Wall clock time and date at job start Mon Mar 30 2020 02:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00213 * 2 1 4 4 C 1.38221 * 120.00104 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.99827 * 0.02562 * 4 3 2 6 6 C 1.38211 * 119.99862 * 359.95551 * 5 4 3 7 7 C 1.50702 * 119.99784 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47170 * 4.80817 * 7 6 5 9 9 C 1.46507 * 119.99797 * 273.87130 * 8 7 6 10 10 C 1.34779 * 120.00338 * 94.14634 * 8 7 6 11 11 O 1.21283 * 119.99681 * 359.72595 * 10 8 7 12 12 C 1.50697 * 119.99998 * 179.72511 * 10 8 7 13 13 C 1.53007 * 109.46827 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.46827 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00493 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99464 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00497 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99519 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47214 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46976 * 119.99791 * 18 16 14 21 21 H 1.48496 * 109.46945 * 239.99470 * 18 16 14 22 22 C 1.38213 * 119.99740 * 180.20642 * 2 1 3 23 23 C 1.50703 * 120.00133 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.46729 * 89.99662 * 1 2 3 25 25 H 1.08996 * 109.47101 * 209.99862 * 1 2 3 26 26 H 1.08999 * 109.46864 * 329.99977 * 1 2 3 27 27 H 1.07998 * 120.00009 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.00327 * 179.97438 * 4 3 2 29 29 H 1.07997 * 119.99572 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.46957 * 244.80397 * 7 6 5 31 31 H 1.09004 * 109.46668 * 124.80619 * 7 6 5 32 32 H 1.08998 * 109.46788 * 264.84825 * 9 8 7 33 33 H 1.08997 * 109.46700 * 24.85058 * 9 8 7 34 34 H 1.08998 * 109.46875 * 144.84745 * 9 8 7 35 35 H 1.08994 * 109.47127 * 299.99975 * 12 10 8 36 36 H 1.08998 * 109.47249 * 60.00102 * 12 10 8 37 37 H 1.09000 * 109.47296 * 300.00434 * 13 12 10 38 38 H 1.08998 * 109.47030 * 60.00082 * 13 12 10 39 39 H 0.96993 * 120.00391 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47001 * 265.52259 * 23 22 2 41 41 H 1.09001 * 109.47062 * 25.52573 * 23 22 2 42 42 H 1.09002 * 109.47107 * 145.52360 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2718 -0.0002 -0.0016 6 6 3.5806 -1.1971 -0.0012 7 6 4.3341 -2.5022 -0.0018 8 7 5.7703 -2.2370 0.1130 9 6 6.5637 -1.9671 -1.0887 10 6 6.3628 -2.2468 1.3236 11 8 5.7060 -2.4703 2.3183 12 6 7.8413 -1.9801 1.4410 13 6 8.2566 -2.0487 2.9120 14 6 9.7353 -1.7827 3.0293 15 1 10.3204 -1.5849 2.1434 16 6 10.3413 -1.7928 4.2678 17 7 9.6290 -2.0341 5.3466 18 14 12.1744 -1.4637 4.4132 19 1 12.7427 -1.2228 3.0626 20 1 12.3965 -0.2675 5.2647 21 1 12.8412 -2.6396 5.0278 22 6 2.1980 -1.1970 -0.0043 23 6 1.4445 -2.5021 -0.0096 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6584 2.1326 -0.0004 28 1 4.1206 2.1325 -0.0010 29 1 5.3518 -0.0002 -0.0024 30 1 4.1362 -3.0356 -0.9316 31 1 4.0083 -3.1102 0.8422 32 1 7.0286 -2.8912 -1.4322 33 1 5.9151 -1.5738 -1.8714 34 1 7.3376 -1.2356 -0.8563 35 1 8.3919 -2.7294 0.8723 36 1 8.0641 -0.9886 1.0468 37 1 7.7059 -1.2992 3.4804 38 1 8.0338 -3.0400 3.3066 39 1 10.0553 -2.0409 6.2178 40 1 1.3319 -2.8607 1.0135 41 1 0.4599 -2.3513 -0.4522 42 1 1.9967 -3.2381 -0.5939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298249213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:30 Heat of formation + Delta-G solvation = -27.755901 kcal Electronic energy + Delta-G solvation = -21006.806655 eV Core-core repulsion = 17951.129300 eV Total energy + Delta-G solvation = -3055.677355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.17082 -38.92669 -35.50265 -33.51543 -33.35016 -32.64022 -30.89426 -28.33448 -27.07247 -26.35358 -26.24293 -24.77515 -21.77253 -20.91235 -20.38170 -18.46361 -16.92653 -16.51945 -16.18824 -15.67516 -15.21946 -14.92775 -14.48301 -14.40345 -14.32487 -13.43105 -13.19774 -12.98731 -12.87771 -12.69949 -12.60274 -12.50898 -12.29585 -12.13394 -12.08124 -11.97826 -11.52021 -11.09758 -10.99761 -10.92082 -10.86500 -10.56331 -9.93902 -9.61591 -9.15235 -8.97873 -8.53589 -8.51998 -8.46332 -8.30768 -5.94705 -3.99070 1.37947 1.40383 3.22672 3.29949 3.33292 3.40568 3.43835 3.73566 4.48128 4.70536 4.75773 4.90788 5.04247 5.07661 5.17526 5.22747 5.24867 5.40171 5.40842 5.42772 5.51787 5.58970 5.62567 5.69636 5.70594 5.75403 5.77682 5.82575 6.12890 6.17959 6.23461 6.25088 6.48108 6.56286 6.59416 6.83884 6.92583 7.05990 7.72893 7.76431 7.88131 8.08884 8.40018 8.75896 9.09689 9.64415 11.16288 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.003545 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.129418 B = 7897.081324 C = 8029.457202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.124 4.124 4 C -0.120 4.120 5 C -0.107 4.107 6 C -0.091 4.091 7 C 0.154 3.846 8 N -0.629 5.629 9 C 0.081 3.919 10 C 0.510 3.490 11 O -0.528 6.528 12 C -0.127 4.127 13 C 0.036 3.964 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.058 3.942 17 N -0.889 5.889 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.085 4.085 23 C -0.118 4.118 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.260 0.740 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.955 2.657 -16.574 23.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.125 4.125 6 C -0.092 4.092 7 C 0.031 3.969 8 N -0.365 5.365 9 C -0.062 4.062 10 C 0.301 3.699 11 O -0.403 6.403 12 C -0.167 4.167 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.085 4.085 23 C -0.174 4.174 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.278 2.503 -15.827 22.841 hybrid contribution 1.112 0.353 0.094 1.171 sum -15.166 2.856 -15.733 22.038 Atomic orbital electron populations 1.20792 0.91484 1.02719 1.01972 1.19682 0.95724 0.92623 1.00982 1.20955 0.94269 0.97214 1.01780 1.21117 0.94249 0.98008 1.00466 1.21043 1.00298 0.91700 0.99426 1.20196 0.93090 0.96002 0.99951 1.20250 0.80151 0.93745 1.02720 1.48030 1.07889 1.73008 1.07594 1.21767 0.96088 1.01306 0.87082 1.21616 0.91515 0.75191 0.81624 1.90668 1.66210 1.47325 1.36066 1.21884 0.88659 1.01822 1.04340 1.18911 0.95495 0.98510 0.87194 1.21252 0.93670 1.48698 0.92782 0.92578 1.25030 0.98059 0.95370 0.95951 1.70007 1.35525 1.49151 0.98115 0.86544 0.85569 0.77842 0.78057 1.19747 1.21025 1.21029 1.19486 0.92719 0.94982 1.01325 1.20847 0.99780 0.94226 1.02584 0.91456 0.91354 0.91751 0.86449 0.86243 0.85900 0.89928 0.88529 0.92661 0.91449 0.90723 0.90249 0.90342 0.95869 0.95863 0.93019 0.90918 0.91425 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.18 36.01 0.33 -0.62 16 2 C -0.09 -1.04 5.88 -104.62 -0.62 -1.65 16 3 C -0.12 -1.46 9.70 -39.58 -0.38 -1.84 16 4 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 5 C -0.11 -1.51 9.17 -39.58 -0.36 -1.87 16 6 C -0.09 -1.25 5.88 -104.62 -0.61 -1.87 16 7 C 0.15 2.07 4.53 -5.19 -0.02 2.05 16 8 N -0.63 -9.36 1.72 -182.95 -0.32 -9.68 16 9 C 0.08 0.88 9.05 59.85 0.54 1.42 16 10 C 0.51 10.13 7.57 -10.99 -0.08 10.05 16 11 O -0.53 -12.80 15.50 5.55 0.09 -12.71 16 12 C -0.13 -2.63 4.26 -27.88 -0.12 -2.75 16 13 C 0.04 0.99 4.26 -27.88 -0.12 0.88 16 14 C -0.53 -15.03 9.11 -34.44 -0.31 -15.34 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.67 13.29 55.43 0.74 -26.94 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.08 -1.04 5.88 -104.62 -0.62 -1.65 16 23 C -0.12 -1.12 8.76 36.01 0.32 -0.80 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.53 6.62 -51.93 -0.34 0.19 16 26 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 27 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.12 1.78 6.12 -52.49 -0.32 1.46 16 30 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 31 H 0.10 1.47 7.19 -51.93 -0.37 1.10 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.60 8.03 -51.93 -0.42 0.18 16 34 H 0.07 0.80 6.67 -51.93 -0.35 0.46 16 35 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 36 H 0.08 1.48 7.41 -51.93 -0.38 1.09 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.52 6.45 -51.93 -0.34 0.19 16 42 H 0.07 0.56 6.96 -51.93 -0.36 0.20 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -34.79 342.24 -8.53 -43.33 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.62 Total: -1.57 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -2.56 Total: -14.36 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.42 Total: -36.61 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.79 -8.53 -43.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298249213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.572 kcal (2) G-P(sol) polarization free energy of solvation -34.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds