Wall clock time and date at job start Mon Mar 30 2020 01:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38289 * 119.95235 * 2 1 4 4 C 1.38187 * 120.23137 * 179.78409 * 3 2 1 5 5 C 1.38803 * 119.68376 * 359.32336 * 4 3 2 6 6 C 1.38187 * 119.83014 * 1.38368 * 5 4 3 7 7 C 1.37955 * 120.49366 * 358.76536 * 6 5 4 8 8 C 1.51671 * 119.30676 * 177.88171 * 6 5 4 9 9 N 1.46711 * 108.78816 * 68.24540 * 8 6 5 10 10 C 1.46900 * 111.00095 * 40.77997 * 9 8 6 11 11 H 1.09005 * 109.47425 * 323.91762 * 10 9 8 12 12 C 1.53003 * 109.47232 * 203.92136 * 10 9 8 13 13 C 1.52999 * 109.47054 * 83.91996 * 10 9 8 14 14 C 1.50705 * 109.47237 * 299.17023 * 13 10 9 15 15 H 1.07998 * 119.99446 * 354.99853 * 14 13 10 16 16 C 1.37872 * 120.00307 * 174.99999 * 14 13 10 17 17 N 1.31517 * 119.99990 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00526 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46828 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47265 * 119.99488 * 18 16 14 21 21 H 1.48498 * 109.47084 * 240.00343 * 18 16 14 22 22 C 1.46026 * 112.58703 * 275.64994 * 9 8 6 23 23 C 1.51359 * 113.62348 * 68.79992 * 22 9 8 24 24 O 1.36077 * 120.16052 * 182.03937 * 5 4 3 25 25 H 1.08993 * 109.47000 * 89.99853 * 1 2 3 26 26 H 1.09006 * 109.46747 * 210.00076 * 1 2 3 27 27 H 1.09004 * 109.46818 * 329.99745 * 1 2 3 28 28 H 1.08003 * 119.88742 * 359.50776 * 3 2 1 29 29 H 1.08009 * 120.15944 * 179.58111 * 4 3 2 30 30 H 1.08000 * 120.17209 * 180.33608 * 7 6 5 31 31 H 1.08997 * 109.58381 * 188.03446 * 8 6 5 32 32 H 1.08996 * 109.58239 * 308.45384 * 8 6 5 33 33 H 1.08990 * 109.47130 * 65.01081 * 12 10 9 34 34 H 1.09001 * 109.47197 * 185.01550 * 12 10 9 35 35 H 1.08996 * 109.46748 * 305.01319 * 12 10 9 36 36 H 1.08995 * 109.47435 * 59.17244 * 13 10 9 37 37 H 1.09000 * 109.46971 * 179.17165 * 13 10 9 38 38 H 0.97000 * 120.00249 * 180.02562 * 17 16 14 39 39 H 1.08998 * 108.65257 * 189.86789 * 22 9 8 40 40 H 1.09000 * 108.65398 * 307.86162 * 22 9 8 41 41 H 1.08995 * 109.22552 * 55.19654 * 23 22 9 42 42 H 1.08999 * 109.22636 * 174.59825 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1982 0.0000 4 6 3.5793 1.2049 0.0045 5 6 4.2725 0.0025 0.0233 6 6 3.5776 -1.1918 0.0084 7 6 2.1981 -1.1990 0.0005 8 6 4.3474 -2.4983 -0.0197 9 7 5.0407 -2.6660 1.2623 10 6 4.1855 -2.2495 2.3817 11 1 3.5849 -1.3911 2.0804 12 6 5.0605 -1.8654 3.5766 13 6 3.2627 -3.4045 2.7756 14 6 2.3866 -3.7694 1.6049 15 1 2.4212 -3.1802 0.7005 16 6 1.5410 -4.8551 1.6886 17 7 1.4993 -5.5728 2.7899 18 14 0.4556 -5.3078 0.2373 19 1 0.6894 -4.3500 -0.8733 20 1 0.7844 -6.6828 -0.2169 21 1 -0.9702 -5.2497 0.6484 22 6 6.3258 -1.9734 1.2997 23 6 6.2020 -0.4649 1.3006 24 8 5.6325 -0.0020 0.0697 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6549 2.1320 -0.0080 29 1 4.1174 2.1414 -0.0023 30 1 1.6602 -2.1355 -0.0056 31 1 3.6556 -3.3268 -0.1720 32 1 5.0769 -2.4752 -0.8293 33 1 5.6538 -0.9865 3.3248 34 1 4.4262 -1.6421 4.4345 35 1 5.7246 -2.6941 3.8218 36 1 3.8632 -4.2676 3.0629 37 1 2.6384 -3.1004 3.6158 38 1 0.9046 -6.3369 2.8486 39 1 6.8608 -2.2798 2.1986 40 1 6.9088 -2.2730 0.4288 41 1 5.5641 -0.1576 2.1293 42 1 7.1908 -0.0237 1.4261 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298601053.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:50 Heat of formation + Delta-G solvation = 0.403684 kcal Electronic energy + Delta-G solvation = -23082.825894 eV Core-core repulsion = 20028.369630 eV Total energy + Delta-G solvation = -3054.456264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10530 -39.05502 -38.25450 -34.94665 -33.93454 -32.90009 -32.15359 -30.19566 -28.95271 -26.96531 -26.31090 -25.14806 -23.75938 -23.03463 -21.51828 -20.23263 -19.03839 -18.08327 -17.68509 -16.74513 -16.63231 -16.32720 -15.90069 -15.74672 -15.40766 -14.92432 -14.60666 -14.38410 -14.18104 -13.86683 -13.63519 -13.31957 -13.22151 -13.14835 -12.87712 -12.72722 -12.56929 -12.47519 -12.40061 -12.20569 -12.05490 -11.72718 -11.52460 -11.22625 -10.84695 -10.55901 -10.45541 -9.64557 -9.21589 -8.94134 -8.07180 -6.09666 0.27180 0.45281 1.37559 1.40135 1.48878 2.44948 2.46333 2.99166 3.21549 3.30937 3.82311 3.91470 4.03449 4.04244 4.15932 4.20464 4.36454 4.40809 4.47439 4.53166 4.54318 4.62445 4.64763 4.76475 4.84502 4.85104 4.93818 5.01685 5.07884 5.15713 5.18240 5.28126 5.35995 5.40428 5.53780 5.60438 5.72315 5.74468 5.89007 5.96264 6.36798 6.37069 6.54926 6.58390 7.03582 7.54281 9.06608 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015224 B = 0.009165 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.767793 B = 3054.523671 C = 4195.362537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.105 4.105 3 C -0.106 4.106 4 C -0.135 4.135 5 C 0.072 3.928 6 C -0.137 4.137 7 C -0.109 4.109 8 C 0.093 3.907 9 N -0.525 5.525 10 C 0.089 3.911 11 H 0.037 0.963 12 C -0.160 4.160 13 C 0.041 3.959 14 C -0.518 4.518 15 H 0.106 0.894 16 C -0.002 4.002 17 N -0.940 5.940 18 Si 0.934 3.066 19 H -0.253 1.253 20 H -0.288 1.288 21 H -0.284 1.284 22 C 0.018 3.982 23 C 0.020 3.980 24 O -0.336 6.336 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.156 0.844 29 H 0.148 0.852 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.060 0.940 36 H -0.010 1.010 37 H -0.018 1.018 38 H 0.255 0.745 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.271 14.824 -5.046 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.105 4.105 3 C -0.124 4.124 4 C -0.154 4.154 5 C 0.028 3.972 6 C -0.139 4.139 7 C -0.127 4.127 8 C -0.034 4.034 9 N -0.247 5.247 10 C -0.019 4.019 11 H 0.055 0.945 12 C -0.217 4.217 13 C 0.004 3.996 14 C -0.556 4.556 15 H 0.123 0.877 16 C -0.198 4.198 17 N -0.583 5.583 18 Si 0.761 3.239 19 H -0.176 1.176 20 H -0.214 1.214 21 H -0.210 1.210 22 C -0.110 4.110 23 C -0.056 4.056 24 O -0.253 6.253 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.174 0.826 29 H 0.165 0.835 30 H 0.140 0.860 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.008 0.992 37 H 0.000 1.000 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.447 14.219 -5.054 16.043 hybrid contribution -1.028 -0.468 -0.209 1.148 sum 4.420 13.751 -5.262 15.373 Atomic orbital electron populations 1.20816 0.89773 1.03229 1.03057 1.20300 0.97500 0.92789 0.99885 1.21174 0.93223 0.98134 0.99906 1.21375 0.94596 0.97150 1.02241 1.18696 0.83397 0.92597 1.02514 1.20977 0.95047 0.96344 1.01529 1.21364 0.93581 0.98791 0.98999 1.21591 0.96706 0.93532 0.91563 1.61626 1.04183 1.56755 1.02133 1.21700 0.93459 0.96570 0.90129 0.94502 1.22372 1.00062 1.01851 0.97408 1.18961 0.92919 0.92712 0.95048 1.22501 1.19613 1.11478 1.01998 0.87722 1.25807 0.99105 0.97114 0.97768 1.70133 1.40055 1.19459 1.28624 0.85846 0.78914 0.78392 0.80777 1.17630 1.21430 1.20968 1.22485 0.92228 0.92054 1.04281 1.23765 1.00525 0.96345 0.84930 1.86263 1.16179 1.85415 1.37440 0.89945 0.92839 0.89458 0.82617 0.83453 0.86011 0.89661 0.90707 0.89920 0.92937 0.92119 0.99158 1.00015 0.93645 0.88226 0.90255 0.91701 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.86 10.01 71.24 0.71 -2.14 16 2 C -0.10 -3.22 5.89 -19.81 -0.12 -3.34 16 3 C -0.11 -2.76 9.69 22.27 0.22 -2.54 16 4 C -0.14 -3.73 10.01 22.39 0.22 -3.50 16 5 C 0.07 2.35 5.37 22.39 0.12 2.47 16 6 C -0.14 -5.05 3.12 -19.63 -0.06 -5.11 16 7 C -0.11 -4.09 7.98 22.24 0.18 -3.92 16 8 C 0.09 3.66 5.04 85.90 0.43 4.09 16 9 N -0.53 -20.21 4.64 -879.75 -4.08 -24.29 16 10 C 0.09 3.66 1.67 44.92 0.07 3.73 16 11 H 0.04 1.60 5.10 -2.38 -0.01 1.59 16 12 C -0.16 -5.33 7.74 71.98 0.56 -4.77 16 13 C 0.04 2.16 4.69 29.85 0.14 2.30 16 14 C -0.52 -28.03 7.40 25.60 0.19 -27.84 16 15 H 0.11 5.20 1.01 -2.91 0.00 5.19 16 16 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 17 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 18 Si 0.93 43.95 29.54 68.60 2.03 45.98 16 19 H -0.25 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 22 C 0.02 0.52 4.91 85.93 0.42 0.94 16 23 C 0.02 0.51 5.67 71.45 0.41 0.92 16 24 O -0.34 -10.31 10.04 -94.42 -0.95 -11.25 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.05 1.55 8.09 -2.38 -0.02 1.53 16 27 H 0.09 1.76 8.08 -2.38 -0.02 1.74 16 28 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 29 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.12 5.19 5.67 -2.91 -0.02 5.17 16 31 H 0.09 3.83 5.31 -2.39 -0.01 3.82 16 32 H 0.07 2.71 7.75 -2.39 -0.02 2.69 16 33 H 0.08 2.21 4.37 -2.39 -0.01 2.20 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 35 H 0.06 2.00 7.59 -2.39 -0.02 1.99 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 38 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.10 2.60 6.50 -2.39 -0.02 2.59 16 40 H 0.08 2.21 7.89 -2.39 -0.02 2.19 16 41 H 0.06 1.76 4.81 -2.39 -0.01 1.75 16 42 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -66.51 310.76 2.27 -64.24 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 1.03 Total: 21.25 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 3.96 Total: -38.36 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -3.79 Total: -81.86 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.95 Total: -11.25 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -66.51 2.27 -64.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298601053.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.646 kcal (2) G-P(sol) polarization free energy of solvation -66.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds