Wall clock time and date at job start Mon Mar 30 2020 02:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00213 * 2 1 4 4 C 1.38221 * 120.00104 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.99827 * 0.02562 * 4 3 2 6 6 C 1.38211 * 119.99862 * 359.95551 * 5 4 3 7 7 C 1.50702 * 119.99784 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47170 * 4.80817 * 7 6 5 9 9 C 1.46507 * 119.99797 * 273.87130 * 8 7 6 10 10 C 1.34779 * 120.00338 * 94.14634 * 8 7 6 11 11 O 1.21283 * 119.99681 * 359.72595 * 10 8 7 12 12 C 1.50697 * 119.99998 * 179.72511 * 10 8 7 13 13 C 1.53007 * 109.46827 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.46827 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00493 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99464 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00497 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99519 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47214 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46976 * 119.99791 * 18 16 14 21 21 H 1.48496 * 109.46945 * 239.99470 * 18 16 14 22 22 C 1.38213 * 119.99740 * 180.20642 * 2 1 3 23 23 C 1.50703 * 120.00133 * 0.02562 * 22 2 1 24 24 H 1.08998 * 109.46729 * 89.99662 * 1 2 3 25 25 H 1.08996 * 109.47101 * 209.99862 * 1 2 3 26 26 H 1.08999 * 109.46864 * 329.99977 * 1 2 3 27 27 H 1.07998 * 120.00009 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.00327 * 179.97438 * 4 3 2 29 29 H 1.07997 * 119.99572 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.46957 * 244.80397 * 7 6 5 31 31 H 1.09004 * 109.46668 * 124.80619 * 7 6 5 32 32 H 1.08998 * 109.46788 * 264.84825 * 9 8 7 33 33 H 1.08997 * 109.46700 * 24.85058 * 9 8 7 34 34 H 1.08998 * 109.46875 * 144.84745 * 9 8 7 35 35 H 1.08994 * 109.47127 * 299.99975 * 12 10 8 36 36 H 1.08998 * 109.47249 * 60.00102 * 12 10 8 37 37 H 1.09000 * 109.47296 * 300.00434 * 13 12 10 38 38 H 1.08998 * 109.47030 * 60.00082 * 13 12 10 39 39 H 0.96993 * 120.00391 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.47001 * 265.52259 * 23 22 2 41 41 H 1.09001 * 109.47062 * 25.52573 * 23 22 2 42 42 H 1.09002 * 109.47107 * 145.52360 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2718 -0.0002 -0.0016 6 6 3.5806 -1.1971 -0.0012 7 6 4.3341 -2.5022 -0.0018 8 7 5.7703 -2.2370 0.1130 9 6 6.5637 -1.9671 -1.0887 10 6 6.3628 -2.2468 1.3236 11 8 5.7060 -2.4703 2.3183 12 6 7.8413 -1.9801 1.4410 13 6 8.2566 -2.0487 2.9120 14 6 9.7353 -1.7827 3.0293 15 1 10.3204 -1.5849 2.1434 16 6 10.3413 -1.7928 4.2678 17 7 9.6290 -2.0341 5.3466 18 14 12.1744 -1.4637 4.4132 19 1 12.7427 -1.2228 3.0626 20 1 12.3965 -0.2675 5.2647 21 1 12.8412 -2.6396 5.0278 22 6 2.1980 -1.1970 -0.0043 23 6 1.4445 -2.5021 -0.0096 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6584 2.1326 -0.0004 28 1 4.1206 2.1325 -0.0010 29 1 5.3518 -0.0002 -0.0024 30 1 4.1362 -3.0356 -0.9316 31 1 4.0083 -3.1102 0.8422 32 1 7.0286 -2.8912 -1.4322 33 1 5.9151 -1.5738 -1.8714 34 1 7.3376 -1.2356 -0.8563 35 1 8.3919 -2.7294 0.8723 36 1 8.0641 -0.9886 1.0468 37 1 7.7059 -1.2992 3.4804 38 1 8.0338 -3.0400 3.3066 39 1 10.0553 -2.0409 6.2178 40 1 1.3319 -2.8607 1.0135 41 1 0.4599 -2.3513 -0.4522 42 1 1.9967 -3.2381 -0.5939 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298249213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:29 Heat of formation + Delta-G solvation = -47.442193 kcal Electronic energy + Delta-G solvation = -21007.660316 eV Core-core repulsion = 17951.129300 eV Total energy + Delta-G solvation = -3056.531016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34344 -40.17698 -36.82785 -35.60539 -34.22291 -33.79894 -32.75305 -29.36136 -28.02748 -27.91185 -27.15309 -26.28618 -23.56026 -21.84519 -21.57672 -19.89412 -18.79487 -17.61075 -17.57230 -17.17039 -16.51496 -16.37785 -16.09441 -15.43090 -15.31530 -14.73632 -14.55235 -14.13390 -13.89443 -13.86851 -13.79370 -13.54642 -13.46496 -13.35007 -13.31230 -13.02898 -12.85121 -12.71654 -12.48235 -12.39138 -11.97067 -11.86766 -11.73886 -11.60073 -11.29107 -10.70518 -10.58553 -9.72030 -9.48711 -9.42567 -8.18567 -6.32923 0.42700 0.45376 1.41635 1.43319 1.56642 1.67804 2.05400 2.42831 2.78475 3.14375 3.78278 3.81129 3.92892 4.02536 4.14984 4.28171 4.32414 4.41148 4.47371 4.48328 4.50092 4.53063 4.74952 4.78743 4.79911 4.84430 4.85743 4.91513 4.95865 5.03727 5.08127 5.27065 5.34430 5.44060 5.49293 5.60038 5.61242 5.69053 5.80021 5.84706 6.14542 6.16583 6.36811 6.85688 7.25918 7.37535 8.94456 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028648 B = 0.003545 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.129418 B = 7897.081324 C = 8029.457202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.096 4.096 3 C -0.131 4.131 4 C -0.133 4.133 5 C -0.131 4.131 6 C -0.109 4.109 7 C 0.155 3.845 8 N -0.614 5.614 9 C 0.072 3.928 10 C 0.509 3.491 11 O -0.587 6.587 12 C -0.115 4.115 13 C 0.043 3.957 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.251 1.251 20 H -0.281 1.281 21 H -0.280 1.280 22 C -0.096 4.096 23 C -0.117 4.117 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.140 0.860 28 H 0.131 0.869 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.101 0.899 37 H -0.022 1.022 38 H -0.019 1.019 39 H 0.263 0.737 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.823 3.205 -19.277 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.110 4.110 7 C 0.033 3.967 8 N -0.347 5.347 9 C -0.069 4.069 10 C 0.299 3.701 11 O -0.467 6.467 12 C -0.154 4.154 13 C 0.006 3.994 14 C -0.579 4.579 15 H 0.095 0.905 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.799 3.201 19 H -0.175 1.175 20 H -0.207 1.207 21 H -0.206 1.206 22 C -0.097 4.097 23 C -0.173 4.173 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.158 0.842 28 H 0.149 0.851 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.119 0.881 37 H -0.003 1.003 38 H -0.001 1.001 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.152 3.058 -18.616 24.836 hybrid contribution 0.973 0.206 0.890 1.334 sum -15.180 3.264 -17.727 23.565 Atomic orbital electron populations 1.20851 0.89126 1.03517 1.03286 1.20129 0.97564 0.92259 0.99699 1.21295 0.94019 0.98468 1.01054 1.21350 0.95105 0.98091 1.00579 1.21108 1.00040 0.92649 1.01115 1.20295 0.94013 0.95691 1.01007 1.20382 0.78902 0.93970 1.03473 1.47935 1.08922 1.70738 1.07118 1.22095 0.96407 1.02629 0.85800 1.21402 0.91091 0.75066 0.82533 1.90645 1.67120 1.50462 1.38429 1.21638 0.89911 1.03953 0.99935 1.18683 0.95161 0.94548 0.91022 1.21730 0.94265 1.48211 0.93691 0.90522 1.26163 1.04029 0.94859 0.95484 1.70189 1.38248 1.50469 0.98933 0.85256 0.78293 0.77612 0.78975 1.17467 1.20655 1.20592 1.19840 0.92410 0.96568 1.00843 1.20893 1.00733 0.93114 1.02547 0.89725 0.90730 0.90852 0.84203 0.85089 0.86899 0.86287 0.90864 0.90625 0.88897 0.90375 0.87805 0.88084 1.00320 1.00068 0.92868 0.91614 0.89314 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.18 71.24 0.65 -0.94 16 2 C -0.10 -2.07 5.88 -19.87 -0.12 -2.19 16 3 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 4 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 5 C -0.13 -3.71 9.17 22.27 0.20 -3.51 16 6 C -0.11 -2.95 5.88 -19.86 -0.12 -3.07 16 7 C 0.16 4.08 4.53 85.63 0.39 4.46 16 8 N -0.61 -17.86 1.72 -851.12 -1.47 -19.33 16 9 C 0.07 1.39 9.05 127.77 1.16 2.55 16 10 C 0.51 20.75 7.57 87.66 0.66 21.42 16 11 O -0.59 -30.25 15.50 -3.04 -0.05 -30.30 16 12 C -0.11 -4.78 4.26 29.85 0.13 -4.65 16 13 C 0.04 2.49 4.26 29.85 0.13 2.62 16 14 C -0.54 -31.27 9.11 25.60 0.23 -31.03 16 15 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 16 C -0.01 -0.48 5.46 84.66 0.46 -0.01 16 17 N -0.94 -60.48 13.29 21.45 0.28 -60.19 16 18 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 19 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 C -0.10 -2.26 5.88 -19.86 -0.12 -2.38 16 23 C -0.12 -2.04 8.76 71.24 0.62 -1.41 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.98 6.62 -2.39 -0.02 0.96 16 26 H 0.07 0.93 8.09 -2.39 -0.02 0.91 16 27 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 29 H 0.11 3.30 6.12 -2.91 -0.02 3.28 16 30 H 0.12 2.21 7.69 -2.39 -0.02 2.19 16 31 H 0.07 2.30 7.19 -2.38 -0.02 2.28 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 34 H 0.08 1.49 6.67 -2.39 -0.02 1.47 16 35 H 0.10 3.79 8.11 -2.39 -0.02 3.77 16 36 H 0.10 3.72 7.41 -2.39 -0.02 3.70 16 37 H -0.02 -1.41 8.10 -2.39 -0.02 -1.43 16 38 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 39 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.15 6.45 -2.39 -0.02 1.13 16 42 H 0.08 1.16 6.96 -2.39 -0.02 1.14 16 Total: -1.00 -80.22 342.24 6.52 -73.70 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.99 Total: 13.29 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 4.73 Total: -23.94 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -1.18 Total: -79.52 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.05 Total: -30.30 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -80.22 6.52 -73.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298249213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.259 kcal (2) G-P(sol) polarization free energy of solvation -80.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds