Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 119.99465 * 2 1 4 4 C 1.38218 * 119.99943 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99593 * 0.02562 * 4 3 2 6 6 C 1.38205 * 120.00145 * 359.97438 * 5 4 3 7 7 C 1.38204 * 120.00446 * 179.72541 * 2 1 3 8 8 C 1.50700 * 119.99965 * 0.02562 * 7 2 1 9 9 C 1.53001 * 109.47509 * 60.04957 * 8 7 2 10 10 C 1.52999 * 109.47418 * 180.02562 * 8 7 2 11 11 N 1.46506 * 109.46878 * 300.04814 * 8 7 2 12 12 C 1.34777 * 119.99624 * 178.08551 * 11 8 7 13 13 O 1.21272 * 120.00383 * 359.97438 * 12 11 8 14 14 C 1.50708 * 119.99369 * 180.02562 * 12 11 8 15 15 C 1.52997 * 109.46872 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47339 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99369 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00224 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00147 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00273 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47346 * 89.99465 * 20 18 16 22 22 H 1.48494 * 109.47250 * 209.99658 * 20 18 16 23 23 H 1.48502 * 109.46754 * 329.99544 * 20 18 16 24 24 H 1.09006 * 109.46834 * 87.13495 * 1 2 3 25 25 H 1.08994 * 109.47451 * 327.13373 * 1 2 3 26 26 H 1.08993 * 109.46927 * 207.12822 * 1 2 3 27 27 H 1.08000 * 120.00590 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.00149 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.99643 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.00078 * 179.97438 * 6 5 4 31 31 H 1.08994 * 109.46950 * 51.96949 * 9 8 7 32 32 H 1.08992 * 109.47278 * 171.97946 * 9 8 7 33 33 H 1.09009 * 109.46615 * 291.97428 * 9 8 7 34 34 H 1.09002 * 109.47337 * 59.99572 * 10 8 7 35 35 H 1.08999 * 109.47325 * 179.97438 * 10 8 7 36 36 H 1.08999 * 109.46823 * 299.99583 * 10 8 7 37 37 H 0.96997 * 119.99928 * 358.08882 * 11 8 7 38 38 H 1.09000 * 109.47312 * 300.00091 * 14 12 11 39 39 H 1.08995 * 109.47215 * 60.00086 * 14 12 11 40 40 H 1.09000 * 109.47248 * 300.00156 * 15 14 12 41 41 H 1.09005 * 109.47041 * 60.00058 * 15 14 12 42 42 H 0.97003 * 120.00009 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1968 0.0005 7 6 2.1981 -1.1968 0.0057 8 6 1.4447 -2.5020 0.0114 9 6 0.5665 -2.5894 -1.2384 10 6 2.4390 -3.6648 0.0177 11 7 0.6011 -2.5736 1.2071 12 6 -0.1972 -3.6412 1.4055 13 8 -0.2176 -4.5423 0.5941 14 6 -1.0654 -3.7146 2.6351 15 6 -1.8666 -5.0179 2.6167 16 6 -2.7343 -5.0917 3.8466 17 1 -2.7164 -4.2890 4.5689 18 6 -3.5517 -6.1833 4.0492 19 7 -4.3086 -6.2479 5.1228 20 14 -3.5832 -7.5714 2.7994 21 1 -2.5585 -8.5844 3.1589 22 1 -4.9261 -8.2049 2.7971 23 1 -3.2897 -7.0281 1.4489 24 1 -0.3633 0.0514 -1.0265 25 1 -0.3634 0.8631 0.5576 26 1 -0.3633 -0.9146 0.4686 27 1 1.6582 2.1327 0.0004 28 1 4.1203 2.1328 0.0010 29 1 5.3517 0.0002 0.0005 30 1 4.1208 -2.1321 0.0001 31 1 1.1727 -2.3939 -2.1228 32 1 0.1325 -3.5868 -1.3084 33 1 -0.2316 -1.8496 -1.1741 34 1 3.0650 -3.6028 0.9079 35 1 1.8941 -4.6088 0.0223 36 1 3.0663 -3.6113 -0.8721 37 1 0.6172 -1.8527 1.8558 38 1 -0.4374 -3.6863 3.5256 39 1 -1.7509 -2.8673 2.6470 40 1 -2.4946 -5.0458 1.7263 41 1 -1.1813 -5.8655 2.6046 42 1 -4.8834 -7.0161 5.2655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293995548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = -20.157990 kcal Electronic energy + Delta-G solvation = -21429.122013 eV Core-core repulsion = 18373.774128 eV Total energy + Delta-G solvation = -3055.347885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74152 -38.94384 -35.97920 -33.47653 -33.00612 -32.16400 -31.04378 -29.67443 -27.72663 -26.64392 -26.07960 -23.57762 -21.64431 -21.39893 -19.88181 -19.40113 -17.48820 -16.75867 -15.96411 -15.89769 -15.35153 -14.95098 -14.69687 -14.18816 -14.09148 -13.69538 -13.46027 -13.30747 -13.18937 -12.55261 -12.49996 -12.45405 -12.17642 -12.00908 -11.91515 -11.66413 -11.40200 -11.33008 -11.02937 -10.91897 -10.68933 -10.13507 -10.00946 -9.76057 -9.17858 -9.14733 -8.99038 -8.80729 -8.73070 -8.49535 -6.01924 -4.00549 1.09055 1.18316 3.14139 3.34212 3.38616 3.45220 3.55856 3.73238 4.40008 4.51779 4.62635 4.74477 4.81566 5.03728 5.07904 5.12839 5.33631 5.34218 5.42323 5.49228 5.52761 5.66088 5.67859 5.75693 5.82793 5.85766 5.92984 6.05972 6.10293 6.11938 6.24810 6.26842 6.33389 6.39463 6.52431 6.71021 6.76904 6.79962 7.38070 7.45391 7.78748 7.85452 8.51750 8.70067 9.01474 9.61195 11.10961 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032803 B = 0.003840 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.384716 B = 7289.231951 C = 7592.748149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.129 4.129 6 C -0.105 4.105 7 C -0.090 4.090 8 C 0.217 3.783 9 C -0.168 4.168 10 C -0.164 4.164 11 N -0.731 5.731 12 C 0.513 3.487 13 O -0.534 6.534 14 C -0.123 4.123 15 C 0.003 3.997 16 C -0.525 4.525 17 H 0.072 0.928 18 C 0.068 3.932 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.261 1.261 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.398 0.602 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.019 0.981 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.234 15.313 -11.968 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.123 4.123 7 C -0.091 4.091 8 C 0.131 3.869 9 C -0.226 4.226 10 C -0.222 4.222 11 N -0.386 5.386 12 C 0.301 3.699 13 O -0.410 6.410 14 C -0.163 4.163 15 C -0.035 4.035 16 C -0.562 4.562 17 H 0.090 0.910 18 C -0.133 4.133 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.185 1.185 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.146 0.854 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.233 0.767 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.067 14.519 -12.466 24.987 hybrid contribution 0.088 -0.242 -0.195 0.323 sum 16.156 14.276 -12.661 25.002 Atomic orbital electron populations 1.21280 0.91081 1.04159 1.02779 1.19811 0.96262 0.92375 0.98329 1.21041 0.94252 0.97455 1.01383 1.21155 0.94336 0.98038 0.99888 1.21126 0.99818 0.92475 1.01286 1.21221 0.93526 0.98547 0.98990 1.19830 0.93669 0.93788 1.01770 1.18986 0.89930 0.91422 0.86529 1.22431 0.99854 1.04727 0.95580 1.22289 0.98777 0.99756 1.01371 1.46518 1.44397 1.23452 1.24242 1.21481 0.79293 0.80611 0.88470 1.90589 1.66350 1.37817 1.46252 1.21686 0.97853 1.03130 0.93670 1.19352 0.94974 0.91412 0.97753 1.21124 1.22887 1.06405 1.05829 0.90991 1.24976 0.94910 0.98157 0.95230 1.69917 1.26779 1.30610 1.27007 0.86789 0.77101 0.82498 0.83115 1.20282 1.21496 1.18511 0.90929 0.91592 0.89404 0.86060 0.86214 0.86129 0.85356 0.92467 0.89778 0.91497 0.92451 0.89893 0.92006 0.76657 0.89739 0.89719 0.95822 0.96305 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 7.98 36.01 0.29 -1.02 16 2 C -0.07 -0.69 5.60 -104.63 -0.59 -1.27 16 3 C -0.12 -1.12 9.71 -39.58 -0.38 -1.50 16 4 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 5 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 6 C -0.10 -1.04 8.98 -39.59 -0.36 -1.39 16 7 C -0.09 -0.98 4.79 -104.63 -0.50 -1.48 16 8 C 0.22 2.69 0.63 -132.97 -0.08 2.61 16 9 C -0.17 -2.17 7.79 37.16 0.29 -1.88 16 10 C -0.16 -2.05 7.08 37.16 0.26 -1.79 16 11 N -0.73 -9.83 3.30 -48.68 -0.16 -9.99 16 12 C 0.51 8.98 7.25 -10.98 -0.08 8.90 16 13 O -0.53 -11.05 12.30 5.56 0.07 -10.98 16 14 C -0.12 -2.36 5.64 -27.88 -0.16 -2.52 16 15 C 0.00 0.07 3.33 -27.88 -0.09 -0.02 16 16 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 20 Si 0.88 22.59 27.47 -169.99 -4.67 17.92 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 24 H 0.07 0.67 7.40 -51.93 -0.38 0.28 16 25 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 26 H 0.09 0.95 4.26 -51.93 -0.22 0.73 16 27 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 28 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 29 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 30 H 0.13 1.15 5.90 -52.49 -0.31 0.84 16 31 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.08 1.30 6.30 -51.93 -0.33 0.98 16 33 H 0.07 0.82 4.87 -51.92 -0.25 0.57 16 34 H 0.06 0.68 7.53 -51.93 -0.39 0.29 16 35 H 0.08 1.27 6.31 -51.93 -0.33 0.95 16 36 H 0.06 0.65 7.50 -51.93 -0.39 0.27 16 37 H 0.40 4.61 7.60 -40.82 -0.31 4.30 16 38 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 41 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -32.75 327.12 -7.90 -40.65 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.22 Total: 2.47 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.63 Total: -17.69 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.61 Total: -37.31 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.75 -7.90 -40.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293995548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.492 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds