Wall clock time and date at job start Mon Mar 30 2020 02:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00319 * 2 1 4 4 N 1.46905 * 109.47219 * 125.35678 * 3 2 1 5 5 C 1.46898 * 110.99787 * 164.34580 * 4 3 2 6 6 C 1.50703 * 109.47374 * 295.44838 * 5 4 3 7 7 H 1.07999 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00159 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99486 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00285 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46627 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46800 * 120.00025 * 10 8 6 13 13 H 1.48488 * 109.47296 * 240.00344 * 10 8 6 14 14 C 1.46897 * 111.00271 * 288.30707 * 4 3 2 15 15 C 1.53002 * 109.47061 * 162.16071 * 14 4 3 16 16 H 1.09002 * 109.46662 * 307.02939 * 15 14 4 17 17 O 1.42900 * 109.47233 * 67.03150 * 15 14 4 18 18 C 1.50695 * 109.47070 * 187.03508 * 15 14 4 19 19 C 1.38236 * 119.99944 * 279.72516 * 18 15 14 20 20 C 1.38239 * 120.00030 * 179.78799 * 19 18 15 21 21 C 1.38241 * 119.99966 * 0.44024 * 20 19 18 22 22 C 1.50691 * 120.00027 * 179.83461 * 21 20 19 23 23 C 1.38236 * 119.99589 * 359.81145 * 21 20 19 24 24 C 1.38230 * 120.00408 * 359.97438 * 23 21 20 25 25 H 1.08005 * 120.00321 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.99988 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99901 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.46800 * 5.36819 * 3 2 1 29 29 H 1.08991 * 109.47509 * 245.36131 * 3 2 1 30 30 H 1.08995 * 109.46997 * 55.45038 * 5 4 3 31 31 H 1.09007 * 109.47196 * 175.44776 * 5 4 3 32 32 H 0.97002 * 119.99469 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.46829 * 282.15530 * 14 4 3 34 34 H 1.08994 * 109.47207 * 42.15671 * 14 4 3 35 35 H 0.96700 * 113.99895 * 60.00165 * 17 15 14 36 36 H 1.07993 * 119.99978 * 359.97438 * 19 18 15 37 37 H 1.07993 * 120.00373 * 180.27335 * 20 19 18 38 38 H 1.09002 * 109.47386 * 269.97490 * 22 21 20 39 39 H 1.08997 * 109.47166 * 29.97980 * 22 21 20 40 40 H 1.09000 * 109.47145 * 149.97889 * 22 21 20 41 41 H 1.08005 * 119.99842 * 180.02562 * 23 21 20 42 42 H 1.08000 * 120.00156 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0024 1.3283 1.1296 5 6 4.0022 2.3913 0.9612 6 6 4.8528 2.0943 -0.2469 7 1 4.6688 1.2049 -0.8314 8 6 5.8659 2.9578 -0.6060 9 7 6.0903 4.0405 0.1062 10 14 6.9207 2.5892 -2.1029 11 1 6.4683 1.3198 -2.7267 12 1 6.7912 3.6962 -3.0843 13 1 8.3405 2.4589 -1.6881 14 6 2.2883 1.4744 2.4049 15 6 3.2071 1.0564 3.5547 16 1 3.6043 0.0605 3.3586 17 8 4.2862 1.9867 3.6644 18 6 2.4247 1.0404 4.8425 19 6 2.1821 2.2216 5.5186 20 6 1.4606 2.2075 6.6977 21 6 0.9895 1.0111 7.2055 22 6 0.2062 0.9953 8.4927 23 6 1.2366 -0.1706 6.5321 24 6 1.9542 -0.1560 5.3507 25 1 -0.5401 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3591 2.1313 0.0961 29 1 2.6162 1.4055 -0.9340 30 1 3.4966 3.3471 0.8234 31 1 4.6345 2.4393 1.8478 32 1 6.8033 4.6479 -0.1462 33 1 1.9906 2.5145 2.5375 34 1 1.4016 0.8406 2.3995 35 1 4.0058 2.8955 3.8392 36 1 2.5537 3.1557 5.1241 37 1 1.2673 3.1307 7.2236 38 1 0.8899 0.8721 9.3326 39 1 -0.3355 1.9350 8.5999 40 1 -0.5024 0.1672 8.4767 41 1 0.8681 -1.1052 6.9285 42 1 2.1476 -1.0793 4.8249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292388866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:07 Heat of formation + Delta-G solvation = -24.287899 kcal Electronic energy + Delta-G solvation = -21134.089519 eV Core-core repulsion = 18078.562548 eV Total energy + Delta-G solvation = -3055.526971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.79557 -39.11505 -37.27265 -34.97046 -33.93083 -33.67581 -31.81941 -30.62250 -28.73757 -27.45205 -25.74822 -24.09561 -23.53006 -22.15447 -21.48845 -20.58382 -18.61124 -18.21469 -17.09070 -16.85798 -16.37391 -16.33508 -15.98238 -15.56162 -15.15145 -14.82619 -14.73198 -14.57667 -14.26780 -14.11759 -13.91499 -13.44472 -13.17618 -13.07657 -12.88381 -12.73721 -12.68266 -12.43342 -12.32023 -12.13599 -11.94500 -11.80686 -11.63824 -11.29285 -10.77550 -10.47786 -10.12657 -9.83023 -9.42116 -8.98073 -8.14823 -6.21308 0.37662 0.49889 1.39843 1.40978 1.43137 1.53916 2.42843 2.78362 3.17547 3.28282 3.58514 3.86289 3.89840 4.06801 4.13491 4.15669 4.22588 4.27954 4.32118 4.49706 4.59918 4.63461 4.71114 4.84189 4.86905 4.91362 4.95204 4.98998 5.09897 5.20890 5.28730 5.32096 5.49450 5.53323 5.67244 5.69853 5.71693 5.75579 5.92137 6.11814 6.17918 6.43004 6.69193 6.76771 6.94497 7.45553 8.96364 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.004413 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.790428 B = 6343.212969 C = 7321.263025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.144 4.144 3 C 0.082 3.918 4 N -0.533 5.533 5 C 0.187 3.813 6 C -0.521 4.521 7 H 0.056 0.944 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.041 3.959 15 C 0.160 3.840 16 H 0.099 0.901 17 O -0.559 6.559 18 C -0.126 4.126 19 C -0.121 4.121 20 C -0.126 4.126 21 C -0.095 4.095 22 C -0.111 4.111 23 C -0.124 4.124 24 C -0.114 4.114 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.020 0.980 29 H 0.067 0.933 30 H -0.052 1.052 31 H 0.061 0.939 32 H 0.261 0.739 33 H 0.019 0.981 34 H 0.086 0.914 35 H 0.374 0.626 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.145 0.855 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.929 -7.280 13.398 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.162 4.162 3 C -0.045 4.045 4 N -0.257 5.257 5 C 0.062 3.938 6 C -0.559 4.559 7 H 0.074 0.926 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.190 1.190 12 H -0.205 1.205 13 H -0.205 1.205 14 C -0.088 4.088 15 C 0.101 3.899 16 H 0.117 0.883 17 O -0.366 6.366 18 C -0.127 4.127 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.095 4.095 22 C -0.167 4.167 23 C -0.141 4.141 24 C -0.132 4.132 25 H 0.112 0.888 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.038 0.962 29 H 0.085 0.915 30 H -0.034 1.034 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.105 0.895 35 H 0.222 0.778 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.163 0.837 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.216 -8.105 13.297 20.424 hybrid contribution 0.179 1.609 -0.975 1.890 sum -13.037 -6.496 12.321 19.078 Atomic orbital electron populations 1.23945 0.94995 1.02588 1.00910 1.22896 0.95971 0.97738 0.99629 1.21161 0.93438 0.94526 0.95414 1.62028 1.14268 1.48652 1.00739 1.19921 0.89953 0.85538 0.98429 1.21535 1.15476 1.07312 1.11599 0.92579 1.25810 0.98733 0.94948 1.00054 1.70089 1.32590 1.13479 1.40979 0.85441 0.78441 0.78251 0.79124 1.19010 1.20493 1.20533 1.22664 0.96745 0.98797 0.90579 1.20730 0.85946 0.93716 0.89522 0.88327 1.86700 1.34587 1.21420 1.93858 1.20519 1.00118 0.94866 0.97225 1.21052 0.99064 0.97554 0.96269 1.21247 0.98484 0.98831 0.95848 1.20323 0.98360 0.92916 0.97916 1.20827 0.99219 1.03721 0.92965 1.21309 0.99075 0.98826 0.94931 1.21194 0.98001 0.97311 0.96675 0.88823 0.86131 0.87064 0.96200 0.91484 1.03392 0.92175 0.92976 0.96239 0.89540 0.77760 0.86297 0.84319 0.90363 0.90745 0.90370 0.83680 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.72 14.32 67.79 0.97 -3.75 16 2 C -0.14 -4.55 8.74 25.65 0.22 -4.33 16 3 C 0.08 3.31 5.25 85.55 0.45 3.76 16 4 N -0.53 -23.52 4.40 -905.39 -3.98 -27.50 16 5 C 0.19 10.13 4.49 85.56 0.38 10.51 16 6 C -0.52 -30.40 8.28 25.60 0.21 -30.19 16 7 H 0.06 3.25 7.15 -2.91 -0.02 3.23 16 8 C 0.00 0.13 5.46 84.65 0.46 0.60 16 9 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 10 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 C 0.04 1.48 4.60 86.30 0.40 1.88 16 15 C 0.16 5.54 3.41 29.85 0.10 5.64 16 16 H 0.10 3.58 8.00 -2.39 -0.02 3.56 16 17 O -0.56 -22.44 10.17 -148.98 -1.52 -23.95 16 18 C -0.13 -3.60 4.97 -19.87 -0.10 -3.70 16 19 C -0.12 -3.19 9.32 22.27 0.21 -2.98 16 20 C -0.13 -2.76 9.70 22.27 0.22 -2.54 16 21 C -0.10 -1.86 5.88 -19.87 -0.12 -1.98 16 22 C -0.11 -1.40 10.01 71.23 0.71 -0.69 16 23 C -0.12 -2.50 9.70 22.27 0.22 -2.29 16 24 C -0.11 -2.78 9.67 22.27 0.22 -2.56 16 25 H 0.09 2.31 7.84 -2.91 -0.02 2.29 16 26 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 27 H 0.11 3.46 8.06 -2.91 -0.02 3.44 16 28 H 0.02 0.79 7.71 -2.39 -0.02 0.77 16 29 H 0.07 3.05 6.47 -2.39 -0.02 3.04 16 30 H -0.05 -3.06 8.13 -2.39 -0.02 -3.08 16 31 H 0.06 3.44 5.00 -2.38 -0.01 3.43 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 33 H 0.02 0.73 8.03 -2.39 -0.02 0.72 16 34 H 0.09 2.82 7.13 -2.39 -0.02 2.81 16 35 H 0.37 13.27 7.49 -74.06 -0.55 12.72 16 36 H 0.12 3.03 6.78 -2.91 -0.02 3.01 16 37 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.81 8.09 -2.39 -0.02 0.80 16 40 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 41 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 42 H 0.13 2.88 8.04 -2.91 -0.02 2.86 16 Total: -1.00 -68.44 345.13 1.80 -66.63 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.44 Total: 26.43 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 4.55 Total: -32.62 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -3.70 Total: -84.22 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.52 Total: -23.95 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -68.44 1.80 -66.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292388866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.344 kcal (2) G-P(sol) polarization free energy of solvation -68.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds