Wall clock time and date at job start Mon Mar 30 2020 02:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38262 * 120.00038 * 2 1 4 4 C 1.38205 * 120.00475 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99884 * 0.02562 * 4 3 2 6 6 C 1.38220 * 120.00046 * 359.94758 * 5 4 3 7 7 C 1.38208 * 120.00408 * 179.97438 * 2 1 3 8 8 C 1.50701 * 119.99804 * 0.02562 * 7 2 1 9 9 C 1.52999 * 109.47402 * 85.02067 * 8 7 2 10 10 N 1.46499 * 109.47525 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00178 * 89.99618 * 10 9 8 12 12 C 1.34775 * 119.99767 * 270.00430 * 10 9 8 13 13 O 1.21286 * 120.00084 * 359.97438 * 12 10 9 14 14 C 1.50701 * 119.99766 * 179.97438 * 12 10 9 15 15 C 1.53005 * 109.47281 * 179.97438 * 14 12 10 16 16 C 1.50701 * 109.47281 * 179.97438 * 15 14 12 17 17 H 1.07991 * 119.99738 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99928 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99754 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99968 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47335 * 59.99631 * 20 18 16 22 22 H 1.48504 * 109.47228 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47068 * 299.99455 * 20 18 16 24 24 H 1.08997 * 109.47001 * 270.01980 * 1 2 3 25 25 H 1.08997 * 109.47350 * 30.02356 * 1 2 3 26 26 H 1.08998 * 109.46705 * 150.02574 * 1 2 3 27 27 H 1.08000 * 119.99741 * 359.97438 * 3 2 1 28 28 H 1.08005 * 120.00151 * 179.97438 * 4 3 2 29 29 H 1.08002 * 120.00347 * 179.97438 * 5 4 3 30 30 H 1.08000 * 119.99660 * 180.32192 * 6 5 4 31 31 H 1.09003 * 109.47025 * 205.01748 * 8 7 2 32 32 H 1.08991 * 109.47184 * 325.01693 * 8 7 2 33 33 H 1.08997 * 109.46738 * 300.00295 * 9 8 7 34 34 H 1.08999 * 109.46965 * 59.99689 * 9 8 7 35 35 H 1.08995 * 109.46788 * 90.00230 * 11 10 9 36 36 H 1.08990 * 109.47061 * 210.00598 * 11 10 9 37 37 H 1.09006 * 109.46864 * 330.00325 * 11 10 9 38 38 H 1.08992 * 109.47257 * 299.99237 * 14 12 10 39 39 H 1.09001 * 109.47185 * 59.99943 * 14 12 10 40 40 H 1.09006 * 109.46902 * 300.00163 * 15 14 12 41 41 H 1.08999 * 109.47091 * 59.99470 * 15 14 12 42 42 H 0.97004 * 119.99760 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 0.0005 6 6 3.5806 -1.1969 0.0011 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0817 -2.8815 -1.4365 10 7 0.3498 -4.1505 -1.4366 11 6 -1.1110 -4.1536 -1.3268 12 6 1.0205 -5.3152 -1.5375 13 8 2.2299 -5.3126 -1.6287 14 6 0.2676 -6.6207 -1.5370 15 6 1.2577 -7.7804 -1.6625 16 6 0.5049 -9.0860 -1.6614 17 1 -0.5719 -9.0882 -1.5790 18 6 1.1909 -10.2774 -1.7645 19 7 2.5023 -10.2746 -1.8644 20 14 0.2578 -11.8956 -1.7638 21 1 -0.6849 -11.9239 -2.9109 22 1 1.2187 -13.0213 -1.8855 23 1 -0.5024 -12.0281 -0.4951 24 1 -0.3633 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6582 2.1327 -0.0004 28 1 4.1203 2.1329 0.0001 29 1 5.3517 0.0002 0.0005 30 1 4.1207 -2.1321 0.0064 31 1 2.0693 -3.2822 0.4356 32 1 0.5336 -2.3956 0.5893 33 1 0.4571 -2.1013 -1.8716 34 1 1.9929 -2.9879 -2.0253 35 1 -1.5503 -4.1099 -2.3234 36 1 -1.4358 -5.0656 -0.8262 37 1 -1.4338 -3.2874 -0.7492 38 1 -0.2902 -6.7180 -0.6058 39 1 -0.4243 -6.6414 -2.3790 40 1 1.8153 -7.6829 -2.5940 41 1 1.9500 -7.7599 -0.8208 42 1 2.9850 -11.1128 -1.9373 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295512704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:26 Heat of formation + Delta-G solvation = -52.628654 kcal Electronic energy + Delta-G solvation = -20594.155237 eV Core-core repulsion = 17537.399319 eV Total energy + Delta-G solvation = -3056.755918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07437 -40.30225 -36.96306 -35.60194 -34.51813 -33.32008 -32.80876 -30.08067 -28.01127 -27.74015 -27.14373 -24.97650 -23.14185 -22.72932 -21.42519 -19.96477 -18.79911 -17.67560 -17.39882 -16.97752 -16.69275 -16.48327 -16.42730 -15.75417 -14.97778 -14.76303 -14.44587 -14.30238 -14.14382 -14.02872 -13.76979 -13.67262 -13.37689 -13.31467 -13.00441 -12.96609 -12.79057 -12.68954 -12.50925 -12.17988 -11.91286 -11.79690 -11.70622 -11.57093 -11.32488 -10.66781 -10.56297 -9.89518 -9.63655 -9.35484 -8.18037 -6.32640 0.41617 0.47199 1.41769 1.46726 1.54408 1.69470 2.08880 2.43452 2.83708 3.14676 3.72267 3.87512 3.92748 4.08045 4.12129 4.20796 4.26856 4.37107 4.41642 4.47095 4.50906 4.53634 4.60157 4.77220 4.80002 4.87199 4.91348 4.97973 5.00935 5.02004 5.11693 5.19722 5.38661 5.47792 5.58877 5.61027 5.61889 5.66140 5.76051 5.84666 6.14259 6.16976 6.40077 6.85814 7.27547 7.37844 8.94626 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035057 B = 0.003098 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.512774 B = 9035.949657 C = 9668.612627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.087 4.087 3 C -0.125 4.125 4 C -0.124 4.124 5 C -0.136 4.136 6 C -0.135 4.135 7 C -0.094 4.094 8 C -0.086 4.086 9 C 0.125 3.875 10 N -0.617 5.617 11 C 0.069 3.931 12 C 0.505 3.495 13 O -0.590 6.590 14 C -0.115 4.115 15 C 0.043 3.957 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.261 1.261 22 H -0.288 1.288 23 H -0.261 1.261 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.102 0.898 40 H -0.021 1.021 41 H -0.021 1.021 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 25.269 4.273 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.142 4.142 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.095 4.095 8 C -0.124 4.124 9 C 0.002 3.998 10 N -0.350 5.350 11 C -0.072 4.072 12 C 0.295 3.705 13 O -0.470 6.470 14 C -0.154 4.154 15 C 0.005 3.995 16 C -0.581 4.581 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.214 1.214 23 H -0.186 1.186 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.165 0.835 28 H 0.162 0.838 29 H 0.149 0.851 30 H 0.122 0.878 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.121 0.879 40 H -0.002 1.002 41 H -0.002 1.002 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.075 25.172 4.199 26.767 hybrid contribution 0.705 -1.231 -0.046 1.419 sum -7.370 23.940 4.154 25.391 Atomic orbital electron populations 1.20934 0.89289 1.03898 1.03279 1.20089 0.97532 0.91985 0.99132 1.21375 0.94406 0.98149 1.00313 1.21455 0.94850 0.98357 0.99536 1.21347 1.00700 0.92472 1.00831 1.21237 0.94527 0.98518 1.01067 1.19717 0.93523 0.94722 1.01511 1.20836 1.00427 0.93539 0.97613 1.21412 0.97139 0.85007 0.96226 1.48061 1.09079 1.04974 1.72933 1.22134 0.76710 1.04988 1.03369 1.21462 0.87638 0.86935 0.74464 1.90642 1.16982 1.88072 1.51305 1.21638 0.99245 0.90094 1.04455 1.18685 0.93709 0.92646 0.94419 1.21687 0.94356 0.91638 1.50452 0.90451 1.26175 0.95729 1.04059 0.94596 1.70187 1.08689 1.28000 1.51028 0.85351 0.78044 0.77177 0.79537 1.18578 1.21395 1.18566 0.90235 0.89829 0.90853 0.83510 0.83775 0.85066 0.87784 0.93932 0.88658 0.87406 0.93253 0.91016 0.90170 0.88160 0.87801 0.87943 1.00238 1.00225 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 9.22 71.23 0.66 -0.73 16 2 C -0.09 -1.59 5.88 -19.87 -0.12 -1.70 16 3 C -0.12 -2.01 9.70 22.27 0.22 -1.79 16 4 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 5 C -0.14 -2.86 10.05 22.27 0.22 -2.64 16 6 C -0.14 -3.48 9.68 22.27 0.22 -3.26 16 7 C -0.09 -2.21 5.13 -19.87 -0.10 -2.31 16 8 C -0.09 -2.11 4.97 29.85 0.15 -1.97 16 9 C 0.12 3.23 5.20 86.38 0.45 3.68 16 10 N -0.62 -17.58 2.87 -846.78 -2.43 -20.02 16 11 C 0.07 1.22 10.24 127.77 1.31 2.53 16 12 C 0.50 20.55 7.67 87.66 0.67 21.22 16 13 O -0.59 -30.40 15.56 -3.05 -0.05 -30.45 16 14 C -0.11 -4.75 4.19 29.85 0.13 -4.62 16 15 C 0.04 2.46 4.26 29.85 0.13 2.59 16 16 C -0.54 -31.37 9.11 25.60 0.23 -31.13 16 17 H 0.08 4.02 7.74 -2.92 -0.02 4.00 16 18 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 19 N -0.94 -60.60 13.29 21.45 0.28 -60.32 16 20 Si 0.98 44.63 29.54 68.60 2.03 46.65 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 26 H 0.07 0.81 5.43 -2.39 -0.01 0.80 16 27 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 28 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 29 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.10 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.04 1.34 8.05 -2.39 -0.02 1.32 16 32 H 0.10 1.88 6.99 -2.39 -0.02 1.86 16 33 H 0.11 2.02 6.84 -2.39 -0.02 2.00 16 34 H 0.05 1.63 7.42 -2.39 -0.02 1.61 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.42 6.44 -2.39 -0.02 1.40 16 37 H 0.10 1.10 8.07 -2.38 -0.02 1.08 16 38 H 0.10 3.76 7.40 -2.39 -0.02 3.74 16 39 H 0.10 3.73 8.11 -2.39 -0.02 3.71 16 40 H -0.02 -1.35 8.10 -2.38 -0.02 -1.37 16 41 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 42 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -80.47 347.00 5.66 -74.81 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 0.98 Total: 11.38 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 4.84 Total: -22.06 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -2.15 Total: -80.33 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -0.05 Total: -30.45 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -80.47 5.66 -74.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295512704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.182 kcal (2) G-P(sol) polarization free energy of solvation -80.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds