Wall clock time and date at job start Mon Mar 30 2020 02:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38236 * 119.99557 * 2 1 4 4 C 1.38239 * 119.99738 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99891 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47198 * 5.34744 * 6 5 4 8 8 C 1.53002 * 109.47379 * 245.34532 * 6 5 4 9 9 N 1.46501 * 109.46847 * 125.35003 * 6 5 4 10 10 C 1.46498 * 120.00561 * 66.04143 * 9 6 5 11 11 C 1.34785 * 119.99773 * 246.03774 * 9 6 5 12 12 O 1.21279 * 119.99623 * 0.02562 * 11 9 6 13 13 C 1.50694 * 119.99910 * 179.97438 * 11 9 6 14 14 C 1.53005 * 109.46997 * 180.02562 * 13 11 9 15 15 C 1.50704 * 109.47011 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00133 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99777 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99695 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00124 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.46871 * 90.00035 * 19 17 15 21 21 H 1.48496 * 109.46915 * 210.00084 * 19 17 15 22 22 H 1.48502 * 109.47153 * 330.00211 * 19 17 15 23 23 C 1.38236 * 120.00154 * 0.26531 * 5 4 3 24 24 C 1.38232 * 120.00224 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46854 * 90.00706 * 1 2 3 26 26 H 1.08996 * 109.46833 * 210.00221 * 1 2 3 27 27 H 1.08995 * 109.47267 * 330.00555 * 1 2 3 28 28 H 1.07999 * 120.00379 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.99851 * 179.97438 * 4 3 2 30 30 H 1.09001 * 109.47461 * 180.02562 * 8 6 5 31 31 H 1.09006 * 109.47244 * 300.00375 * 8 6 5 32 32 H 1.09005 * 109.47064 * 60.00091 * 8 6 5 33 33 H 1.09003 * 109.46885 * 265.10130 * 10 9 6 34 34 H 1.09000 * 109.46787 * 25.09366 * 10 9 6 35 35 H 1.09000 * 109.47608 * 145.09654 * 10 9 6 36 36 H 1.08993 * 109.47518 * 300.00365 * 13 11 9 37 37 H 1.09002 * 109.47198 * 60.00258 * 13 11 9 38 38 H 1.08993 * 109.47204 * 300.00458 * 14 13 11 39 39 H 1.08994 * 109.46847 * 60.00683 * 14 13 11 40 40 H 0.97001 * 119.99849 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.00492 * 179.72693 * 23 5 4 42 42 H 1.08004 * 120.00084 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0002 -0.0017 7 1 6.1421 1.0235 0.0933 8 6 6.2878 -0.6020 -1.3128 9 7 6.2679 -0.7984 1.1249 10 6 6.0265 -2.2429 1.1584 11 6 6.9402 -0.2040 2.1306 12 8 7.1397 0.9919 2.1030 13 6 7.4429 -1.0254 3.2897 14 6 8.1655 -0.1148 4.2846 15 6 8.6677 -0.9361 5.4441 16 1 8.4897 -2.0010 5.4687 17 6 9.3544 -0.3279 6.4734 18 7 9.7931 -1.0447 7.4850 19 14 9.6617 1.5142 6.4311 20 1 8.5368 2.2190 7.0967 21 1 10.9285 1.8211 7.1426 22 1 9.7641 1.9667 5.0204 23 6 3.5806 -1.1970 -0.0055 24 6 2.1982 -1.1971 -0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5137 28 1 1.6581 2.1325 -0.0004 29 1 4.1204 2.1326 -0.0010 30 1 7.3778 -0.6024 -1.3135 31 1 5.9244 -1.6253 -1.4079 32 1 5.9238 -0.0079 -2.1511 33 1 5.1269 -2.4476 1.7390 34 1 5.8945 -2.6129 0.1416 35 1 6.8782 -2.7431 1.6194 36 1 6.6007 -1.5083 3.7852 37 1 8.1337 -1.7852 2.9241 38 1 9.0076 0.3684 3.7893 39 1 7.4744 0.6446 4.6501 40 1 10.2759 -0.6168 8.2093 41 1 4.1206 -2.1324 -0.0100 42 1 1.6583 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292514941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:20 Heat of formation + Delta-G solvation = -42.728053 kcal Electronic energy + Delta-G solvation = -21028.065662 eV Core-core repulsion = 17971.739066 eV Total energy + Delta-G solvation = -3056.326596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40380 -40.06424 -37.33314 -35.59812 -34.24416 -33.17410 -31.87573 -31.52094 -28.16575 -27.93440 -27.47192 -24.18609 -23.59109 -22.75625 -21.38201 -20.05508 -19.14393 -17.90914 -17.57524 -16.88704 -16.51831 -16.29702 -16.04685 -15.71360 -14.97035 -14.91131 -14.68497 -14.54284 -14.36907 -14.25305 -13.87940 -13.48220 -13.36104 -13.15192 -13.09178 -12.94781 -12.91033 -12.67864 -12.30706 -12.08036 -11.97376 -11.83767 -11.78892 -11.73342 -11.40894 -10.79314 -10.72026 -9.83203 -9.68139 -9.43686 -8.32765 -6.35405 0.35254 0.49464 1.31551 1.33309 1.48762 1.64346 2.04819 2.33793 2.85975 3.02819 3.59896 3.81300 3.91628 4.07408 4.11788 4.18347 4.22963 4.30155 4.35714 4.41939 4.52844 4.56928 4.68675 4.75669 4.78391 4.84310 4.87588 4.95460 4.97118 5.02223 5.16878 5.20393 5.29761 5.31499 5.41990 5.50046 5.55221 5.59164 5.69714 5.73739 6.11538 6.22064 6.36765 6.70432 7.20925 7.29971 8.82892 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023599 B = 0.003819 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.206154 B = 7330.820417 C = 7551.375191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.124 4.124 5 C -0.110 4.110 6 C 0.170 3.830 7 H 0.076 0.924 8 C -0.147 4.147 9 N -0.606 5.606 10 C 0.063 3.937 11 C 0.511 3.489 12 O -0.588 6.588 13 C -0.112 4.112 14 C 0.006 3.994 15 C -0.528 4.528 16 H 0.052 0.948 17 C 0.015 3.985 18 N -0.942 5.942 19 Si 0.936 3.064 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.112 4.112 24 C -0.127 4.127 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.115 0.885 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.009 0.991 39 H 0.004 0.996 40 H 0.268 0.732 41 H 0.145 0.855 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.795 -2.268 -21.547 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.142 4.142 5 C -0.111 4.111 6 C 0.067 3.933 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.338 5.338 10 C -0.079 4.079 11 C 0.302 3.698 12 O -0.468 6.468 13 C -0.151 4.151 14 C -0.032 4.032 15 C -0.566 4.566 16 H 0.070 0.930 17 C -0.183 4.183 18 N -0.583 5.583 19 Si 0.761 3.239 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.130 4.130 24 C -0.145 4.145 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.151 0.849 29 H 0.133 0.867 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.077 0.923 41 H 0.163 0.837 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.592 -1.657 -21.411 27.761 hybrid contribution 0.526 0.995 0.612 1.281 sum -17.066 -0.662 -20.799 26.913 Atomic orbital electron populations 1.20831 0.89401 1.03481 1.03161 1.20312 0.97547 0.93043 0.98683 1.21233 0.93668 0.98740 1.01315 1.21206 0.95045 0.97698 1.00275 1.20136 0.94929 0.94261 1.01810 1.19954 0.89777 0.96558 0.86977 0.90582 1.22081 1.01324 1.02434 0.94633 1.48023 1.55056 1.09854 1.20891 1.22243 1.02798 0.78222 1.04592 1.21300 0.76766 0.87938 0.83840 1.90607 1.59245 1.17539 1.79402 1.21497 1.01619 0.98849 0.93143 1.19216 0.95226 0.95047 0.93681 1.21408 1.35078 0.95655 1.04442 0.93001 1.25773 0.95043 1.02502 0.94944 1.70015 1.39650 1.37830 1.10784 0.85858 0.78155 0.80948 0.78934 1.19486 1.20106 1.18763 1.21437 0.94654 0.97941 0.98971 1.21357 0.94078 0.98470 1.00603 0.90021 0.90578 0.91248 0.84891 0.86731 0.92259 0.89972 0.90294 0.91555 0.87796 0.90040 0.88428 0.87800 0.97244 0.97732 0.92333 0.83734 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.24 0.71 -0.63 16 2 C -0.10 -1.72 5.88 -19.87 -0.12 -1.83 16 3 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 4 C -0.12 -2.97 9.67 22.27 0.22 -2.76 16 5 C -0.11 -2.57 4.96 -19.87 -0.10 -2.67 16 6 C 0.17 4.28 2.95 44.25 0.13 4.41 16 7 H 0.08 2.38 6.67 -2.39 -0.02 2.36 16 8 C -0.15 -2.63 8.93 71.98 0.64 -1.99 16 9 N -0.61 -16.74 2.75 -826.79 -2.28 -19.02 16 10 C 0.06 1.17 7.97 127.77 1.02 2.19 16 11 C 0.51 19.42 7.67 87.65 0.67 20.09 16 12 O -0.59 -27.35 15.32 -3.03 -0.05 -27.40 16 13 C -0.11 -4.41 4.26 29.85 0.13 -4.28 16 14 C 0.01 0.32 3.33 29.85 0.10 0.42 16 15 C -0.53 -30.95 9.66 25.60 0.25 -30.70 16 16 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 17 C 0.02 0.91 5.47 84.66 0.46 1.38 16 18 N -0.94 -59.47 13.96 21.45 0.30 -59.18 16 19 Si 0.94 47.62 27.47 68.60 1.88 49.50 16 20 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 22 H -0.26 -13.39 6.54 99.48 0.65 -12.74 16 23 C -0.11 -2.11 8.26 22.27 0.18 -1.93 16 24 C -0.13 -2.19 9.70 22.27 0.22 -1.97 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 27 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 28 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 29 H 0.11 2.78 7.95 -2.91 -0.02 2.76 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.11 6.03 -2.38 -0.01 1.09 16 32 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.16 7.49 -2.39 -0.02 1.14 16 34 H 0.10 1.27 5.08 -2.39 -0.01 1.26 16 35 H 0.08 1.49 6.64 -2.39 -0.02 1.48 16 36 H 0.10 3.58 8.11 -2.39 -0.02 3.56 16 37 H 0.10 3.69 7.41 -2.39 -0.02 3.67 16 38 H 0.01 0.50 7.16 -2.39 -0.02 0.48 16 39 H 0.00 0.23 7.52 -2.39 -0.02 0.21 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.15 2.06 4.87 -2.91 -0.01 2.05 16 42 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -75.63 336.64 5.53 -70.09 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.94 Total: 8.75 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 4.73 Total: -22.76 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.98 Total: -78.19 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.40 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.88 Total: 49.50 kcal Total: -75.63 5.53 -70.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292514941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.366 kcal (2) G-P(sol) polarization free energy of solvation -75.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds