Wall clock time and date at job start Mon Mar 30 2020 02:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 119.99751 * 2 1 4 4 C 1.38241 * 120.00004 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00140 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99465 * 359.97181 * 4 3 2 7 7 C 1.50703 * 119.99520 * 180.02562 * 6 4 3 8 8 N 1.46506 * 109.47289 * 90.00180 * 7 6 4 9 9 C 1.34774 * 120.00072 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00066 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99838 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.47353 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47353 * 180.02562 * 12 11 9 14 14 H 1.08007 * 120.00057 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99993 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00258 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.47057 * 239.99829 * 17 15 13 21 21 C 1.38228 * 120.00467 * 0.28169 * 6 4 3 22 22 C 1.50700 * 120.00150 * 179.72567 * 21 6 4 23 23 C 1.38227 * 120.00317 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46972 * 90.00284 * 1 2 3 25 25 H 1.09000 * 109.46874 * 209.99878 * 1 2 3 26 26 H 1.08996 * 109.47230 * 330.00434 * 1 2 3 27 27 H 1.07997 * 120.00219 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.47047 * 269.97312 * 5 4 3 29 29 H 1.09001 * 109.47138 * 29.96769 * 5 4 3 30 30 H 1.08997 * 109.47438 * 149.97056 * 5 4 3 31 31 H 1.09001 * 109.47438 * 329.99961 * 7 6 4 32 32 H 1.09004 * 109.47113 * 210.00217 * 7 6 4 33 33 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 34 34 H 1.09004 * 109.47043 * 299.99952 * 11 9 8 35 35 H 1.09001 * 109.47324 * 59.99585 * 11 9 8 36 36 H 1.08996 * 109.46524 * 299.99867 * 12 11 9 37 37 H 1.08992 * 109.46876 * 59.99534 * 12 11 9 38 38 H 0.96999 * 120.00397 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47244 * 90.00097 * 22 21 6 40 40 H 1.08996 * 109.47283 * 209.99744 * 22 21 6 41 41 H 1.08998 * 109.47313 * 329.99935 * 22 21 6 42 42 H 1.08009 * 120.00051 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2716 0.0001 0.0017 7 6 5.7787 0.0001 0.0028 8 7 6.2660 0.0008 1.3845 9 6 7.5909 0.0004 1.6317 10 8 8.3797 0.0000 0.7105 11 6 8.0921 0.0005 3.0529 12 6 9.6221 0.0007 3.0542 13 6 10.1233 0.0002 4.4753 14 1 9.4208 0.0001 5.2957 15 6 11.4786 -0.0003 4.7283 16 7 12.3341 -0.0008 3.7294 17 14 12.0999 -0.0003 6.4900 18 1 10.9442 0.0009 7.4225 19 1 12.9242 -1.2131 6.7242 20 1 12.9252 1.2119 6.7238 21 6 3.5806 -1.1970 -0.0036 22 6 4.3341 -2.5021 -0.0087 23 6 2.1982 -1.1970 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6581 2.1325 -0.0004 28 1 4.5165 2.8170 -1.0264 29 1 3.7445 3.2620 0.5144 30 1 5.2860 2.3721 0.5157 31 1 6.1424 0.8899 -0.5112 32 1 6.1425 -0.8901 -0.5103 33 1 5.6350 0.0007 2.1212 34 1 7.7286 0.8907 3.5663 35 1 7.7280 -0.8892 3.5667 36 1 9.9859 -0.8893 2.5407 37 1 9.9857 0.8906 2.5406 38 1 13.2876 -0.0015 3.9074 39 1 4.5152 -2.8210 1.0178 40 1 3.7453 -3.2596 -0.5259 41 1 5.2867 -2.3697 -0.5215 42 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292619727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:43 Heat of formation + Delta-G solvation = -45.144059 kcal Electronic energy + Delta-G solvation = -20533.990572 eV Core-core repulsion = 17477.559211 eV Total energy + Delta-G solvation = -3056.431362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29158 -38.84723 -35.28816 -33.77749 -33.42056 -32.97966 -30.96269 -28.55137 -28.07173 -26.90095 -25.78820 -24.16365 -21.52918 -20.96249 -20.22315 -19.58335 -16.97861 -16.53090 -16.17532 -15.61641 -15.13255 -14.83037 -14.48451 -14.41811 -14.20543 -13.48203 -13.37947 -13.28539 -13.10738 -13.05253 -12.79186 -12.66080 -12.54490 -12.15443 -11.98629 -11.67240 -11.41994 -11.13247 -11.06268 -10.94150 -10.92323 -10.56180 -9.93256 -9.64140 -9.23342 -9.04664 -8.73885 -8.69856 -8.56136 -8.30279 -5.94338 -3.98521 1.06011 1.19169 3.30333 3.33670 3.33780 3.40892 3.44314 3.89981 4.49514 4.50187 4.53626 4.61926 4.75231 4.96947 5.08455 5.21472 5.28921 5.33316 5.35408 5.40645 5.42662 5.51161 5.56357 5.59401 5.60710 5.75591 5.78406 5.87945 6.08195 6.12013 6.26381 6.28097 6.33054 6.36943 6.54018 6.74641 6.84862 6.93125 7.77022 7.89223 7.95017 8.09635 8.41220 8.82714 9.10548 9.64976 11.16668 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.003054 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.138626 B = 9166.831374 C = 9213.698488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 C -0.131 4.131 4 C -0.057 4.057 5 C -0.123 4.123 6 C -0.112 4.112 7 C 0.157 3.843 8 N -0.737 5.737 9 C 0.509 3.491 10 O -0.535 6.535 11 C -0.130 4.130 12 C 0.037 3.963 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.057 4.057 22 C -0.122 4.122 23 C -0.131 4.131 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.397 0.603 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.825 -0.010 -8.133 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.149 4.149 4 C -0.057 4.057 5 C -0.179 4.179 6 C -0.113 4.113 7 C 0.034 3.966 8 N -0.392 5.392 9 C 0.298 3.702 10 O -0.411 6.411 11 C -0.170 4.170 12 C -0.001 4.001 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.058 4.058 22 C -0.178 4.178 23 C -0.149 4.149 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.231 0.769 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.022 -0.009 -8.857 25.603 hybrid contribution -0.016 0.000 1.248 1.248 sum -24.038 -0.008 -7.608 25.214 Atomic orbital electron populations 1.20792 0.91268 1.02754 1.02263 1.19897 0.95936 0.93124 0.98670 1.20864 0.93333 0.97531 1.03210 1.19806 0.93576 0.94864 0.97491 1.20905 1.00642 0.93730 1.02647 1.19644 0.95058 0.92426 1.04131 1.20127 0.88565 1.02815 0.85132 1.46254 1.07671 1.77887 1.07347 1.21575 0.80920 0.74448 0.93295 1.90670 1.55086 1.48351 1.46971 1.21862 1.02516 1.02448 0.90124 1.18899 0.85823 0.98610 0.96735 1.21267 0.91721 1.51128 0.92270 0.92580 1.25028 0.97073 0.95361 0.96978 1.70009 1.01958 1.50380 1.30526 0.86542 0.78860 0.77568 0.85029 1.19754 1.21028 1.21035 1.19800 0.93584 0.94878 0.97511 1.20915 1.00328 0.93666 1.02913 1.20859 0.93327 0.97531 1.03210 0.91206 0.91557 0.91556 0.86142 0.90935 0.91449 0.90611 0.90996 0.90808 0.76921 0.90312 0.90307 0.95830 0.95829 0.93026 0.90701 0.91600 0.90767 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.08 -0.69 5.88 -104.63 -0.62 -1.31 16 3 C -0.13 -1.25 9.36 -39.58 -0.37 -1.62 16 4 C -0.06 -0.60 5.88 -104.62 -0.62 -1.22 16 5 C -0.12 -1.19 9.19 36.00 0.33 -0.86 16 6 C -0.11 -1.28 5.25 -104.63 -0.55 -1.83 16 7 C 0.16 2.09 4.59 -5.19 -0.02 2.07 16 8 N -0.74 -10.69 5.50 -61.47 -0.34 -11.03 16 9 C 0.51 9.88 7.83 -10.99 -0.09 9.79 16 10 O -0.54 -12.71 15.98 5.55 0.09 -12.62 16 11 C -0.13 -2.66 5.64 -27.88 -0.16 -2.82 16 12 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 13 C -0.53 -15.04 9.11 -34.44 -0.31 -15.36 16 14 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 17 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.06 -0.61 5.88 -104.63 -0.62 -1.22 16 22 C -0.12 -1.18 9.60 36.01 0.35 -0.83 16 23 C -0.13 -1.25 9.36 -39.59 -0.37 -1.62 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 26 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.07 0.85 6.66 -51.93 -0.35 0.50 16 31 H 0.07 1.01 6.70 -51.93 -0.35 0.66 16 32 H 0.07 1.03 5.94 -51.93 -0.31 0.72 16 33 H 0.40 4.89 8.46 -40.82 -0.35 4.54 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 41 H 0.07 0.78 5.94 -51.93 -0.31 0.47 16 42 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -33.83 348.06 -8.86 -42.70 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.68 Total: 0.57 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.89 Total: -14.75 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.40 Total: -37.94 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.83 -8.86 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292619727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.449 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds