Wall clock time and date at job start Mon Mar 30 2020 02:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 120.00363 * 2 1 4 4 C 1.38203 * 120.00069 * 180.27961 * 3 2 1 5 5 C 1.38255 * 120.00131 * 359.74912 * 4 3 2 6 6 C 1.38216 * 119.99974 * 359.97438 * 5 4 3 7 7 C 1.38219 * 119.99837 * 179.75751 * 2 1 3 8 8 C 1.50695 * 119.99931 * 359.97438 * 7 2 1 9 9 C 1.52999 * 109.47378 * 277.17685 * 8 7 2 10 10 H 1.09009 * 109.47294 * 55.76833 * 9 8 7 11 11 C 1.53002 * 109.47516 * 175.77256 * 9 8 7 12 12 N 1.46501 * 109.47182 * 295.77265 * 9 8 7 13 13 C 1.34777 * 120.00430 * 154.69986 * 12 9 8 14 14 O 1.21285 * 119.99779 * 0.02562 * 13 12 9 15 15 C 1.50695 * 120.00388 * 179.97438 * 13 12 9 16 16 C 1.53003 * 109.47320 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46890 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00212 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99648 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99874 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99802 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46915 * 60.00122 * 21 19 17 23 23 H 1.48497 * 109.46967 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47383 * 300.00036 * 21 19 17 25 25 H 1.09003 * 109.46743 * 265.94897 * 1 2 3 26 26 H 1.08999 * 109.47128 * 25.94214 * 1 2 3 27 27 H 1.08994 * 109.47481 * 145.95157 * 1 2 3 28 28 H 1.08005 * 119.99823 * 0.04886 * 3 2 1 29 29 H 1.08004 * 120.00168 * 179.77452 * 4 3 2 30 30 H 1.08002 * 120.00575 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.99976 * 179.97438 * 6 5 4 32 32 H 1.08997 * 109.47226 * 157.17583 * 8 7 2 33 33 H 1.09001 * 109.47718 * 37.17502 * 8 7 2 34 34 H 1.09001 * 109.46786 * 299.99869 * 11 9 8 35 35 H 1.08997 * 109.47059 * 59.99883 * 11 9 8 36 36 H 1.09002 * 109.47089 * 179.97438 * 11 9 8 37 37 H 0.97001 * 119.99927 * 334.70744 * 12 9 8 38 38 H 1.09002 * 109.47045 * 300.00529 * 15 13 12 39 39 H 1.09001 * 109.46949 * 60.00245 * 15 13 12 40 40 H 1.08992 * 109.46979 * 300.00349 * 16 15 13 41 41 H 1.09001 * 109.46934 * 60.00206 * 16 15 13 42 42 H 0.96998 * 119.99360 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0058 5 6 4.2717 -0.0001 -0.0064 6 6 3.5806 -1.1971 -0.0007 7 6 2.1981 -1.1970 0.0051 8 6 1.4446 -2.5020 0.0112 9 6 1.0340 -2.8473 1.4441 10 1 0.4581 -2.0233 1.8656 11 6 0.1793 -4.1163 1.4381 12 7 2.2333 -3.0701 2.2554 13 6 2.1885 -2.8842 3.5896 14 8 1.1552 -2.5328 4.1185 15 6 3.4220 -3.1140 4.4242 16 6 3.1022 -2.8356 5.8943 17 6 4.3359 -3.0648 6.7289 18 1 5.2559 -3.3781 6.2580 19 6 4.2898 -2.8755 8.0939 20 7 3.1690 -2.4954 8.6675 21 14 5.8188 -3.1603 9.1284 22 1 6.8996 -2.2479 8.6760 23 1 5.5085 -2.8900 10.5552 24 1 6.2641 -4.5688 8.9764 25 1 -0.3633 -0.0726 1.0251 26 1 -0.3633 0.9241 -0.4496 27 1 -0.3634 -0.8514 -0.5753 28 1 1.6584 2.1327 0.0008 29 1 4.1205 2.1325 -0.0095 30 1 5.3517 -0.0002 -0.0114 31 1 4.1205 -2.1324 -0.0016 32 1 2.0830 -3.2921 -0.3842 33 1 0.5535 -2.4101 -0.6098 34 1 -0.7130 -3.9504 0.8344 35 1 0.7551 -4.9402 1.0166 36 1 -0.1128 -4.3624 2.4590 37 1 3.0596 -3.3514 1.8324 38 1 3.7483 -4.1481 4.3132 39 1 4.2155 -2.4449 4.0916 40 1 2.7756 -1.8017 6.0056 41 1 2.3087 -3.5050 6.2266 42 1 3.1368 -2.3619 9.6277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292801753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:57 Heat of formation + Delta-G solvation = -43.675967 kcal Electronic energy + Delta-G solvation = -21025.416517 eV Core-core repulsion = 17969.048816 eV Total energy + Delta-G solvation = -3056.367701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.99242 -38.90228 -35.91442 -33.39458 -33.07531 -31.97829 -31.11940 -30.04781 -27.41973 -26.20707 -25.64833 -22.57009 -22.02399 -21.14054 -20.29386 -19.57423 -16.88133 -16.51387 -16.12441 -15.62865 -15.26885 -15.12710 -14.68318 -14.39754 -14.02945 -13.70174 -13.24581 -13.18795 -13.05200 -12.60219 -12.50646 -12.23324 -12.17285 -12.03682 -11.95118 -11.73552 -11.11926 -11.05615 -10.93434 -10.86305 -10.79293 -10.58814 -9.90088 -9.60926 -9.12568 -8.94219 -8.82657 -8.73206 -8.55712 -8.28142 -5.92573 -3.96782 1.31118 1.35266 3.35872 3.36721 3.40860 3.42569 3.63408 3.70349 4.50347 4.59449 4.70730 4.85303 4.88942 4.96510 5.12100 5.21808 5.31515 5.42171 5.42691 5.48444 5.55954 5.62229 5.63154 5.69987 5.75826 5.76478 6.01108 6.04952 6.17789 6.26617 6.30642 6.31736 6.43238 6.47445 6.59269 6.88930 6.95730 6.97939 7.78022 7.91531 7.99974 8.11643 8.43221 8.89016 9.12039 9.66391 11.18407 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.004055 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.271129 B = 6903.981572 C = 7594.901567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.082 4.082 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.123 4.123 6 C -0.110 4.110 7 C -0.079 4.079 8 C -0.090 4.090 9 C 0.146 3.854 10 H 0.087 0.913 11 C -0.163 4.163 12 N -0.736 5.736 13 C 0.512 3.488 14 O -0.536 6.536 15 C -0.130 4.130 16 C 0.038 3.962 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.394 0.606 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 2.449 -22.842 23.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.082 4.082 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.141 4.141 6 C -0.128 4.128 7 C -0.079 4.079 8 C -0.127 4.127 9 C 0.041 3.959 10 H 0.105 0.895 11 C -0.222 4.222 12 N -0.389 5.389 13 C 0.300 3.700 14 O -0.412 6.412 15 C -0.170 4.170 16 C 0.001 3.999 17 C -0.565 4.565 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.227 0.773 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.137 2.756 -22.258 22.647 hybrid contribution 1.350 -0.210 0.449 1.438 sum -1.787 2.547 -21.809 22.030 Atomic orbital electron populations 1.20877 0.91395 1.02490 1.02757 1.19753 0.95992 0.92700 0.99765 1.21006 0.94333 0.97373 1.01007 1.21104 0.94313 0.98072 1.00451 1.21108 0.99833 0.92575 1.00548 1.20986 0.93456 0.98076 1.00287 1.19630 0.93678 0.94310 1.00242 1.20965 1.00583 0.94365 0.96802 1.20801 0.87409 0.98168 0.89528 0.89504 1.22193 0.99452 0.97594 1.02919 1.46227 1.13080 1.71932 1.07700 1.21488 0.91549 0.75408 0.81541 1.90653 1.33094 1.45574 1.71863 1.21851 0.93809 1.02088 0.99273 1.18875 0.96727 0.98103 0.86215 1.21197 0.96621 1.46449 0.92238 0.92718 1.25019 0.95959 0.95302 0.98054 1.69993 1.25710 1.46609 1.10572 0.86662 0.83390 0.78628 0.79305 1.20275 1.21288 1.20264 0.90754 0.91788 0.91292 0.86302 0.86308 0.86186 0.86267 0.90633 0.89488 0.92091 0.92617 0.91654 0.77292 0.90432 0.90445 0.95917 0.95892 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.12 36.01 0.33 -0.79 16 2 C -0.08 -0.93 5.88 -104.62 -0.62 -1.55 16 3 C -0.12 -1.33 9.69 -39.59 -0.38 -1.72 16 4 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 5 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 6 C -0.11 -1.19 9.52 -39.59 -0.38 -1.57 16 7 C -0.08 -0.87 4.85 -104.63 -0.51 -1.38 16 8 C -0.09 -0.85 4.38 -27.89 -0.12 -0.97 16 9 C 0.15 1.82 2.55 -67.93 -0.17 1.65 16 10 H 0.09 1.30 6.77 -51.92 -0.35 0.95 16 11 C -0.16 -1.87 9.49 37.16 0.35 -1.52 16 12 N -0.74 -10.54 4.72 -53.80 -0.25 -10.79 16 13 C 0.51 10.09 7.80 -10.99 -0.09 10.01 16 14 O -0.54 -12.88 15.64 5.55 0.09 -12.80 16 15 C -0.13 -2.73 5.64 -27.88 -0.16 -2.89 16 16 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 17 C -0.53 -15.22 9.11 -34.44 -0.31 -15.53 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 21 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 26 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 27 H 0.07 0.55 6.24 -51.93 -0.32 0.22 16 28 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 29 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 1.06 8.05 -52.49 -0.42 0.64 16 32 H 0.08 0.60 8.03 -51.93 -0.42 0.19 16 33 H 0.09 0.69 6.32 -51.93 -0.33 0.36 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.39 4.57 8.50 -40.82 -0.35 4.22 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -34.78 349.19 -9.03 -43.81 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.78 Total: 1.85 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -3.06 Total: -17.15 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.48 Total: -37.89 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.78 -9.03 -43.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292801753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.134 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds