Wall clock time and date at job start Mon Mar 30 2020 01:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38289 * 119.95235 * 2 1 4 4 C 1.38187 * 120.23137 * 179.78409 * 3 2 1 5 5 C 1.38803 * 119.68376 * 359.32336 * 4 3 2 6 6 C 1.38187 * 119.83014 * 1.38368 * 5 4 3 7 7 C 1.37955 * 120.49366 * 358.76536 * 6 5 4 8 8 C 1.51671 * 119.30676 * 177.88171 * 6 5 4 9 9 N 1.46711 * 108.78816 * 68.24540 * 8 6 5 10 10 C 1.46900 * 111.00095 * 40.77997 * 9 8 6 11 11 H 1.09005 * 109.47425 * 323.91762 * 10 9 8 12 12 C 1.53003 * 109.47232 * 203.92136 * 10 9 8 13 13 C 1.52999 * 109.47054 * 83.91996 * 10 9 8 14 14 C 1.50705 * 109.47237 * 299.17023 * 13 10 9 15 15 H 1.07998 * 119.99446 * 354.99853 * 14 13 10 16 16 C 1.37872 * 120.00307 * 174.99999 * 14 13 10 17 17 N 1.31517 * 119.99990 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00526 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46828 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47265 * 119.99488 * 18 16 14 21 21 H 1.48498 * 109.47084 * 240.00343 * 18 16 14 22 22 C 1.46026 * 112.58703 * 275.64994 * 9 8 6 23 23 C 1.51359 * 113.62348 * 68.79992 * 22 9 8 24 24 O 1.36077 * 120.16052 * 182.03937 * 5 4 3 25 25 H 1.08993 * 109.47000 * 89.99853 * 1 2 3 26 26 H 1.09006 * 109.46747 * 210.00076 * 1 2 3 27 27 H 1.09004 * 109.46818 * 329.99745 * 1 2 3 28 28 H 1.08003 * 119.88742 * 359.50776 * 3 2 1 29 29 H 1.08009 * 120.15944 * 179.58111 * 4 3 2 30 30 H 1.08000 * 120.17209 * 180.33608 * 7 6 5 31 31 H 1.08997 * 109.58381 * 188.03446 * 8 6 5 32 32 H 1.08996 * 109.58239 * 308.45384 * 8 6 5 33 33 H 1.08990 * 109.47130 * 65.01081 * 12 10 9 34 34 H 1.09001 * 109.47197 * 185.01550 * 12 10 9 35 35 H 1.08996 * 109.46748 * 305.01319 * 12 10 9 36 36 H 1.08995 * 109.47435 * 59.17244 * 13 10 9 37 37 H 1.09000 * 109.46971 * 179.17165 * 13 10 9 38 38 H 0.97000 * 120.00249 * 180.02562 * 17 16 14 39 39 H 1.08998 * 108.65257 * 189.86789 * 22 9 8 40 40 H 1.09000 * 108.65398 * 307.86162 * 22 9 8 41 41 H 1.08995 * 109.22552 * 55.19654 * 23 22 9 42 42 H 1.08999 * 109.22636 * 174.59825 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1982 0.0000 4 6 3.5793 1.2049 0.0045 5 6 4.2725 0.0025 0.0233 6 6 3.5776 -1.1918 0.0084 7 6 2.1981 -1.1990 0.0005 8 6 4.3474 -2.4983 -0.0197 9 7 5.0407 -2.6660 1.2623 10 6 4.1855 -2.2495 2.3817 11 1 3.5849 -1.3911 2.0804 12 6 5.0605 -1.8654 3.5766 13 6 3.2627 -3.4045 2.7756 14 6 2.3866 -3.7694 1.6049 15 1 2.4212 -3.1802 0.7005 16 6 1.5410 -4.8551 1.6886 17 7 1.4993 -5.5728 2.7899 18 14 0.4556 -5.3078 0.2373 19 1 0.6894 -4.3500 -0.8733 20 1 0.7844 -6.6828 -0.2169 21 1 -0.9702 -5.2497 0.6484 22 6 6.3258 -1.9734 1.2997 23 6 6.2020 -0.4649 1.3006 24 8 5.6325 -0.0020 0.0697 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6549 2.1320 -0.0080 29 1 4.1174 2.1414 -0.0023 30 1 1.6602 -2.1355 -0.0056 31 1 3.6556 -3.3268 -0.1720 32 1 5.0769 -2.4752 -0.8293 33 1 5.6538 -0.9865 3.3248 34 1 4.4262 -1.6421 4.4345 35 1 5.7246 -2.6941 3.8218 36 1 3.8632 -4.2676 3.0629 37 1 2.6384 -3.1004 3.6158 38 1 0.9046 -6.3369 2.8486 39 1 6.8608 -2.2798 2.1986 40 1 6.9088 -2.2730 0.4288 41 1 5.5641 -0.1576 2.1293 42 1 7.1908 -0.0237 1.4261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298601053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:50 Heat of formation + Delta-G solvation = 18.344253 kcal Electronic energy + Delta-G solvation = -23082.047932 eV Core-core repulsion = 20028.369630 eV Total energy + Delta-G solvation = -3053.678302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76272 -37.75244 -36.85564 -32.98898 -32.59298 -31.50136 -30.62927 -28.85232 -27.23693 -25.68731 -24.91768 -23.38198 -22.41010 -21.49320 -20.22597 -18.73680 -17.52338 -16.47705 -16.12458 -15.34974 -15.02840 -14.84183 -14.64026 -14.10669 -14.03698 -13.69912 -13.24212 -13.08920 -12.77201 -12.20510 -12.09641 -11.94715 -11.64868 -11.51195 -11.35760 -11.29953 -11.12730 -10.99090 -10.79632 -10.72080 -10.45035 -10.08726 -10.03117 -9.83750 -9.11862 -8.72280 -8.35282 -8.22747 -7.95134 -7.43713 -5.94470 -3.92549 1.53477 1.73918 3.29846 3.36973 3.39039 3.69731 4.25162 4.46373 4.68212 5.10644 5.17366 5.20931 5.26159 5.40346 5.41827 5.45085 5.61381 5.65774 5.77758 5.80872 5.84037 5.88082 5.99255 6.00958 6.06780 6.14669 6.22729 6.26638 6.46807 6.49145 6.59498 6.66966 6.75863 6.91486 7.06299 7.08163 7.13558 7.53972 7.74551 7.78242 7.90943 8.08036 8.12089 8.52419 9.10300 9.67131 11.17873 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.009165 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.767793 B = 3054.523671 C = 4195.362537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.115 4.115 4 C -0.140 4.140 5 C 0.083 3.917 6 C -0.122 4.122 7 C -0.082 4.082 8 C 0.090 3.910 9 N -0.505 5.505 10 C 0.075 3.925 11 H 0.045 0.955 12 C -0.165 4.165 13 C 0.036 3.964 14 C -0.520 4.520 15 H 0.083 0.917 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.873 3.127 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.020 3.980 23 C 0.018 3.982 24 O -0.330 6.330 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.151 0.849 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.026 0.974 37 H 0.011 0.989 38 H 0.257 0.743 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 11.717 -3.874 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.133 4.133 4 C -0.158 4.158 5 C 0.039 3.961 6 C -0.124 4.124 7 C -0.100 4.100 8 C -0.038 4.038 9 N -0.227 5.227 10 C -0.031 4.031 11 H 0.062 0.938 12 C -0.222 4.222 13 C -0.001 4.001 14 C -0.558 4.558 15 H 0.101 0.899 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.702 3.298 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.110 4.110 23 C -0.058 4.058 24 O -0.247 6.247 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.169 0.831 31 H 0.137 0.863 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.030 0.970 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.656 11.092 -3.863 12.635 hybrid contribution -0.837 0.460 -0.571 1.113 sum 3.819 11.553 -4.434 12.950 Atomic orbital electron populations 1.20766 0.91375 1.02922 1.01873 1.20006 0.96160 0.93078 1.00699 1.20788 0.93259 0.97424 1.01873 1.21025 0.94134 0.96866 1.03783 1.18553 0.82964 0.92480 1.02101 1.21079 0.95079 0.96249 1.00035 1.21532 0.93279 0.98763 0.96426 1.21826 0.96917 0.93853 0.91157 1.61816 1.03069 1.55082 1.02687 1.22043 0.93388 0.99347 0.88366 0.93764 1.22413 1.00310 1.00484 0.99023 1.19077 0.92791 0.92092 0.96141 1.21915 1.20813 1.11989 1.01083 0.89920 1.24983 0.97310 0.96713 0.95315 1.69974 1.38599 1.18584 1.26298 0.86835 0.80874 0.78792 0.83333 1.19559 1.21053 1.21174 1.22391 0.94388 0.91092 1.03091 1.23673 0.98922 0.97380 0.85839 1.86268 1.16592 1.85443 1.36399 0.91625 0.90942 0.91977 0.86332 0.86159 0.83128 0.86350 0.91588 0.93206 0.92692 0.92168 0.95567 0.97045 0.93329 0.89758 0.91029 0.91183 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 36.01 0.36 -1.19 16 2 C -0.10 -1.62 5.89 -104.54 -0.62 -2.24 16 3 C -0.12 -1.71 9.69 -39.58 -0.38 -2.09 16 4 C -0.14 -2.18 10.01 -39.39 -0.39 -2.57 16 5 C 0.08 1.45 5.37 -39.39 -0.21 1.24 16 6 C -0.12 -2.29 3.12 -104.27 -0.32 -2.61 16 7 C -0.08 -1.54 7.98 -39.63 -0.32 -1.86 16 8 C 0.09 1.74 5.04 -4.60 -0.02 1.72 16 9 N -0.51 -9.75 4.64 -229.42 -1.06 -10.82 16 10 C 0.08 1.54 1.67 -67.71 -0.11 1.43 16 11 H 0.04 0.95 5.10 -51.93 -0.26 0.69 16 12 C -0.17 -2.83 7.74 37.16 0.29 -2.55 16 13 C 0.04 0.91 4.69 -27.88 -0.13 0.78 16 14 C -0.52 -13.46 7.40 -34.44 -0.25 -13.71 16 15 H 0.08 1.97 1.01 -52.49 -0.05 1.92 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 17 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 18 Si 0.87 20.63 29.54 -169.99 -5.02 15.61 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.02 0.31 4.91 -5.13 -0.03 0.28 16 23 C 0.02 0.26 5.67 36.33 0.21 0.47 16 24 O -0.33 -5.58 10.04 -19.98 -0.20 -5.78 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 27 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 30 H 0.15 3.10 5.67 -52.49 -0.30 2.81 16 31 H 0.12 2.56 5.31 -51.93 -0.28 2.28 16 32 H 0.07 1.20 7.75 -51.93 -0.40 0.79 16 33 H 0.05 0.73 4.37 -51.93 -0.23 0.51 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.02 7.59 -51.93 -0.39 0.62 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.08 1.22 6.50 -51.93 -0.34 0.88 16 40 H 0.07 1.08 7.89 -51.93 -0.41 0.67 16 41 H 0.07 1.07 4.81 -51.93 -0.25 0.82 16 42 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 310.76 15.07 4.68 4.68 Total: -1.00 -29.20 310.76 -8.75 -37.94 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.85 Total: 5.28 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -2.04 Total: -21.44 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: -0.33 Total: -36.30 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.20 Total: -5.78 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.20 -8.75 -37.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298601053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.286 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds