Wall clock time and date at job start Mon Mar 30 2020 02:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 N 1.46499 * 109.47525 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00178 * 89.99618 * 10 9 8 12 12 C 1.34775 * 119.99767 * 270.00430 * 10 9 8 13 13 O 1.21286 * 120.00084 * 359.97438 * 12 10 9 14 14 C 1.50701 * 119.99766 * 179.97438 * 12 10 9 15 15 C 1.53005 * 109.47281 * 179.97438 * 14 12 10 16 16 C 1.50701 * 109.47281 * 179.97438 * 15 14 12 17 17 H 1.07991 * 119.99738 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99928 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99754 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99968 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47335 * 59.99631 * 20 18 16 22 22 H 1.48504 * 109.47228 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47068 * 299.99455 * 20 18 16 24 24 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 25 25 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 26 26 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 27 27 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 28 28 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 31 31 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 32 32 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 33 33 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 34 34 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 35 35 H 1.08995 * 109.46788 * 90.00230 * 11 10 9 36 36 H 1.08990 * 109.47061 * 210.00598 * 11 10 9 37 37 H 1.09006 * 109.46864 * 330.00325 * 11 10 9 38 38 H 1.08992 * 109.47257 * 299.99237 * 14 12 10 39 39 H 1.09001 * 109.47185 * 59.99943 * 14 12 10 40 40 H 1.09006 * 109.46902 * 300.00163 * 15 14 12 41 41 H 1.08999 * 109.47091 * 59.99470 * 15 14 12 42 42 H 0.97004 * 119.99760 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 7 0.3498 -4.1505 -1.4366 11 6 -1.1110 -4.1536 -1.3268 12 6 1.0205 -5.3152 -1.5375 13 8 2.2299 -5.3126 -1.6287 14 6 0.2676 -6.6207 -1.5370 15 6 1.2577 -7.7804 -1.6625 16 6 0.5049 -9.0860 -1.6614 17 1 -0.5719 -9.0882 -1.5790 18 6 1.1909 -10.2774 -1.7645 19 7 2.5023 -10.2746 -1.8644 20 14 0.2578 -11.8956 -1.7638 21 1 -0.6849 -11.9239 -2.9109 22 1 1.2187 -13.0213 -1.8855 23 1 -0.5024 -12.0281 -0.4951 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6582 2.1327 -0.0004 28 1 4.1203 2.1329 0.0001 29 1 5.3517 0.0002 0.0005 30 1 4.1207 -2.1321 0.0064 31 1 2.0693 -3.2822 0.4356 32 1 0.5336 -2.3956 0.5893 33 1 0.4571 -2.1013 -1.8716 34 1 1.9929 -2.9879 -2.0253 35 1 -1.5503 -4.1099 -2.3234 36 1 -1.4358 -5.0656 -0.8262 37 1 -1.4338 -3.2874 -0.7492 38 1 -0.2902 -6.7180 -0.6058 39 1 -0.4243 -6.6414 -2.3790 40 1 1.8153 -7.6829 -2.5940 41 1 1.9500 -7.7599 -0.8208 42 1 2.9850 -11.1128 -1.9373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295512704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:26 Heat of formation + Delta-G solvation = -32.800707 kcal Electronic energy + Delta-G solvation = -20593.295433 eV Core-core repulsion = 17537.399319 eV Total energy + Delta-G solvation = -3055.896114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.93745 -39.15533 -35.65340 -33.67706 -33.36626 -32.42739 -30.97692 -29.03016 -27.10923 -26.48042 -25.67153 -23.59763 -22.08294 -21.20620 -20.54686 -18.50242 -16.97295 -16.58282 -15.95119 -15.85394 -15.44733 -15.29877 -14.85735 -14.41345 -13.97294 -13.45438 -13.38137 -13.26645 -13.08810 -12.80531 -12.50257 -12.34191 -12.22328 -12.15267 -12.13588 -11.81083 -11.29721 -11.09962 -11.00111 -10.89997 -10.77813 -10.59025 -9.92822 -9.60820 -9.16327 -9.01420 -8.92580 -8.77753 -8.33646 -8.28008 -5.94609 -3.99080 1.21685 1.27761 3.23535 3.31423 3.35113 3.39953 3.41827 3.65120 4.48024 4.65069 4.70121 4.84520 4.85357 5.01162 5.11254 5.21410 5.25412 5.31079 5.40111 5.41144 5.45537 5.47389 5.57532 5.59293 5.67895 5.77815 5.85148 5.94311 6.05456 6.17240 6.24226 6.26636 6.36330 6.41159 6.58365 6.77468 6.90487 6.92514 7.74490 7.76123 7.88240 8.08933 8.40134 8.76643 9.09317 9.64267 11.16334 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035057 B = 0.003098 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.512774 B = 9035.949657 C = 9668.612627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.108 4.108 7 C -0.076 4.076 8 C -0.098 4.098 9 C 0.123 3.877 10 N -0.631 5.631 11 C 0.081 3.919 12 C 0.510 3.490 13 O -0.531 6.531 14 C -0.128 4.128 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.138 23.468 3.962 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.142 4.142 5 C -0.142 4.142 6 C -0.126 4.126 7 C -0.077 4.077 8 C -0.136 4.136 9 C 0.000 4.000 10 N -0.367 5.367 11 C -0.062 4.062 12 C 0.300 3.700 13 O -0.407 6.407 14 C -0.168 4.168 15 C 0.000 4.000 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.330 23.320 3.879 24.034 hybrid contribution -0.462 -0.796 0.045 0.922 sum -4.792 22.524 3.924 23.360 Atomic orbital electron populations 1.20868 0.91396 1.02848 1.02344 1.19780 0.95958 0.92609 1.00183 1.20980 0.94276 0.97270 1.01514 1.21098 0.94320 0.97951 1.00828 1.21146 0.99895 0.92498 1.00675 1.21191 0.93754 0.98480 0.99198 1.19707 0.93718 0.94278 0.99957 1.20998 1.00166 0.94100 0.98368 1.21310 0.97828 0.85142 0.95756 1.48099 1.07126 1.06100 1.75360 1.21740 0.80003 1.03035 1.01440 1.21610 0.88407 0.85579 0.74399 1.90659 1.14593 1.87184 1.48214 1.21885 1.00696 0.91970 1.02238 1.18901 0.93227 0.89430 0.98483 1.21185 0.93208 0.91154 1.51022 0.92684 1.25026 0.94830 0.99199 0.95325 1.69993 1.06341 1.26785 1.49727 0.86654 0.79552 0.83208 0.78518 1.20254 1.21288 1.20257 0.91211 0.91654 0.91135 0.86328 0.86344 0.86157 0.85674 0.90309 0.90842 0.91056 0.89911 0.92874 0.90446 0.91804 0.90293 0.90322 0.95874 0.95882 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.22 36.00 0.33 -0.59 16 2 C -0.09 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 5 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 6 C -0.11 -1.30 9.68 -39.58 -0.38 -1.68 16 7 C -0.08 -0.89 5.13 -104.63 -0.54 -1.43 16 8 C -0.10 -1.20 4.97 -27.88 -0.14 -1.34 16 9 C 0.12 1.61 5.20 -4.04 -0.02 1.59 16 10 N -0.63 -9.29 2.87 -181.58 -0.52 -9.81 16 11 C 0.08 0.86 10.24 59.85 0.61 1.48 16 12 C 0.51 10.06 7.67 -10.99 -0.08 9.98 16 13 O -0.53 -12.67 15.56 5.55 0.09 -12.58 16 14 C -0.13 -2.64 4.19 -27.88 -0.12 -2.76 16 15 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 16 C -0.53 -15.05 9.11 -34.44 -0.31 -15.37 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.62 13.29 55.43 0.74 -26.89 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 26 H 0.07 0.54 5.43 -51.93 -0.28 0.26 16 27 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 29 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 32 H 0.07 0.79 6.99 -51.93 -0.36 0.43 16 33 H 0.07 0.76 6.84 -51.93 -0.36 0.41 16 34 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.83 6.44 -51.93 -0.33 0.49 16 37 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 38 H 0.08 1.48 7.40 -51.93 -0.38 1.10 16 39 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 347.00 15.07 5.23 5.23 Total: -1.00 -34.17 347.00 -8.85 -43.02 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.70 Total: -1.79 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.66 Total: -13.91 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.21 Total: -36.70 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.17 -8.85 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295512704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.220 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds