Wall clock time and date at job start Mon Mar 30 2020 02:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 10 10 H 1.08995 * 109.47165 * 304.99824 * 9 8 7 11 11 C 1.53003 * 109.46857 * 184.99476 * 9 8 7 12 12 N 1.46503 * 109.46734 * 65.00164 * 9 8 7 13 13 C 1.34781 * 119.99288 * 204.99976 * 12 9 8 14 14 O 1.21272 * 120.00379 * 359.97438 * 13 12 9 15 15 C 1.50701 * 119.99819 * 179.97438 * 13 12 9 16 16 C 1.52993 * 109.47257 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47257 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00131 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00020 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99890 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00045 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47063 * 89.99894 * 21 19 17 23 23 H 1.48506 * 109.46952 * 209.99822 * 21 19 17 24 24 H 1.48501 * 109.47087 * 329.99519 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 28 28 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.99954 * 180.02562 * 6 5 4 32 32 H 1.09007 * 109.46764 * 204.99790 * 8 7 2 33 33 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 34 34 H 1.09000 * 109.47123 * 60.00354 * 11 9 8 35 35 H 1.09003 * 109.46959 * 180.02562 * 11 9 8 36 36 H 1.08995 * 109.47517 * 300.00132 * 11 9 8 37 37 H 0.96999 * 120.00432 * 24.99895 * 12 9 8 38 38 H 1.09003 * 109.47028 * 300.00390 * 15 13 12 39 39 H 1.09002 * 109.47328 * 59.99813 * 15 13 12 40 40 H 1.09003 * 109.47409 * 300.00144 * 16 15 13 41 41 H 1.08995 * 109.47319 * 60.00331 * 16 15 13 42 42 H 0.96999 * 119.99911 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0812 -2.8875 -1.4238 10 1 0.5317 -2.0705 -1.8913 11 6 0.2102 -4.1453 -1.4090 12 7 2.3058 -3.1504 -2.1837 13 6 2.3096 -3.0121 -3.5244 14 8 1.2993 -2.6705 -4.1016 15 6 3.5694 -3.2820 -4.3061 16 6 3.3045 -3.0527 -5.7954 17 6 4.5645 -3.3220 -6.5770 18 1 5.4644 -3.6258 -6.0629 19 6 4.5685 -3.1804 -7.9485 20 7 5.6682 -3.4149 -8.6306 21 14 3.0123 -2.6542 -8.8377 22 1 2.9739 -1.1728 -8.9337 23 1 3.0002 -3.2392 -10.2026 24 1 1.8256 -3.1324 -8.0837 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3517 0.0000 0.0005 31 1 4.1206 -2.1323 0.0012 32 1 2.0694 -3.2804 0.4497 33 1 0.5337 -2.3930 0.6002 34 1 -0.7009 -3.9498 -0.8436 35 1 -0.0483 -4.4202 -2.4316 36 1 0.7597 -4.9623 -0.9414 37 1 3.1138 -3.4240 -1.7220 38 1 4.3573 -2.6080 -3.9695 39 1 3.8818 -4.3141 -4.1469 40 1 2.5166 -3.7264 -6.1322 41 1 2.9925 -2.0205 -5.9542 42 1 5.6711 -3.3150 -9.5954 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292801766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:00 Heat of formation + Delta-G solvation = -40.597747 kcal Electronic energy + Delta-G solvation = -21078.631211 eV Core-core repulsion = 18022.396992 eV Total energy + Delta-G solvation = -3056.234219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.06214 -39.02051 -36.01634 -33.43060 -33.14980 -32.03850 -31.32466 -30.28489 -27.46270 -26.27778 -26.02660 -22.52299 -21.98040 -21.03835 -20.32962 -19.62482 -17.20473 -16.56305 -16.27558 -15.85301 -15.36406 -15.18529 -14.80747 -14.14851 -14.03233 -13.76095 -13.37431 -13.24670 -13.14125 -12.68872 -12.58850 -12.52768 -12.30941 -12.14646 -12.05981 -11.81464 -11.37669 -11.10774 -11.01681 -10.90737 -10.83820 -10.11992 -10.00220 -9.75181 -9.18013 -9.10947 -8.87344 -8.83452 -8.61066 -8.47882 -6.00542 -3.98848 1.26787 1.31123 3.21544 3.39858 3.46043 3.52686 3.57610 3.65915 4.53437 4.54002 4.66191 4.79787 4.84031 4.90669 5.07588 5.16252 5.25756 5.35158 5.35842 5.42632 5.48636 5.53283 5.58779 5.63252 5.67793 5.70923 5.96361 5.98453 6.09268 6.14435 6.15687 6.21585 6.39133 6.43996 6.54223 6.73891 6.78683 6.93715 7.40806 7.47805 7.80933 7.88200 8.53657 8.74954 9.02912 9.62866 11.12398 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.004291 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.591745 B = 6524.405471 C = 7057.504725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.083 4.083 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.109 4.109 7 C -0.080 4.080 8 C -0.090 4.090 9 C 0.146 3.854 10 H 0.087 0.913 11 C -0.163 4.163 12 N -0.734 5.734 13 C 0.512 3.488 14 O -0.542 6.542 15 C -0.123 4.123 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.905 5.905 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.395 0.605 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.201 4.619 23.204 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.083 4.083 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.127 4.127 7 C -0.080 4.080 8 C -0.128 4.128 9 C 0.041 3.959 10 H 0.105 0.895 11 C -0.222 4.222 12 N -0.387 5.387 13 C 0.301 3.699 14 O -0.418 6.418 15 C -0.162 4.162 16 C -0.036 4.036 17 C -0.561 4.561 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.544 5.544 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.229 0.771 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.879 4.867 22.589 24.755 hybrid contribution -0.151 0.220 -0.369 0.456 sum -9.030 5.087 22.220 24.518 Atomic orbital electron populations 1.20884 0.91428 1.02580 1.02666 1.19744 0.95957 0.92705 0.99869 1.21000 0.94340 0.97364 1.01100 1.21116 0.94298 0.98104 1.00363 1.21126 0.99925 0.92551 1.00401 1.20993 0.93447 0.98119 1.00130 1.19631 0.93691 0.94268 1.00403 1.20976 1.00762 0.94364 0.96674 1.20812 0.86733 0.97947 0.90379 0.89532 1.22193 0.99371 0.97702 1.02905 1.46201 1.13297 1.71804 1.07409 1.21465 0.91498 0.75417 0.81555 1.90634 1.35466 1.46268 1.69455 1.21655 0.93505 1.02733 0.98351 1.19351 0.97567 0.97311 0.89327 1.21126 0.96502 1.46582 0.91934 0.90979 1.24965 0.96034 0.94653 0.97560 1.69916 1.27190 1.49904 1.07343 0.86802 0.84790 0.79202 0.78805 1.20273 1.21454 1.18536 0.90871 0.91752 0.91240 0.86319 0.86274 0.86095 0.86225 0.90538 0.89393 0.92033 0.91705 0.92520 0.77087 0.89805 0.89757 0.95884 0.96365 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.41 36.01 0.34 -0.71 16 2 C -0.08 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 4 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 5 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 6 C -0.11 -1.15 9.33 -39.59 -0.37 -1.52 16 7 C -0.08 -0.85 4.89 -104.63 -0.51 -1.36 16 8 C -0.09 -0.80 4.39 -27.89 -0.12 -0.93 16 9 C 0.15 1.72 2.56 -67.93 -0.17 1.54 16 10 H 0.09 1.23 7.37 -51.93 -0.38 0.85 16 11 C -0.16 -1.76 9.48 37.16 0.35 -1.40 16 12 N -0.73 -9.90 4.66 -53.80 -0.25 -10.15 16 13 C 0.51 9.50 7.79 -10.98 -0.09 9.42 16 14 O -0.54 -12.18 15.64 5.56 0.09 -12.10 16 15 C -0.12 -2.44 5.64 -27.89 -0.16 -2.60 16 16 C 0.00 0.06 3.33 -27.89 -0.09 -0.03 16 17 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 21 Si 0.88 22.96 27.47 -169.99 -4.67 18.29 16 22 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.26 -6.82 6.54 56.52 0.37 -6.45 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.47 8.09 -51.93 -0.42 0.06 16 27 H 0.07 0.51 6.02 -51.93 -0.31 0.20 16 28 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.12 1.04 7.97 -52.48 -0.42 0.62 16 32 H 0.08 0.58 8.05 -51.92 -0.42 0.16 16 33 H 0.09 0.65 6.16 -51.93 -0.32 0.33 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.40 4.30 8.32 -40.82 -0.34 3.96 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 41 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -34.77 346.11 -8.66 -43.43 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.76 Total: 0.61 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -3.05 Total: -17.71 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.52 Total: -37.73 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.67 Total: 18.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.77 -8.66 -43.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292801766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.828 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds