Wall clock time and date at job start Mon Mar 30 2020 01:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38285 * 119.93843 * 2 1 4 4 C 1.38201 * 120.20973 * 180.67699 * 3 2 1 5 5 C 1.38774 * 119.66568 * 359.41454 * 4 3 2 6 6 C 1.38184 * 119.89891 * 359.75142 * 5 4 3 7 7 C 1.37973 * 120.43568 * 0.97674 * 6 5 4 8 8 C 1.51625 * 119.39736 * 182.30588 * 6 5 4 9 9 N 1.46716 * 108.79731 * 291.49770 * 8 6 5 10 10 C 1.46901 * 111.00125 * 209.35638 * 9 8 6 11 11 H 1.08999 * 109.46910 * 185.65853 * 10 9 8 12 12 C 1.52991 * 109.47064 * 305.66213 * 10 9 8 13 13 C 1.52999 * 109.47116 * 65.66378 * 10 9 8 14 14 C 1.50701 * 109.47318 * 62.17138 * 13 10 9 15 15 H 1.08007 * 119.99974 * 355.46360 * 14 13 10 16 16 C 1.37878 * 120.00193 * 175.46053 * 14 13 10 17 17 N 1.31508 * 119.99922 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00180 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47099 * 60.00179 * 18 16 14 20 20 H 1.48502 * 109.47534 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47126 * 300.00110 * 18 16 14 22 22 C 1.46042 * 112.56156 * 84.23991 * 9 8 6 23 23 C 1.51343 * 113.62089 * 291.31483 * 22 9 8 24 24 O 1.36129 * 120.19445 * 178.88795 * 5 4 3 25 25 H 1.09000 * 109.46690 * 90.00515 * 1 2 3 26 26 H 1.09000 * 109.46880 * 210.00028 * 1 2 3 27 27 H 1.08995 * 109.46968 * 330.00081 * 1 2 3 28 28 H 1.07995 * 119.89815 * 0.40064 * 3 2 1 29 29 H 1.08004 * 120.16785 * 179.68412 * 4 3 2 30 30 H 1.08001 * 120.16781 * 179.12295 * 7 6 5 31 31 H 1.09002 * 109.58754 * 51.29123 * 8 6 5 32 32 H 1.09007 * 109.58374 * 171.70188 * 8 6 5 33 33 H 1.09003 * 109.47487 * 305.63218 * 12 10 9 34 34 H 1.09000 * 109.47361 * 65.63158 * 12 10 9 35 35 H 1.09001 * 109.47366 * 185.62885 * 12 10 9 36 36 H 1.09006 * 109.47379 * 182.17054 * 13 10 9 37 37 H 1.08997 * 109.47143 * 302.17055 * 13 10 9 38 38 H 0.97000 * 120.00170 * 179.97438 * 17 16 14 39 39 H 1.09005 * 108.65028 * 170.24972 * 22 9 8 40 40 H 1.09001 * 108.54546 * 52.31662 * 22 9 8 41 41 H 1.09000 * 109.22164 * 304.89388 * 23 22 9 42 42 H 1.09001 * 109.17967 * 185.53343 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5791 1.2049 -0.0141 5 6 4.2717 0.0024 -0.0160 6 6 3.5776 -1.1923 0.0015 7 6 2.1979 -1.1991 0.0005 8 6 4.3456 -2.4987 0.0524 9 7 5.0507 -2.6825 -1.2210 10 6 5.2137 -4.1090 -1.5315 11 1 5.8256 -4.2184 -2.4269 12 6 5.8980 -4.8115 -0.3572 13 6 3.8403 -4.7387 -1.7723 14 6 3.1886 -4.0827 -2.9623 15 1 3.6694 -3.2468 -3.4487 16 6 1.9785 -4.5496 -3.4301 17 7 1.3933 -5.5678 -2.8382 18 14 1.1710 -3.7370 -4.9055 19 1 2.0729 -3.8373 -6.0811 20 1 -0.1126 -4.4204 -5.2062 21 1 0.9106 -2.3069 -4.6020 22 6 6.3357 -1.9892 -1.2552 23 6 6.2107 -0.4811 -1.2738 24 8 5.6325 -0.0039 -0.0526 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6546 2.1320 0.0065 29 1 4.1174 2.1412 -0.0192 30 1 1.6597 -2.1355 -0.0002 31 1 5.0676 -2.4666 0.8684 32 1 3.6516 -3.3247 0.2083 33 1 6.8311 -4.2997 -0.1213 34 1 5.2413 -4.7889 0.5125 35 1 6.1093 -5.8465 -0.6260 36 1 3.9581 -5.8052 -1.9647 37 1 3.2153 -4.5954 -0.8909 38 1 0.5419 -5.8961 -3.1670 39 1 6.8786 -2.3051 -2.1460 40 1 6.9103 -2.2807 -0.3760 41 1 5.5783 -0.1837 -2.1103 42 1 7.2003 -0.0412 -1.3981 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298601056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:53 Heat of formation + Delta-G solvation = -30.434017 kcal Electronic energy + Delta-G solvation = -22341.022852 eV Core-core repulsion = 19285.229365 eV Total energy + Delta-G solvation = -3055.793487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52395 -39.18767 -38.33602 -35.03855 -33.57077 -33.13133 -32.10363 -29.63874 -29.12144 -27.08737 -26.81599 -25.16428 -23.49175 -22.56940 -21.68193 -20.34171 -18.76240 -18.32548 -17.63361 -16.84349 -16.53835 -16.18393 -15.78818 -15.62817 -15.34100 -14.84219 -14.77840 -14.52295 -14.26244 -13.95666 -13.66346 -13.52372 -13.21352 -13.11160 -13.03561 -12.71548 -12.55269 -12.47399 -12.41162 -12.28205 -12.05500 -11.87916 -11.65268 -11.13180 -11.08825 -10.89864 -10.46441 -9.73303 -9.21071 -8.97565 -8.09230 -6.12646 0.30021 0.46188 1.39421 1.41499 1.48845 2.46181 2.47647 2.91260 3.21585 3.30458 3.81516 3.93789 4.04122 4.07621 4.17395 4.22846 4.34439 4.37655 4.44651 4.50050 4.53981 4.54506 4.59046 4.74094 4.81326 4.84935 4.86600 4.96707 4.99009 5.13231 5.15393 5.18423 5.21728 5.41524 5.47720 5.63729 5.69626 5.73919 5.89401 5.90138 6.26555 6.38351 6.51618 6.57200 7.00026 7.52583 9.02545 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.008342 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.593935 B = 3355.775296 C = 4676.079553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.108 4.108 4 C -0.133 4.133 5 C 0.079 3.921 6 C -0.106 4.106 7 C -0.107 4.107 8 C 0.111 3.889 9 N -0.535 5.535 10 C 0.099 3.901 11 H 0.072 0.928 12 C -0.172 4.172 13 C 0.037 3.963 14 C -0.492 4.492 15 H 0.055 0.945 16 C 0.001 3.999 17 N -0.938 5.938 18 Si 0.947 3.053 19 H -0.270 1.270 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.026 3.974 23 C 0.069 3.931 24 O -0.338 6.338 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.105 0.895 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.061 0.939 36 H -0.003 1.003 37 H -0.007 1.007 38 H 0.258 0.742 39 H 0.093 0.907 40 H 0.041 0.959 41 H 0.052 0.948 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.973 13.086 6.055 15.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.104 4.104 3 C -0.126 4.126 4 C -0.151 4.151 5 C 0.035 3.965 6 C -0.107 4.107 7 C -0.126 4.126 8 C -0.016 4.016 9 N -0.259 5.259 10 C -0.009 4.009 11 H 0.090 0.910 12 C -0.231 4.231 13 C 0.000 4.000 14 C -0.531 4.531 15 H 0.073 0.927 16 C -0.196 4.196 17 N -0.580 5.580 18 Si 0.773 3.227 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.102 4.102 23 C -0.005 4.005 24 O -0.255 6.255 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.175 0.825 29 H 0.168 0.832 30 H 0.123 0.877 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.699 13.226 5.812 15.530 hybrid contribution -0.338 -0.867 -0.353 0.995 sum 5.360 12.359 5.459 14.536 Atomic orbital electron populations 1.20797 0.89602 1.03661 1.02569 1.20259 0.97513 0.92715 0.99918 1.21174 0.93263 0.98135 1.00034 1.21394 0.94602 0.97210 1.01925 1.18657 0.83354 0.92526 1.01979 1.20360 0.94381 0.95222 1.00742 1.20898 0.93225 0.98217 1.00235 1.20954 0.96293 0.94152 0.90217 1.60922 1.21167 1.12117 1.31708 1.21667 0.97235 0.85467 0.96530 0.91021 1.22408 1.00357 1.01434 0.98935 1.19067 0.91526 0.94026 0.95353 1.21368 1.04316 1.14351 1.13043 0.92700 1.25737 0.98255 0.95807 0.99751 1.70070 1.17795 1.27207 1.42919 0.85773 0.77740 0.78644 0.80501 1.19562 1.21240 1.20075 1.22253 0.90502 0.95276 1.02195 1.22806 0.99806 0.93058 0.84863 1.86247 1.16229 1.84887 1.38182 0.91468 0.91925 0.88928 0.82506 0.83243 0.87677 0.93656 0.91653 0.91610 0.93615 0.91969 0.98515 0.98863 0.93345 0.88883 0.94139 0.92991 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.72 10.01 71.24 0.71 -2.01 16 2 C -0.10 -3.19 5.89 -19.82 -0.12 -3.30 16 3 C -0.11 -2.82 9.69 22.27 0.22 -2.60 16 4 C -0.13 -3.70 10.01 22.39 0.22 -3.47 16 5 C 0.08 2.62 5.64 22.39 0.13 2.75 16 6 C -0.11 -3.98 5.45 -19.65 -0.11 -4.09 16 7 C -0.11 -4.02 9.35 22.24 0.21 -3.81 16 8 C 0.11 4.28 3.74 85.89 0.32 4.60 16 9 N -0.54 -20.48 3.88 -879.81 -3.42 -23.90 16 10 C 0.10 3.98 2.25 44.91 0.10 4.09 16 11 H 0.07 2.87 7.80 -2.39 -0.02 2.85 16 12 C -0.17 -5.78 8.62 71.98 0.62 -5.16 16 13 C 0.04 1.93 4.36 29.85 0.13 2.06 16 14 C -0.49 -27.84 8.79 25.60 0.23 -27.61 16 15 H 0.05 3.11 7.67 -2.91 -0.02 3.08 16 16 C 0.00 0.04 5.46 84.66 0.46 0.50 16 17 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 18 Si 0.95 45.68 29.54 68.60 2.03 47.71 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 C 0.03 0.76 4.79 85.92 0.41 1.18 16 23 C 0.07 1.87 6.63 71.44 0.47 2.34 16 24 O -0.34 -10.54 10.04 -95.01 -0.95 -11.50 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 27 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 28 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 29 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.11 4.33 7.99 -2.91 -0.02 4.31 16 31 H 0.05 1.64 7.71 -2.39 -0.02 1.62 16 32 H 0.07 2.83 5.20 -2.38 -0.01 2.81 16 33 H 0.06 1.88 6.80 -2.39 -0.02 1.86 16 34 H 0.04 1.58 7.05 -2.39 -0.02 1.56 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 37 H -0.01 -0.38 6.17 -2.39 -0.01 -0.39 16 38 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.09 2.51 7.75 -2.38 -0.02 2.49 16 40 H 0.04 1.14 6.83 -2.39 -0.02 1.13 16 41 H 0.05 1.54 7.90 -2.39 -0.02 1.52 16 42 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -66.77 330.76 2.94 -63.83 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.99 Total: 15.34 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 4.01 Total: -34.53 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -3.13 Total: -80.85 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.95 Total: -11.50 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -66.77 2.94 -63.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298601056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.393 kcal (2) G-P(sol) polarization free energy of solvation -66.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds