Wall clock time and date at job start Mon Mar 30 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38258 * 119.99465 * 2 1 4 4 C 1.38218 * 119.99943 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99593 * 0.02562 * 4 3 2 6 6 C 1.38205 * 120.00145 * 359.97438 * 5 4 3 7 7 C 1.38204 * 120.00446 * 179.72541 * 2 1 3 8 8 C 1.50700 * 119.99965 * 0.02562 * 7 2 1 9 9 C 1.53001 * 109.47509 * 60.04957 * 8 7 2 10 10 C 1.52999 * 109.47418 * 180.02562 * 8 7 2 11 11 N 1.46506 * 109.46878 * 300.04814 * 8 7 2 12 12 C 1.34777 * 119.99624 * 178.08551 * 11 8 7 13 13 O 1.21272 * 120.00383 * 359.97438 * 12 11 8 14 14 C 1.50708 * 119.99369 * 180.02562 * 12 11 8 15 15 C 1.52997 * 109.46872 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.47339 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99369 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00224 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00147 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00273 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47346 * 89.99465 * 20 18 16 22 22 H 1.48494 * 109.47250 * 209.99658 * 20 18 16 23 23 H 1.48502 * 109.46754 * 329.99544 * 20 18 16 24 24 H 1.09006 * 109.46834 * 87.13495 * 1 2 3 25 25 H 1.08994 * 109.47451 * 327.13373 * 1 2 3 26 26 H 1.08993 * 109.46927 * 207.12822 * 1 2 3 27 27 H 1.08000 * 120.00590 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.00149 * 180.02562 * 4 3 2 29 29 H 1.08000 * 119.99643 * 179.97438 * 5 4 3 30 30 H 1.07999 * 120.00078 * 179.97438 * 6 5 4 31 31 H 1.08994 * 109.46950 * 51.96949 * 9 8 7 32 32 H 1.08992 * 109.47278 * 171.97946 * 9 8 7 33 33 H 1.09009 * 109.46615 * 291.97428 * 9 8 7 34 34 H 1.09002 * 109.47337 * 59.99572 * 10 8 7 35 35 H 1.08999 * 109.47325 * 179.97438 * 10 8 7 36 36 H 1.08999 * 109.46823 * 299.99583 * 10 8 7 37 37 H 0.96997 * 119.99928 * 358.08882 * 11 8 7 38 38 H 1.09000 * 109.47312 * 300.00091 * 14 12 11 39 39 H 1.08995 * 109.47215 * 60.00086 * 14 12 11 40 40 H 1.09000 * 109.47248 * 300.00156 * 15 14 12 41 41 H 1.09005 * 109.47041 * 60.00058 * 15 14 12 42 42 H 0.97003 * 120.00009 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1968 0.0005 7 6 2.1981 -1.1968 0.0057 8 6 1.4447 -2.5020 0.0114 9 6 0.5665 -2.5894 -1.2384 10 6 2.4390 -3.6648 0.0177 11 7 0.6011 -2.5736 1.2071 12 6 -0.1972 -3.6412 1.4055 13 8 -0.2176 -4.5423 0.5941 14 6 -1.0654 -3.7146 2.6351 15 6 -1.8666 -5.0179 2.6167 16 6 -2.7343 -5.0917 3.8466 17 1 -2.7164 -4.2890 4.5689 18 6 -3.5517 -6.1833 4.0492 19 7 -4.3086 -6.2479 5.1228 20 14 -3.5832 -7.5714 2.7994 21 1 -2.5585 -8.5844 3.1589 22 1 -4.9261 -8.2049 2.7971 23 1 -3.2897 -7.0281 1.4489 24 1 -0.3633 0.0514 -1.0265 25 1 -0.3634 0.8631 0.5576 26 1 -0.3633 -0.9146 0.4686 27 1 1.6582 2.1327 0.0004 28 1 4.1203 2.1328 0.0010 29 1 5.3517 0.0002 0.0005 30 1 4.1208 -2.1321 0.0001 31 1 1.1727 -2.3939 -2.1228 32 1 0.1325 -3.5868 -1.3084 33 1 -0.2316 -1.8496 -1.1741 34 1 3.0650 -3.6028 0.9079 35 1 1.8941 -4.6088 0.0223 36 1 3.0663 -3.6113 -0.8721 37 1 0.6172 -1.8527 1.8558 38 1 -0.4374 -3.6863 3.5256 39 1 -1.7509 -2.8673 2.6470 40 1 -2.4946 -5.0458 1.7263 41 1 -1.1813 -5.8655 2.6046 42 1 -4.8834 -7.0161 5.2655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293995548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:15 Heat of formation + Delta-G solvation = -39.204521 kcal Electronic energy + Delta-G solvation = -21429.947932 eV Core-core repulsion = 18373.774128 eV Total energy + Delta-G solvation = -3056.173804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.74347 -40.04626 -37.06623 -35.49662 -33.80751 -33.58595 -32.69899 -30.55628 -28.59990 -27.96284 -27.47493 -24.62038 -23.13012 -22.24488 -21.18813 -20.60322 -19.23328 -18.08566 -17.26678 -16.79268 -16.51900 -16.24299 -16.04383 -15.50550 -15.02460 -14.97184 -14.69072 -14.56110 -14.50113 -13.88837 -13.86334 -13.41504 -13.34639 -13.02491 -12.93344 -12.85763 -12.83898 -12.60539 -12.17439 -12.05294 -11.95161 -11.80791 -11.75030 -11.57868 -11.38103 -10.77489 -10.48271 -10.01918 -9.70974 -9.50327 -8.30930 -6.33745 0.36619 0.49869 1.33791 1.35618 1.50722 1.74552 2.27415 2.35514 2.91435 3.04932 3.51683 3.86985 3.99515 4.04630 4.13487 4.16211 4.29054 4.40499 4.47421 4.50908 4.62070 4.70294 4.72790 4.77113 4.80096 4.89263 4.90158 4.98922 5.03076 5.12412 5.26774 5.27747 5.36541 5.38755 5.46973 5.54519 5.61777 5.63854 5.65740 5.78211 6.12278 6.24558 6.64498 6.72891 7.31613 7.36903 8.84863 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032803 B = 0.003840 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.384716 B = 7289.231951 C = 7592.748149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.132 4.132 6 C -0.113 4.113 7 C -0.103 4.103 8 C 0.217 3.783 9 C -0.164 4.164 10 C -0.160 4.160 11 N -0.711 5.711 12 C 0.518 3.482 13 O -0.569 6.569 14 C -0.119 4.119 15 C 0.008 3.992 16 C -0.529 4.529 17 H 0.048 0.952 18 C 0.013 3.987 19 N -0.945 5.945 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.260 1.260 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.135 0.865 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.410 0.590 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.011 0.989 41 H 0.008 0.992 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.020 16.916 -13.073 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.077 4.077 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.150 4.150 6 C -0.131 4.131 7 C -0.104 4.104 8 C 0.132 3.868 9 C -0.222 4.222 10 C -0.218 4.218 11 N -0.365 5.365 12 C 0.307 3.693 13 O -0.448 6.448 14 C -0.159 4.159 15 C -0.030 4.030 16 C -0.567 4.567 17 H 0.066 0.934 18 C -0.185 4.185 19 N -0.585 5.585 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.184 1.184 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.156 0.844 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.152 0.848 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.247 0.753 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.878 16.165 -13.565 27.657 hybrid contribution -0.411 -0.609 0.176 0.756 sum 17.467 15.555 -13.388 26.950 Atomic orbital electron populations 1.21243 0.91036 1.03899 1.02969 1.19911 0.96433 0.92649 0.98684 1.21297 0.94805 0.97683 1.00906 1.21507 0.94298 0.99036 0.98493 1.21423 1.01034 0.92085 1.00453 1.21375 0.93182 0.99525 0.99062 1.19672 0.94058 0.92897 1.03757 1.19039 0.89647 0.92649 0.85437 1.22374 1.00268 1.02993 0.96566 1.22240 0.98735 0.98159 1.02675 1.46299 1.43125 1.22277 1.24804 1.21044 0.79616 0.81181 0.87490 1.90594 1.67635 1.39363 1.47187 1.21512 0.98238 1.00757 0.95354 1.19191 0.94567 0.94051 0.95184 1.21448 1.23148 1.05537 1.06555 0.93358 1.25814 0.94769 1.00840 0.97055 1.70031 1.27897 1.31745 1.28865 0.85808 0.77641 0.79575 0.80556 1.19451 1.20438 1.18420 0.90739 0.90256 0.90978 0.84359 0.83830 0.84002 0.84757 0.91071 0.92723 0.91059 0.91798 0.92981 0.90088 0.75327 0.88474 0.88240 0.97026 0.97310 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.98 71.24 0.57 -1.77 16 2 C -0.08 -1.38 5.60 -19.87 -0.11 -1.50 16 3 C -0.13 -1.95 9.71 22.27 0.22 -1.74 16 4 C -0.12 -1.56 10.05 22.27 0.22 -1.33 16 5 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 6 C -0.11 -1.97 8.98 22.27 0.20 -1.77 16 7 C -0.10 -2.05 4.79 -19.87 -0.10 -2.15 16 8 C 0.22 5.17 0.63 2.86 0.00 5.17 16 9 C -0.16 -4.15 7.79 71.98 0.56 -3.59 16 10 C -0.16 -3.89 7.08 71.98 0.51 -3.38 16 11 N -0.71 -18.47 3.30 -426.31 -1.41 -19.88 16 12 C 0.52 18.04 7.25 87.66 0.64 18.67 16 13 O -0.57 -23.83 12.30 -3.01 -0.04 -23.87 16 14 C -0.12 -4.51 5.64 29.85 0.17 -4.34 16 15 C 0.01 0.40 3.33 29.85 0.10 0.50 16 16 C -0.53 -30.70 9.66 25.60 0.25 -30.45 16 17 H 0.05 2.96 7.99 -2.91 -0.02 2.93 16 18 C 0.01 0.76 5.47 84.65 0.46 1.22 16 19 N -0.94 -59.52 13.96 21.45 0.30 -59.23 16 20 Si 0.94 47.00 27.47 68.60 1.88 48.89 16 21 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.26 -12.87 6.54 99.48 0.65 -12.22 16 24 H 0.07 1.25 7.40 -2.38 -0.02 1.23 16 25 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 26 H 0.07 1.47 4.26 -2.39 -0.01 1.46 16 27 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 28 H 0.14 1.22 8.06 -2.91 -0.02 1.19 16 29 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 30 H 0.13 2.09 5.90 -2.91 -0.02 2.07 16 31 H 0.07 1.56 8.13 -2.39 -0.02 1.54 16 32 H 0.05 1.72 6.30 -2.39 -0.02 1.71 16 33 H 0.07 1.70 4.87 -2.38 -0.01 1.69 16 34 H 0.06 1.43 7.53 -2.39 -0.02 1.41 16 35 H 0.05 1.61 6.31 -2.39 -0.02 1.60 16 36 H 0.08 1.61 7.50 -2.39 -0.02 1.59 16 37 H 0.41 8.87 7.60 -92.71 -0.70 8.17 16 38 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.01 0.59 7.16 -2.39 -0.02 0.58 16 41 H 0.01 0.44 7.53 -2.38 -0.02 0.42 16 42 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -71.01 327.12 4.91 -66.10 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.26 Total: 16.10 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 3.91 Total: -28.11 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -1.11 Total: -79.11 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.04 Total: -23.87 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.88 Total: 48.89 kcal Total: -71.01 4.91 -66.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293995548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.893 kcal (2) G-P(sol) polarization free energy of solvation -71.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds