Wall clock time and date at job start Mon Mar 30 2020 02:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38258 * 120.00363 * 2 1 4 4 C 1.38203 * 120.00069 * 180.27961 * 3 2 1 5 5 C 1.38255 * 120.00131 * 359.74912 * 4 3 2 6 6 C 1.38216 * 119.99974 * 359.97438 * 5 4 3 7 7 C 1.38219 * 119.99837 * 179.75751 * 2 1 3 8 8 C 1.50695 * 119.99931 * 359.97438 * 7 2 1 9 9 C 1.52999 * 109.47378 * 277.17685 * 8 7 2 10 10 H 1.09009 * 109.47294 * 55.76833 * 9 8 7 11 11 C 1.53002 * 109.47516 * 175.77256 * 9 8 7 12 12 N 1.46501 * 109.47182 * 295.77265 * 9 8 7 13 13 C 1.34777 * 120.00430 * 154.69986 * 12 9 8 14 14 O 1.21285 * 119.99779 * 0.02562 * 13 12 9 15 15 C 1.50695 * 120.00388 * 179.97438 * 13 12 9 16 16 C 1.53003 * 109.47320 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.46890 * 180.02562 * 16 15 13 18 18 H 1.07994 * 120.00212 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99648 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99874 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99802 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46915 * 60.00122 * 21 19 17 23 23 H 1.48497 * 109.46967 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47383 * 300.00036 * 21 19 17 25 25 H 1.09003 * 109.46743 * 265.94897 * 1 2 3 26 26 H 1.08999 * 109.47128 * 25.94214 * 1 2 3 27 27 H 1.08994 * 109.47481 * 145.95157 * 1 2 3 28 28 H 1.08005 * 119.99823 * 0.04886 * 3 2 1 29 29 H 1.08004 * 120.00168 * 179.77452 * 4 3 2 30 30 H 1.08002 * 120.00575 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.99976 * 179.97438 * 6 5 4 32 32 H 1.08997 * 109.47226 * 157.17583 * 8 7 2 33 33 H 1.09001 * 109.47718 * 37.17502 * 8 7 2 34 34 H 1.09001 * 109.46786 * 299.99869 * 11 9 8 35 35 H 1.08997 * 109.47059 * 59.99883 * 11 9 8 36 36 H 1.09002 * 109.47089 * 179.97438 * 11 9 8 37 37 H 0.97001 * 119.99927 * 334.70744 * 12 9 8 38 38 H 1.09002 * 109.47045 * 300.00529 * 15 13 12 39 39 H 1.09001 * 109.46949 * 60.00245 * 15 13 12 40 40 H 1.08992 * 109.46979 * 300.00349 * 16 15 13 41 41 H 1.09001 * 109.46934 * 60.00206 * 16 15 13 42 42 H 0.96998 * 119.99360 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 -0.0058 5 6 4.2717 -0.0001 -0.0064 6 6 3.5806 -1.1971 -0.0007 7 6 2.1981 -1.1970 0.0051 8 6 1.4446 -2.5020 0.0112 9 6 1.0340 -2.8473 1.4441 10 1 0.4581 -2.0233 1.8656 11 6 0.1793 -4.1163 1.4381 12 7 2.2333 -3.0701 2.2554 13 6 2.1885 -2.8842 3.5896 14 8 1.1552 -2.5328 4.1185 15 6 3.4220 -3.1140 4.4242 16 6 3.1022 -2.8356 5.8943 17 6 4.3359 -3.0648 6.7289 18 1 5.2559 -3.3781 6.2580 19 6 4.2898 -2.8755 8.0939 20 7 3.1690 -2.4954 8.6675 21 14 5.8188 -3.1603 9.1284 22 1 6.8996 -2.2479 8.6760 23 1 5.5085 -2.8900 10.5552 24 1 6.2641 -4.5688 8.9764 25 1 -0.3633 -0.0726 1.0251 26 1 -0.3633 0.9241 -0.4496 27 1 -0.3634 -0.8514 -0.5753 28 1 1.6584 2.1327 0.0008 29 1 4.1205 2.1325 -0.0095 30 1 5.3517 -0.0002 -0.0114 31 1 4.1205 -2.1324 -0.0016 32 1 2.0830 -3.2921 -0.3842 33 1 0.5535 -2.4101 -0.6098 34 1 -0.7130 -3.9504 0.8344 35 1 0.7551 -4.9402 1.0166 36 1 -0.1128 -4.3624 2.4590 37 1 3.0596 -3.3514 1.8324 38 1 3.7483 -4.1481 4.3132 39 1 4.2155 -2.4449 4.0916 40 1 2.7756 -1.8017 6.0056 41 1 2.3087 -3.5050 6.2266 42 1 3.1368 -2.3619 9.6277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292801753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:56 Heat of formation + Delta-G solvation = -65.007348 kcal Electronic energy + Delta-G solvation = -21026.341515 eV Core-core repulsion = 17969.048816 eV Total energy + Delta-G solvation = -3057.292699 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06466 -40.15135 -37.10349 -35.53689 -34.02160 -33.22190 -32.64891 -31.32753 -28.20628 -27.68529 -26.99660 -24.18070 -22.97116 -22.35327 -21.25366 -21.14217 -18.82270 -17.53675 -17.39831 -17.04679 -16.49709 -16.42517 -16.11022 -15.87203 -15.03839 -14.72519 -14.68262 -14.29851 -14.21114 -13.94985 -13.75806 -13.31936 -13.25198 -13.22722 -13.02193 -12.81161 -12.77543 -12.66991 -12.49012 -11.96341 -11.89448 -11.75919 -11.62576 -11.59925 -11.31974 -10.65229 -10.56173 -10.01389 -9.64455 -9.41047 -8.17680 -6.32085 0.48798 0.53507 1.41623 1.46467 1.54195 1.78639 2.31697 2.46697 2.87627 3.15058 3.77582 3.91882 3.98332 4.10815 4.14725 4.21580 4.33913 4.42712 4.43997 4.52224 4.56825 4.58625 4.73389 4.77921 4.82649 4.87347 4.95012 4.99268 5.04016 5.15117 5.23031 5.33495 5.37951 5.48336 5.59976 5.63269 5.65567 5.67540 5.81095 5.85713 6.17980 6.19587 6.68729 6.86212 7.37927 7.43518 8.94925 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.004055 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.271129 B = 6903.981572 C = 7594.901567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.101 4.101 3 C -0.138 4.138 4 C -0.135 4.135 5 C -0.137 4.137 6 C -0.119 4.119 7 C -0.093 4.093 8 C -0.078 4.078 9 C 0.144 3.856 10 H 0.057 0.943 11 C -0.158 4.158 12 N -0.710 5.710 13 C 0.512 3.488 14 O -0.591 6.591 15 C -0.120 4.120 16 C 0.045 3.955 17 C -0.544 4.544 18 H 0.075 0.925 19 C -0.006 4.006 20 N -0.938 5.938 21 Si 0.974 3.026 22 H -0.263 1.263 23 H -0.287 1.287 24 H -0.261 1.261 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.412 0.588 38 H 0.103 0.897 39 H 0.098 0.902 40 H -0.022 1.022 41 H -0.019 1.019 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 1.289 -24.863 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.101 4.101 3 C -0.156 4.156 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.137 4.137 7 C -0.093 4.093 8 C -0.115 4.115 9 C 0.040 3.960 10 H 0.075 0.925 11 C -0.216 4.216 12 N -0.363 5.363 13 C 0.300 3.700 14 O -0.471 6.471 15 C -0.160 4.160 16 C 0.007 3.993 17 C -0.582 4.582 18 H 0.093 0.907 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.213 1.213 24 H -0.186 1.186 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.248 0.752 38 H 0.122 0.878 39 H 0.116 0.884 40 H -0.003 1.003 41 H 0.000 1.000 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.039 1.577 -24.358 24.431 hybrid contribution 0.667 0.197 1.020 1.234 sum -0.372 1.774 -23.338 23.408 Atomic orbital electron populations 1.20882 0.90480 1.03927 1.02017 1.20092 0.96995 0.93125 0.99853 1.21289 0.94861 0.98037 1.01383 1.21403 0.94501 0.99034 1.00318 1.21426 1.00875 0.92692 1.00446 1.21321 0.93587 0.99006 0.99792 1.19894 0.94146 0.94865 1.00430 1.20926 1.01838 0.94264 0.94469 1.20946 0.86368 0.97892 0.90827 0.92469 1.22147 1.00646 0.97516 1.01336 1.45957 1.14739 1.69719 1.05887 1.21231 0.90254 0.75250 0.83243 1.90641 1.34708 1.48424 1.73297 1.21621 0.95016 1.04088 0.95240 1.18653 0.95370 0.94352 0.90930 1.21687 0.97466 1.46145 0.92912 0.90657 1.26145 0.99724 0.94676 0.99820 1.70181 1.28715 1.47910 1.11013 0.85370 0.78646 0.79404 0.76807 1.18730 1.21275 1.18578 0.92516 0.90648 0.89614 0.85346 0.84933 0.84603 0.84143 0.88080 0.87431 0.89559 0.90465 0.95276 0.75151 0.87849 0.88351 1.00346 1.00016 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 9.12 71.24 0.65 -1.47 16 2 C -0.10 -2.20 5.88 -19.86 -0.12 -2.32 16 3 C -0.14 -3.02 9.69 22.27 0.22 -2.81 16 4 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 5 C -0.14 -2.75 10.05 22.27 0.22 -2.52 16 6 C -0.12 -2.30 9.52 22.27 0.21 -2.09 16 7 C -0.09 -1.89 4.85 -19.87 -0.10 -1.99 16 8 C -0.08 -1.23 4.38 29.85 0.13 -1.10 16 9 C 0.14 3.39 2.55 44.99 0.11 3.51 16 10 H 0.06 1.74 6.77 -2.38 -0.02 1.72 16 11 C -0.16 -3.35 9.49 71.98 0.68 -2.67 16 12 N -0.71 -19.29 4.72 -442.52 -2.09 -21.38 16 13 C 0.51 20.41 7.80 87.66 0.68 21.09 16 14 O -0.59 -29.88 15.64 -3.04 -0.05 -29.93 16 15 C -0.12 -4.98 5.64 29.85 0.17 -4.82 16 16 C 0.04 2.56 4.26 29.85 0.13 2.69 16 17 C -0.54 -31.62 9.11 25.60 0.23 -31.38 16 18 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 19 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 20 N -0.94 -60.56 13.29 21.45 0.28 -60.27 16 21 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 25 H 0.06 1.23 7.75 -2.39 -0.02 1.21 16 26 H 0.07 1.15 8.06 -2.39 -0.02 1.13 16 27 H 0.09 1.20 6.24 -2.39 -0.01 1.19 16 28 H 0.13 2.40 8.06 -2.91 -0.02 2.37 16 29 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.14 1.99 8.05 -2.91 -0.02 1.97 16 32 H 0.10 1.14 8.03 -2.39 -0.02 1.12 16 33 H 0.11 1.31 6.32 -2.39 -0.02 1.30 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.41 8.28 8.50 -92.71 -0.79 7.49 16 38 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 39 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 40 H -0.02 -1.43 8.10 -2.39 -0.02 -1.45 16 41 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 42 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -79.98 349.19 4.29 -75.69 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.21 Total: 17.44 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 3.91 Total: -28.40 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -1.80 Total: -81.65 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.05 Total: -29.93 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -79.98 4.29 -75.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292801753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.680 kcal (2) G-P(sol) polarization free energy of solvation -79.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds