Wall clock time and date at job start Mon Mar 30 2020 02:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 120.00214 * 2 1 4 4 C 1.38236 * 120.00180 * 179.97438 * 3 2 1 5 5 C 1.38242 * 119.99665 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99723 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46731 * 174.96766 * 6 5 4 8 8 C 1.52998 * 109.47196 * 294.96824 * 6 5 4 9 9 N 1.46500 * 109.46993 * 54.96858 * 6 5 4 10 10 C 1.46493 * 120.00286 * 293.96008 * 9 6 5 11 11 C 1.34774 * 119.99861 * 113.96385 * 9 6 5 12 12 O 1.21281 * 120.00519 * 359.97438 * 11 9 6 13 13 C 1.50707 * 120.00075 * 180.02562 * 11 9 6 14 14 C 1.53005 * 109.47171 * 179.97438 * 13 11 9 15 15 C 1.50694 * 109.46765 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00609 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00125 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00023 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47442 * 89.99992 * 19 17 15 21 21 H 1.48502 * 109.47379 * 210.00465 * 19 17 15 22 22 H 1.48499 * 109.46846 * 330.00199 * 19 17 15 23 23 C 1.38232 * 120.00036 * 0.27541 * 5 4 3 24 24 C 1.38236 * 119.99715 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47485 * 89.99533 * 1 2 3 26 26 H 1.09002 * 109.47414 * 210.00285 * 1 2 3 27 27 H 1.09010 * 109.46869 * 330.00472 * 1 2 3 28 28 H 1.07997 * 119.99789 * 359.97310 * 3 2 1 29 29 H 1.08001 * 120.00116 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47027 * 300.00023 * 8 6 5 31 31 H 1.09000 * 109.46826 * 60.00188 * 8 6 5 32 32 H 1.08998 * 109.47252 * 180.02562 * 8 6 5 33 33 H 1.08994 * 109.47575 * 87.79049 * 10 9 6 34 34 H 1.08998 * 109.47557 * 207.79855 * 10 9 6 35 35 H 1.09007 * 109.47152 * 327.79077 * 10 9 6 36 36 H 1.09001 * 109.46928 * 299.99424 * 13 11 9 37 37 H 1.08996 * 109.47256 * 59.99653 * 13 11 9 38 38 H 1.09001 * 109.46822 * 299.99609 * 14 13 11 39 39 H 1.08996 * 109.47216 * 59.99749 * 14 13 11 40 40 H 0.97000 * 119.99719 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.00010 * 179.73142 * 23 5 4 42 42 H 1.08003 * 120.00088 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 -0.0002 0.0028 7 1 6.1419 -1.0239 0.0937 8 6 6.2897 0.6081 -1.3048 9 7 6.2661 0.7932 1.1338 10 6 6.0245 2.2375 1.1736 11 6 6.9369 0.1943 2.1377 12 8 7.1366 -1.0015 2.1050 13 6 7.4378 1.0103 3.3015 14 6 8.1590 0.0951 4.2932 15 6 8.6604 0.9112 5.4565 16 1 8.4830 1.9762 5.4856 17 6 9.3467 0.2986 6.4835 18 7 9.7848 1.0109 7.4986 19 14 9.6544 -1.5433 6.4331 20 1 10.9425 -1.8114 5.7446 21 1 9.7141 -2.0733 7.8190 22 1 8.5510 -2.2094 5.6955 23 6 3.5805 -1.1972 -0.0036 24 6 2.1981 -1.1972 0.0005 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6582 2.1324 -0.0004 29 1 4.1206 2.1324 0.0001 30 1 5.9270 0.0178 -2.1463 31 1 5.9265 1.6318 -1.3956 32 1 7.3797 0.6077 -1.3041 33 1 5.0606 2.4319 1.6437 34 1 6.8135 2.7222 1.7487 35 1 6.0199 2.6333 0.1579 36 1 8.1292 1.7718 2.9404 37 1 6.5948 1.4908 3.7979 38 1 7.4674 -0.6661 4.6542 39 1 9.0020 -0.3858 3.7970 40 1 10.2680 0.5798 8.2208 41 1 4.1205 -2.1326 -0.0072 42 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292514929.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:18 Heat of formation + Delta-G solvation = -22.479116 kcal Electronic energy + Delta-G solvation = -21028.193462 eV Core-core repulsion = 17972.744926 eV Total energy + Delta-G solvation = -3055.448536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.29096 -38.96511 -36.16181 -33.61819 -33.08248 -31.41845 -31.07556 -30.44798 -27.09530 -26.75865 -26.11701 -22.89821 -22.77380 -21.32917 -20.20748 -18.68184 -17.24345 -16.59193 -16.38941 -15.65819 -15.33184 -15.21231 -14.77044 -14.08672 -13.98887 -13.73758 -13.56248 -13.49798 -13.22681 -12.66846 -12.51932 -12.35454 -12.32255 -12.24200 -12.20650 -11.91305 -11.46255 -11.33942 -11.03073 -10.95503 -10.90500 -10.11778 -9.99885 -9.76314 -9.22637 -9.14139 -9.01414 -8.61567 -8.51942 -8.47571 -6.01502 -3.99994 1.18247 1.30874 3.10299 3.19801 3.39245 3.45691 3.57220 3.70966 4.52626 4.53035 4.66631 4.75623 4.89687 4.95726 5.08113 5.14688 5.20965 5.31245 5.34124 5.35218 5.37185 5.48656 5.52660 5.56293 5.61275 5.75242 5.82740 5.92110 5.96997 6.03829 6.08657 6.13257 6.31230 6.46046 6.49618 6.66470 6.77117 6.90082 7.38736 7.45983 7.63283 7.81254 8.51003 8.64015 9.01536 9.61784 11.11356 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023597 B = 0.003819 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.287241 B = 7330.039772 C = 7551.043817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.123 4.123 4 C -0.109 4.109 5 C -0.094 4.094 6 C 0.172 3.828 7 H 0.106 0.894 8 C -0.156 4.156 9 N -0.618 5.618 10 C 0.072 3.928 11 C 0.513 3.487 12 O -0.540 6.540 13 C -0.119 4.119 14 C 0.001 3.999 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.069 3.931 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 C -0.102 4.102 24 C -0.121 4.121 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.023 0.977 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.162 1.433 -19.902 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.127 4.127 5 C -0.095 4.095 6 C 0.069 3.931 7 H 0.124 0.876 8 C -0.213 4.213 9 N -0.353 5.353 10 C -0.071 4.071 11 C 0.304 3.696 12 O -0.416 6.416 13 C -0.159 4.159 14 C -0.037 4.037 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.132 4.132 18 N -0.543 5.543 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.185 1.185 23 C -0.121 4.121 24 C -0.139 4.139 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.937 0.777 -19.730 25.375 hybrid contribution 0.152 -0.786 0.121 0.810 sum -15.785 -0.009 -19.609 25.173 Atomic orbital electron populations 1.20783 0.91372 1.02753 1.02107 1.19923 0.95974 0.93308 0.99894 1.21003 0.94148 0.97425 1.01488 1.21216 0.94091 0.97954 0.99480 1.20176 0.95630 0.93477 1.00253 1.19869 0.88918 0.98008 0.86305 0.87601 1.22123 1.01731 1.01271 0.96220 1.48037 1.57123 1.08275 1.21840 1.21934 1.02088 0.80745 1.02347 1.21583 0.76162 0.88705 0.83168 1.90627 1.56902 1.15753 1.78288 1.21692 1.01227 0.99558 0.93437 1.19377 0.95592 0.95062 0.93619 1.21111 1.35552 0.96167 1.03337 0.90954 1.24970 0.94987 0.98159 0.95121 1.69915 1.38468 1.35978 1.09946 0.86800 0.79530 0.86188 0.77070 1.20239 1.21443 1.18536 1.21081 0.94152 0.97696 0.99145 1.21005 0.94077 0.97513 1.01303 0.91340 0.91623 0.91607 0.86211 0.85576 0.91455 0.92095 0.91705 0.92557 0.90119 0.91296 0.89622 0.89667 0.95877 0.96305 0.92739 0.85940 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.53 16 3 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 4 C -0.11 -1.18 8.13 -39.58 -0.32 -1.50 16 5 C -0.09 -1.15 4.96 -104.62 -0.52 -1.67 16 6 C 0.17 2.23 2.95 -69.08 -0.20 2.03 16 7 H 0.11 1.59 6.67 -51.93 -0.35 1.24 16 8 C -0.16 -1.55 8.89 37.16 0.33 -1.22 16 9 N -0.62 -8.94 2.75 -175.27 -0.48 -9.42 16 10 C 0.07 0.78 8.17 59.84 0.49 1.27 16 11 C 0.51 9.77 7.67 -10.98 -0.08 9.69 16 12 O -0.54 -12.24 15.32 5.56 0.09 -12.16 16 13 C -0.12 -2.39 4.16 -27.88 -0.12 -2.50 16 14 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 15 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 19 Si 0.88 22.87 27.47 -169.99 -4.67 18.20 16 20 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 23 C -0.10 -1.23 9.67 -39.58 -0.38 -1.61 16 24 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 27 H 0.06 0.44 8.09 -51.92 -0.42 0.02 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.13 1.15 4.96 -52.49 -0.26 0.89 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.52 6.08 -51.93 -0.32 0.21 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.58 6.98 -51.93 -0.36 0.22 16 34 H 0.08 0.87 6.36 -51.93 -0.33 0.54 16 35 H 0.07 0.57 5.54 -51.92 -0.29 0.28 16 36 H 0.09 1.57 7.40 -51.93 -0.38 1.18 16 37 H 0.09 1.60 8.11 -51.93 -0.42 1.18 16 38 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 39 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 41 H 0.12 1.40 7.95 -52.48 -0.42 0.98 16 42 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -34.44 336.36 -8.01 -42.44 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.43 Total: -2.23 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.35 Total: -14.43 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.29 Total: -36.90 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.67 Total: 18.20 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.44 -8.01 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292514929.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.964 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds