2.4314 -0.6943 21 6 8.2066 -2.2148 0.0803 22 6 9.3174 -3.2330 0.0975 23 6 8.3117 -1.0642 0.8393 24 6 7.2924 -0.1306 0.8241 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8499 -0.9353 -0.0004 28 1 1.3575 2.1322 0.0742 29 1 2.6334 1.3956 -0.9246 30 1 1.5271 0.4370 2.3638 31 1 2.9439 1.0774 3.2304 32 1 0.3352 1.9403 5.5847 33 1 3.5044 -0.6507 0.7280 34 1 4.4490 0.1203 2.0247 35 1 4.1010 -0.1163 -1.5697 36 1 5.1803 -1.6716 -1.3071 37 1 6.9999 -3.3305 -1.2870 38 1 9.1336 -3.9578 0.8907 39 1 9.3540 -3.7471 -0.8629 40 1 10.2679 -2.7307 0.2774 41 1 9.1900 -0.8951 1.4448 42 1 7.3744 0.7681 1.4174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292388863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:04 Heat of formation + Delta-G solvation = -24.612345 kcal Electronic energy + Delta-G solvation = -21129.996053 eV Core-core repulsion = 18074.455013 eV Total energy + Delta-G solvation = -3055.541040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82865 -39.26373 -37.29446 -34.82106 -34.00609 -33.47789 -31.81030 -30.54013 -28.91578 -27.32733 -25.92864 -23.99221 -23.50870 -22.57134 -21.56132 -20.34323 -18.41653 -18.25540 -17.18263 -16.93724 -16.28529 -16.13341 -16.05851 -15.72047 -15.35969 -14.81689 -14.72403 -14.54442 -14.26818 -14.19948 -13.92401 -13.27735 -13.07125 -12.95819 -12.89656 -12.67336 -12.60281 -12.45117 -12.19922 -12.12945 -12.03653 -11.90969 -11.77627 -11.49662 -10.76245 -10.58879 -10.08352 -9.82458 -9.41873 -8.89452 -8.17465 -6.26052 0.38119 0.50484 1.39996 1.41121 1.46518 1.52908 2.41108 2.78521 3.14373 3.31360 3.52968 3.90828 3.92671 4.05648 4.10999 4.14323 4.17333 4.26192 4.39828 4.51180 4.59884 4.63901 4.75963 4.85472 4.86638 4.92564 4.98652 5.03740 5.19630 5.22492 5.26222 5.28488 5.36601 5.50082 5.66959 5.69779 5.70980 5.74144 5.92814 6.11251 6.12305 6.44706 6.66083 6.78511 6.89551 7.42529 8.93058 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.004036 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.191942 B = 6936.162813 C = 7523.818983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.186 4.186 3 C 0.081 3.919 4 N -0.532 5.532 5 C 0.208 3.792 6 C -0.515 4.515 7 H 0.057 0.943 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.032 3.968 15 C 0.170 3.830 16 H 0.097 0.903 17 O -0.554 6.554 18 C -0.128 4.128 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.097 4.097 22 C -0.112 4.112 23 C -0.129 4.129 24 C -0.121 4.121 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.052 0.948 29 H 0.111 0.889 30 H -0.026 1.026 31 H -0.004 1.004 32 H 0.263 0.737 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.380 0.620 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.044 -10.135 -12.025 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.205 4.205 3 C -0.047 4.047 4 N -0.255 5.255 5 C 0.082 3.918 6 C -0.553 4.553 7 H 0.075 0.925 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.191 1.191 14 C -0.096 4.096 15 C 0.110 3.890 16 H 0.115 0.885 17 O -0.361 6.361 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.144 4.144 21 C -0.097 4.097 22 C -0.168 4.168 23 C -0.146 4.146 24 C -0.140 4.140 25 H 0.104 0.896 26 H 0.124 0.876 27 H 0.129 0.871 28 H 0.070 0.930 29 H 0.128 0.872 30 H -0.008 1.008 31 H 0.014 0.986 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.229 0.771 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.156 0.844 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.441 -9.084 -11.815 20.069 hybrid contribution -1.355 -0.525 0.894 1.706 sum 12.087 -9.609 -10.921 18.913 Atomic orbital electron populations 1.23863 0.96232 1.01678 1.00618 1.23603 0.96873 0.99854 1.00195 1.21531 0.94522 0.93736 0.94876 1.62232 1.15567 1.44723 1.02948 1.19411 0.91171 0.95199 0.86058 1.21422 1.30283 1.01703 1.01924 0.92480 1.25834 0.97620 1.00298 0.95752 1.70078 1.44068 1.35216 1.08161 0.85470 0.78838 0.79620 0.77231 1.19889 1.20778 1.19105 1.22756 0.94074 0.93343 0.99452 1.20598 0.88941 0.97403 0.82034 0.88504 1.86586 1.78112 1.38931 1.32486 1.20548 0.96428 0.96900 0.99026 1.21093 0.99819 0.93299 0.99114 1.21293 0.93386 0.99819 0.99869 1.20324 0.96846 0.96145 0.96400 1.20830 0.95620 0.97002 1.03361 1.21279 0.99328 0.94091 0.99942 1.21195 0.93716 1.00213 0.98833 0.89602 0.87579 0.87088 0.92951 0.87167 1.00790 0.98597 0.92858 0.93758 0.92389 0.77087 0.84708 0.83886 0.90549 0.90406 0.90728 0.84417 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.40 14.32 67.78 0.97 -5.42 16 2 C -0.19 -6.48 7.48 25.65 0.19 -6.29 16 3 C 0.08 3.11 5.45 85.56 0.47 3.57 16 4 N -0.53 -23.08 4.58 -905.37 -4.15 -27.23 16 5 C 0.21 11.17 4.59 85.56 0.39 11.56 16 6 C -0.51 -29.73 8.65 25.60 0.22 -29.51 16 7 H 0.06 3.28 7.32 -2.92 -0.02 3.26 16 8 C 0.00 0.15 5.46 84.66 0.46 0.61 16 9 N -0.93 -56.97 13.28 21.45 0.28 -56.69 16 10 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 11 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 C 0.03 1.15 4.66 86.30 0.40 1.55 16 15 C 0.17 5.03 3.43 29.85 0.10 5.13 16 16 H 0.10 3.18 8.05 -2.39 -0.02 3.16 16 17 O -0.55 -15.21 10.34 -148.98 -1.54 -16.75 16 18 C -0.13 -3.32 5.00 -19.86 -0.10 -3.42 16 19 C -0.12 -2.52 9.33 22.27 0.21 -2.31 16 20 C -0.13 -2.42 9.70 22.27 0.22 -2.20 16 21 C -0.10 -1.85 5.88 -19.86 -0.12 -1.97 16 22 C -0.11 -1.41 10.01 71.24 0.71 -0.70 16 23 C -0.13 -2.73 9.70 22.27 0.22 -2.51 16 24 C -0.12 -3.04 9.68 22.27 0.22 -2.82 16 25 H 0.09 3.12 7.84 -2.91 -0.02 3.10 16 26 H 0.11 3.14 8.06 -2.91 -0.02 3.11 16 27 H 0.11 3.45 6.61 -2.91 -0.02 3.43 16 28 H 0.05 2.27 6.77 -2.39 -0.02 2.26 16 29 H 0.11 3.76 5.42 -2.39 -0.01 3.75 16 30 H -0.03 -1.46 6.78 -2.39 -0.02 -1.48 16 31 H 0.00 -0.24 7.68 -2.38 -0.02 -0.26 16 32 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 33 H 0.04 1.46 5.95 -2.39 -0.01 1.44 16 34 H 0.06 2.23 7.62 -2.38 -0.02 2.21 16 35 H 0.38 7.84 7.40 -74.06 -0.55 7.29 16 36 H 0.14 2.36 6.62 -2.91 -0.02 2.34 16 37 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 38 H 0.08 0.88 8.14 -2.38 -0.02 0.87 16 39 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 40 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 41 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.12 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -67.52 341.31 1.64 -65.88 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.45 Total: 22.26 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 4.56 Total: -34.72 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -3.86 Total: -83.92 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -1.54 Total: -16.75 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -67.52 1.64 -65.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292388863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.265 kcal (2) G-P(sol) polarization free energy of solvation -67.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds