Wall clock time and date at job start Mon Mar 30 2020 02:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 119.99751 * 2 1 4 4 C 1.38241 * 120.00004 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00140 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99465 * 359.97181 * 4 3 2 7 7 C 1.50703 * 119.99520 * 180.02562 * 6 4 3 8 8 N 1.46506 * 109.47289 * 90.00180 * 7 6 4 9 9 C 1.34774 * 120.00072 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00066 * 0.02562 * 9 8 7 11 11 C 1.50696 * 119.99838 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.47353 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47353 * 180.02562 * 12 11 9 14 14 H 1.08007 * 120.00057 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99993 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00258 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00043 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47216 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.47057 * 239.99829 * 17 15 13 21 21 C 1.38228 * 120.00467 * 0.28169 * 6 4 3 22 22 C 1.50700 * 120.00150 * 179.72567 * 21 6 4 23 23 C 1.38227 * 120.00317 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46972 * 90.00284 * 1 2 3 25 25 H 1.09000 * 109.46874 * 209.99878 * 1 2 3 26 26 H 1.08996 * 109.47230 * 330.00434 * 1 2 3 27 27 H 1.07997 * 120.00219 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.47047 * 269.97312 * 5 4 3 29 29 H 1.09001 * 109.47138 * 29.96769 * 5 4 3 30 30 H 1.08997 * 109.47438 * 149.97056 * 5 4 3 31 31 H 1.09001 * 109.47438 * 329.99961 * 7 6 4 32 32 H 1.09004 * 109.47113 * 210.00217 * 7 6 4 33 33 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 34 34 H 1.09004 * 109.47043 * 299.99952 * 11 9 8 35 35 H 1.09001 * 109.47324 * 59.99585 * 11 9 8 36 36 H 1.08996 * 109.46524 * 299.99867 * 12 11 9 37 37 H 1.08992 * 109.46876 * 59.99534 * 12 11 9 38 38 H 0.96999 * 120.00397 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.47244 * 90.00097 * 22 21 6 40 40 H 1.08996 * 109.47283 * 209.99744 * 22 21 6 41 41 H 1.08998 * 109.47313 * 329.99935 * 22 21 6 42 42 H 1.08009 * 120.00051 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2716 0.0001 0.0017 7 6 5.7787 0.0001 0.0028 8 7 6.2660 0.0008 1.3845 9 6 7.5909 0.0004 1.6317 10 8 8.3797 0.0000 0.7105 11 6 8.0921 0.0005 3.0529 12 6 9.6221 0.0007 3.0542 13 6 10.1233 0.0002 4.4753 14 1 9.4208 0.0001 5.2957 15 6 11.4786 -0.0003 4.7283 16 7 12.3341 -0.0008 3.7294 17 14 12.0999 -0.0003 6.4900 18 1 10.9442 0.0009 7.4225 19 1 12.9242 -1.2131 6.7242 20 1 12.9252 1.2119 6.7238 21 6 3.5806 -1.1970 -0.0036 22 6 4.3341 -2.5021 -0.0087 23 6 2.1982 -1.1970 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6581 2.1325 -0.0004 28 1 4.5165 2.8170 -1.0264 29 1 3.7445 3.2620 0.5144 30 1 5.2860 2.3721 0.5157 31 1 6.1424 0.8899 -0.5112 32 1 6.1425 -0.8901 -0.5103 33 1 5.6350 0.0007 2.1212 34 1 7.7286 0.8907 3.5663 35 1 7.7280 -0.8892 3.5667 36 1 9.9859 -0.8893 2.5407 37 1 9.9857 0.8906 2.5406 38 1 13.2876 -0.0015 3.9074 39 1 4.5152 -2.8210 1.0178 40 1 3.7453 -3.2596 -0.5259 41 1 5.2867 -2.3697 -0.5215 42 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292619727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:42 Heat of formation + Delta-G solvation = -65.680127 kcal Electronic energy + Delta-G solvation = -20534.881083 eV Core-core repulsion = 17477.559211 eV Total energy + Delta-G solvation = -3057.321873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24115 -40.26125 -36.40814 -35.53899 -34.54099 -34.06065 -32.92479 -29.60435 -28.83470 -27.63374 -27.57001 -25.33284 -23.40155 -21.72164 -21.30075 -20.89514 -18.84495 -17.65004 -17.42405 -17.15568 -16.41849 -16.35960 -16.15907 -15.21655 -15.08481 -14.65122 -14.61924 -14.18172 -14.09535 -13.98550 -13.89685 -13.71038 -13.61190 -13.45256 -13.21801 -12.97604 -12.82444 -12.52815 -12.44759 -12.14525 -11.92495 -11.82068 -11.74777 -11.62792 -11.28236 -10.81047 -10.57678 -10.06256 -9.47381 -9.42197 -8.17797 -6.31767 0.26424 0.43790 1.42306 1.43745 1.57110 1.72163 2.27093 2.44735 2.85055 3.15202 3.64602 3.80453 3.91841 3.98442 4.08329 4.14696 4.38335 4.47630 4.52971 4.55688 4.61381 4.63921 4.68125 4.74205 4.77506 4.81147 4.87201 4.95150 5.02589 5.08435 5.13594 5.34496 5.35722 5.42422 5.51756 5.56513 5.64019 5.66469 5.73523 5.86130 6.10434 6.18263 6.60338 6.86921 7.33722 7.38636 8.95128 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.003054 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.138626 B = 9166.831374 C = 9213.698488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.065 4.065 5 C -0.121 4.121 6 C -0.128 4.128 7 C 0.161 3.839 8 N -0.711 5.711 9 C 0.513 3.487 10 O -0.588 6.588 11 C -0.119 4.119 12 C 0.042 3.958 13 C -0.541 4.541 14 H 0.075 0.925 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.974 3.026 18 H -0.253 1.253 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.065 4.065 22 C -0.121 4.121 23 C -0.137 4.137 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.139 0.861 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.412 0.588 34 H 0.103 0.897 35 H 0.103 0.897 36 H -0.017 1.017 37 H -0.017 1.017 38 H 0.263 0.737 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.828 -0.018 -6.480 28.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.075 4.075 3 C -0.155 4.155 4 C -0.065 4.065 5 C -0.177 4.177 6 C -0.129 4.129 7 C 0.038 3.962 8 N -0.363 5.363 9 C 0.301 3.699 10 O -0.468 6.468 11 C -0.158 4.158 12 C 0.005 3.995 13 C -0.579 4.579 14 H 0.093 0.907 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.798 3.202 18 H -0.176 1.176 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.065 4.065 22 C -0.177 4.177 23 C -0.155 4.155 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.157 0.843 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.248 0.752 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.077 0.923 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -27.103 -0.017 -7.186 28.040 hybrid contribution 0.817 0.004 0.656 1.048 sum -26.286 -0.013 -6.530 27.085 Atomic orbital electron populations 1.20850 0.89177 1.03760 1.03178 1.20278 0.97521 0.92719 0.97013 1.21118 0.92848 0.98716 1.02784 1.19946 0.94340 0.94665 0.97554 1.20891 0.99895 0.94036 1.02906 1.19477 0.93445 0.93469 1.06482 1.20102 0.90338 1.01960 0.83755 1.45956 1.06109 1.75487 1.08792 1.21326 0.82113 0.74197 0.92253 1.90656 1.56800 1.51211 1.48118 1.21634 0.97889 1.04746 0.91576 1.18686 0.90489 0.94739 0.95602 1.21741 0.92478 1.50603 0.93115 0.90666 1.26143 0.97460 0.94676 1.02236 1.70185 1.02446 1.51586 1.33599 0.85267 0.78608 0.77564 0.78766 1.17623 1.20599 1.20615 1.19941 0.94341 0.94682 0.97549 1.20912 0.99882 0.93989 1.02939 1.21116 0.92853 0.98713 1.02783 0.90210 0.90593 0.90590 0.84270 0.90527 0.89804 0.92508 0.91952 0.91638 0.75166 0.87901 0.87874 0.99895 0.99898 0.92855 0.90699 0.89822 0.92252 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 71.24 0.71 -0.36 16 2 C -0.08 -1.16 5.88 -19.87 -0.12 -1.27 16 3 C -0.14 -2.28 9.36 22.27 0.21 -2.07 16 4 C -0.06 -1.29 5.88 -19.87 -0.12 -1.40 16 5 C -0.12 -2.24 9.19 71.23 0.65 -1.58 16 6 C -0.13 -2.85 5.25 -19.87 -0.10 -2.95 16 7 C 0.16 4.38 4.59 85.63 0.39 4.77 16 8 N -0.71 -20.51 5.50 -466.77 -2.57 -23.07 16 9 C 0.51 20.34 7.83 87.66 0.69 21.02 16 10 O -0.59 -29.43 15.98 -3.04 -0.05 -29.48 16 11 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 12 C 0.04 2.40 4.26 29.85 0.13 2.53 16 13 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 14 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 15 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 16 N -0.94 -60.10 13.29 21.44 0.28 -59.82 16 17 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 18 H -0.25 -10.69 7.11 99.48 0.71 -9.98 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 C -0.06 -1.28 5.88 -19.87 -0.12 -1.40 16 22 C -0.12 -2.23 9.60 71.24 0.68 -1.54 16 23 C -0.14 -2.28 9.36 22.27 0.21 -2.07 16 24 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 26 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 27 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.24 8.09 -2.39 -0.02 1.22 16 30 H 0.06 1.26 6.66 -2.39 -0.02 1.24 16 31 H 0.06 1.82 6.70 -2.39 -0.02 1.81 16 32 H 0.07 1.91 5.94 -2.38 -0.01 1.90 16 33 H 0.41 9.59 8.46 -92.71 -0.78 8.80 16 34 H 0.10 3.72 8.14 -2.38 -0.02 3.70 16 35 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 36 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 37 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 38 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 39 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 41 H 0.06 1.26 5.94 -2.39 -0.01 1.25 16 42 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -76.13 348.06 4.00 -72.13 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.22 Total: 15.49 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 4.08 Total: -21.97 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -2.28 Total: -82.89 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.05 Total: -29.48 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -76.13 4.00 -72.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292619727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.451 kcal (2) G-P(sol) polarization free energy of solvation -76.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds