Wall clock time and date at job start Mon Mar 30 2020 02:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00052 * 359.96186 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47313 * 84.99738 * 8 7 2 10 10 H 1.08995 * 109.47165 * 304.99824 * 9 8 7 11 11 C 1.53003 * 109.46857 * 184.99476 * 9 8 7 12 12 N 1.46503 * 109.46734 * 65.00164 * 9 8 7 13 13 C 1.34781 * 119.99288 * 204.99976 * 12 9 8 14 14 O 1.21272 * 120.00379 * 359.97438 * 13 12 9 15 15 C 1.50701 * 119.99819 * 179.97438 * 13 12 9 16 16 C 1.52993 * 109.47257 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47257 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00131 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00020 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99890 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00045 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47063 * 89.99894 * 21 19 17 23 23 H 1.48506 * 109.46952 * 209.99822 * 21 19 17 24 24 H 1.48501 * 109.47087 * 329.99519 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 28 28 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 30 30 H 1.07999 * 119.99661 * 179.97438 * 5 4 3 31 31 H 1.08005 * 119.99954 * 180.02562 * 6 5 4 32 32 H 1.09007 * 109.46764 * 204.99790 * 8 7 2 33 33 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 34 34 H 1.09000 * 109.47123 * 60.00354 * 11 9 8 35 35 H 1.09003 * 109.46959 * 180.02562 * 11 9 8 36 36 H 1.08995 * 109.47517 * 300.00132 * 11 9 8 37 37 H 0.96999 * 120.00432 * 24.99895 * 12 9 8 38 38 H 1.09003 * 109.47028 * 300.00390 * 15 13 12 39 39 H 1.09002 * 109.47328 * 59.99813 * 15 13 12 40 40 H 1.09003 * 109.47409 * 300.00144 * 16 15 13 41 41 H 1.08995 * 109.47319 * 60.00331 * 16 15 13 42 42 H 0.96999 * 119.99911 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0008 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0812 -2.8875 -1.4238 10 1 0.5317 -2.0705 -1.8913 11 6 0.2102 -4.1453 -1.4090 12 7 2.3058 -3.1504 -2.1837 13 6 2.3096 -3.0121 -3.5244 14 8 1.2993 -2.6705 -4.1016 15 6 3.5694 -3.2820 -4.3061 16 6 3.3045 -3.0527 -5.7954 17 6 4.5645 -3.3220 -6.5770 18 1 5.4644 -3.6258 -6.0629 19 6 4.5685 -3.1804 -7.9485 20 7 5.6682 -3.4149 -8.6306 21 14 3.0123 -2.6542 -8.8377 22 1 2.9739 -1.1728 -8.9337 23 1 3.0002 -3.2392 -10.2026 24 1 1.8256 -3.1324 -8.0837 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6583 2.1327 -0.0004 29 1 4.1204 2.1327 0.0001 30 1 5.3517 0.0000 0.0005 31 1 4.1206 -2.1323 0.0012 32 1 2.0694 -3.2804 0.4497 33 1 0.5337 -2.3930 0.6002 34 1 -0.7009 -3.9498 -0.8436 35 1 -0.0483 -4.4202 -2.4316 36 1 0.7597 -4.9623 -0.9414 37 1 3.1138 -3.4240 -1.7220 38 1 4.3573 -2.6080 -3.9695 39 1 3.8818 -4.3141 -4.1469 40 1 2.5166 -3.7264 -6.1322 41 1 2.9925 -2.0205 -5.9542 42 1 5.6711 -3.3150 -9.5954 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292801766.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:00 Heat of formation + Delta-G solvation = -61.730749 kcal Electronic energy + Delta-G solvation = -21079.547606 eV Core-core repulsion = 18022.396992 eV Total energy + Delta-G solvation = -3057.150615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.08283 -40.17002 -37.12076 -35.52399 -34.04119 -33.39651 -32.76371 -31.41649 -28.19590 -27.96640 -27.00255 -23.88367 -22.92861 -22.28348 -21.25216 -21.14188 -19.21548 -17.67459 -17.39624 -17.06817 -16.47435 -16.33098 -16.10658 -15.87158 -15.08809 -14.84146 -14.65764 -14.57226 -14.38417 -13.95692 -13.78925 -13.41152 -13.35751 -13.27064 -13.02869 -12.90838 -12.78160 -12.63996 -12.10567 -11.98349 -11.92697 -11.77361 -11.76504 -11.59277 -11.40624 -10.79018 -10.69065 -10.03020 -9.64861 -9.41259 -8.32450 -6.35058 0.48324 0.52954 1.31650 1.33352 1.48796 1.75319 2.32679 2.34070 2.87161 3.03267 3.76853 3.91884 3.96738 4.08963 4.13120 4.20036 4.33316 4.40264 4.42494 4.43791 4.51023 4.58360 4.74613 4.78198 4.82592 4.87569 4.94177 4.97993 5.01452 5.11906 5.22729 5.32550 5.34461 5.38327 5.44155 5.58420 5.61072 5.65174 5.67408 5.80969 6.19093 6.23026 6.65630 6.71089 7.30344 7.38621 8.83334 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.004291 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.591745 B = 6524.405471 C = 7057.504725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.099 4.099 3 C -0.137 4.137 4 C -0.134 4.134 5 C -0.138 4.138 6 C -0.120 4.120 7 C -0.093 4.093 8 C -0.079 4.079 9 C 0.145 3.855 10 H 0.061 0.939 11 C -0.159 4.159 12 N -0.711 5.711 13 C 0.515 3.485 14 O -0.587 6.587 15 C -0.118 4.118 16 C 0.007 3.993 17 C -0.529 4.529 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.943 5.943 21 Si 0.937 3.063 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.263 1.263 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.009 0.991 41 H 0.004 0.996 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.119 4.354 25.105 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.099 4.099 3 C -0.155 4.155 4 C -0.152 4.152 5 C -0.156 4.156 6 C -0.138 4.138 7 C -0.093 4.093 8 C -0.117 4.117 9 C 0.041 3.959 10 H 0.079 0.921 11 C -0.217 4.217 12 N -0.364 5.364 13 C 0.303 3.697 14 O -0.467 6.467 15 C -0.157 4.157 16 C -0.031 4.031 17 C -0.567 4.567 18 H 0.068 0.932 19 C -0.182 4.182 20 N -0.584 5.584 21 Si 0.761 3.239 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.187 1.187 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.248 0.752 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.028 0.972 41 H 0.023 0.977 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.777 4.591 24.548 26.819 hybrid contribution 0.205 0.314 -0.882 0.958 sum -9.572 4.905 23.666 25.995 Atomic orbital electron populations 1.20900 0.90280 1.03996 1.02193 1.20091 0.97081 0.92982 0.99737 1.21286 0.94724 0.98127 1.01338 1.21399 0.94604 0.98906 1.00297 1.21415 1.00809 0.92815 1.00566 1.21303 0.93741 0.98873 0.99836 1.19889 0.93998 0.94945 1.00479 1.20947 1.02000 0.94075 0.94639 1.20948 0.85659 0.97780 0.91519 0.92122 1.22149 1.00512 0.97535 1.01478 1.45985 1.14870 1.69754 1.05783 1.21090 0.90134 0.75354 0.83079 1.90621 1.36648 1.48750 1.70726 1.21486 0.94867 1.04230 0.95156 1.19193 0.95207 0.95949 0.92758 1.21431 0.97102 1.45762 0.92363 0.93155 1.25775 0.98942 0.94902 0.98609 1.70021 1.29156 1.51254 1.07931 0.85855 0.80875 0.79134 0.78010 1.19513 1.20127 1.18694 0.92156 0.90584 0.89691 0.85202 0.85000 0.84895 0.84440 0.88286 0.87318 0.89572 0.94949 0.90680 0.75190 0.88494 0.88012 0.97236 0.97715 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.87 9.41 71.24 0.67 -1.20 16 2 C -0.10 -2.00 5.88 -19.87 -0.12 -2.12 16 3 C -0.14 -2.81 9.70 22.27 0.22 -2.59 16 4 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 5 C -0.14 -2.76 10.05 22.27 0.22 -2.53 16 6 C -0.12 -2.27 9.33 22.27 0.21 -2.06 16 7 C -0.09 -1.78 4.89 -19.87 -0.10 -1.87 16 8 C -0.08 -1.15 4.39 29.85 0.13 -1.02 16 9 C 0.15 3.10 2.56 44.99 0.12 3.22 16 10 H 0.06 1.67 7.37 -2.39 -0.02 1.65 16 11 C -0.16 -3.02 9.48 71.98 0.68 -2.34 16 12 N -0.71 -17.76 4.66 -442.53 -2.06 -19.82 16 13 C 0.52 18.67 7.79 87.66 0.68 19.35 16 14 O -0.59 -26.48 15.64 -3.00 -0.05 -26.53 16 15 C -0.12 -4.58 5.64 29.85 0.17 -4.41 16 16 C 0.01 0.35 3.33 29.85 0.10 0.45 16 17 C -0.53 -31.05 9.66 25.60 0.25 -30.80 16 18 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 19 C 0.02 0.93 5.47 84.65 0.46 1.39 16 20 N -0.94 -59.64 13.96 21.45 0.30 -59.34 16 21 Si 0.94 47.60 27.47 68.60 1.88 49.48 16 22 H -0.27 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.26 -13.32 6.54 99.48 0.65 -12.67 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 27 H 0.08 1.04 6.02 -2.38 -0.01 1.03 16 28 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.14 1.98 7.97 -2.91 -0.02 1.96 16 32 H 0.10 1.04 8.05 -2.38 -0.02 1.02 16 33 H 0.11 1.18 6.16 -2.39 -0.01 1.16 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.41 7.71 8.32 -92.71 -0.77 6.94 16 38 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 39 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 40 H 0.01 0.50 7.16 -2.39 -0.02 0.48 16 41 H 0.00 0.24 7.53 -2.39 -0.02 0.22 16 42 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -76.00 346.11 4.16 -71.84 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.17 Total: 13.40 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 3.92 Total: -29.03 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.76 Total: -79.17 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.05 Total: -26.53 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.88 Total: 49.48 kcal Total: -76.00 4.16 -71.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292801766.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.113 kcal (2) G-P(sol) polarization free energy of solvation -76.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds