Wall clock time and date at job start Mon Mar 30 2020 01:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00158 * 2 1 4 4 H 1.48500 * 109.47280 * 270.00495 * 3 2 1 5 5 H 1.48505 * 109.46466 * 30.00240 * 3 2 1 6 6 H 1.48490 * 109.47120 * 149.99853 * 3 2 1 7 7 C 1.37881 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99848 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47060 * 184.03764 * 9 7 2 11 11 C 1.46906 * 111.00196 * 199.75626 * 10 9 7 12 12 C 1.50703 * 109.47100 * 162.20026 * 11 10 9 13 13 C 1.38233 * 119.99987 * 269.72717 * 12 11 10 14 14 C 1.38239 * 119.99751 * 179.76579 * 13 12 11 15 15 C 1.38240 * 119.99716 * 0.51237 * 14 13 12 16 16 C 1.38235 * 119.99842 * 359.73979 * 15 14 13 17 17 C 1.38229 * 119.99527 * 90.00133 * 12 11 10 18 18 C 1.46906 * 111.00151 * 75.80624 * 10 9 7 19 19 H 1.08989 * 109.47289 * 167.19363 * 18 10 9 20 20 C 1.53001 * 109.46724 * 47.19052 * 18 10 9 21 21 O 1.42903 * 109.47072 * 59.97073 * 20 18 10 22 22 C 1.53000 * 109.46695 * 287.19826 * 18 10 9 23 23 C 1.52997 * 117.52049 * 113.75657 * 22 18 10 24 24 C 1.53003 * 60.00134 * 107.47823 * 23 22 18 25 25 H 0.96999 * 120.00186 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47201 * 64.04361 * 9 7 2 27 27 H 1.08997 * 109.47320 * 304.04387 * 9 7 2 28 28 H 1.09000 * 109.47227 * 282.20466 * 11 10 9 29 29 H 1.09006 * 109.46921 * 42.20449 * 11 10 9 30 30 H 1.08001 * 120.00342 * 0.02562 * 13 12 11 31 31 H 1.07994 * 119.99901 * 180.23569 * 14 13 12 32 32 H 1.07994 * 119.99757 * 179.72582 * 15 14 13 33 33 H 1.08000 * 119.99431 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.00539 * 0.02562 * 17 12 11 35 35 H 1.09002 * 109.46337 * 179.97438 * 20 18 10 36 36 H 1.09001 * 109.47502 * 299.97003 * 20 18 10 37 37 H 0.96699 * 113.99836 * 179.97438 * 21 20 18 38 38 H 1.09001 * 115.54992 * 328.04682 * 22 18 10 39 39 H 1.08996 * 117.49690 * 214.96626 * 23 22 18 40 40 H 1.08998 * 117.49920 * 359.97438 * 23 22 18 41 41 H 1.08999 * 117.49649 * 252.51015 * 24 23 22 42 42 H 1.08996 * 117.50062 * 107.48971 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2028 -3.6139 0.0964 11 6 1.5918 -4.8691 -0.3615 12 6 2.6739 -5.8731 -0.6649 13 6 3.2114 -5.9469 -1.9363 14 6 4.2074 -6.8646 -2.2134 15 6 4.6584 -7.7157 -1.2217 16 6 4.1171 -7.6453 0.0483 17 6 3.1249 -6.7240 0.3267 18 6 2.7186 -3.7483 1.4653 19 1 3.2354 -4.7025 1.5668 20 6 1.5548 -3.6906 2.4568 21 8 0.6432 -4.7567 2.1838 22 6 3.6942 -2.6063 1.7570 23 6 3.2862 -1.5815 2.8172 24 6 4.3868 -2.6000 3.1212 25 1 -0.4850 0.8400 0.0004 26 1 0.6795 -2.5887 -0.9244 27 1 0.5715 -2.5263 0.8512 28 1 0.9401 -5.2618 0.4190 29 1 1.0074 -4.6813 -1.2623 30 1 2.8562 -5.2848 -2.7121 31 1 4.6300 -6.9198 -3.2057 32 1 5.4334 -8.4356 -1.4393 33 1 4.4692 -8.3104 0.8229 34 1 2.7015 -6.6696 1.3188 35 1 1.9376 -3.7907 3.4724 36 1 1.0383 -2.7360 2.3557 37 1 -0.1211 -4.7819 2.7758 38 1 4.2648 -2.2454 0.9012 39 1 3.5884 -0.5463 2.6590 40 1 2.3224 -1.7204 3.3069 41 1 4.1471 -3.4091 3.8111 42 1 5.4129 -2.2348 3.1630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299712728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:00 Heat of formation + Delta-G solvation = 21.057067 kcal Electronic energy + Delta-G solvation = -22310.606027 eV Core-core repulsion = 19257.045361 eV Total energy + Delta-G solvation = -3053.560666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.41352 -38.30177 -35.76131 -34.87921 -32.63419 -31.05809 -30.55599 -28.17521 -26.98937 -24.41690 -23.70940 -22.19924 -21.71098 -21.29245 -20.34289 -18.30908 -17.25342 -16.57212 -16.05872 -15.64334 -14.98197 -14.74003 -14.57903 -14.45404 -13.77966 -13.66292 -13.08324 -13.06830 -12.68332 -12.38227 -12.08371 -12.02577 -11.37226 -11.28821 -11.04608 -10.90633 -10.84339 -10.77564 -10.51208 -10.39306 -10.34559 -9.86382 -9.59085 -9.40871 -9.12881 -8.84727 -8.54804 -8.38558 -8.28581 -7.04632 -5.95649 -3.93348 1.73176 1.75434 3.32600 3.39741 3.41852 4.11812 4.45302 4.49301 4.63913 5.06456 5.21590 5.23537 5.33340 5.38786 5.47612 5.55122 5.63235 5.70249 5.80647 5.88992 5.92145 5.99416 6.03091 6.13010 6.15967 6.33643 6.38427 6.47042 6.57021 6.63841 6.74528 6.77599 6.80618 6.82482 7.00423 7.14232 7.34733 7.37931 7.50307 7.92775 8.00670 8.20315 8.28648 8.63563 9.13324 9.68554 11.14876 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.006051 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.575746 B = 4626.573346 C = 4959.541534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.054 3.946 3 Si 0.887 3.113 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.487 4.487 8 H 0.068 0.932 9 C 0.186 3.814 10 N -0.518 5.518 11 C 0.072 3.928 12 C -0.053 4.053 13 C -0.104 4.104 14 C -0.125 4.125 15 C -0.135 4.135 16 C -0.127 4.127 17 C -0.114 4.114 18 C 0.128 3.872 19 H 0.074 0.926 20 C 0.035 3.965 21 O -0.567 6.567 22 C -0.098 4.098 23 C -0.160 4.160 24 C -0.208 4.208 25 H 0.258 0.742 26 H 0.020 0.980 27 H 0.010 0.990 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.364 0.636 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 -11.611 3.459 13.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.146 4.146 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.526 4.526 8 H 0.086 0.914 9 C 0.062 3.938 10 N -0.241 5.241 11 C -0.055 4.055 12 C -0.054 4.054 13 C -0.122 4.122 14 C -0.143 4.143 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.133 4.133 18 C 0.019 3.981 19 H 0.092 0.908 20 C -0.044 4.044 21 O -0.373 6.373 22 C -0.117 4.117 23 C -0.197 4.197 24 C -0.246 4.246 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.027 0.973 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.050 0.950 36 H 0.095 0.905 37 H 0.211 0.789 38 H 0.132 0.868 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.085 -11.484 2.663 13.266 hybrid contribution -0.614 1.112 0.969 1.598 sum 5.472 -10.371 3.632 12.276 Atomic orbital electron populations 1.69953 1.05927 1.26343 1.52185 1.24916 0.94677 0.98823 0.96138 0.86680 0.79841 0.83922 0.78037 1.20919 1.21580 1.19881 1.21282 0.93720 0.89489 1.48111 0.91423 1.19907 0.90150 0.87298 0.96469 1.62242 1.39038 1.03231 1.19607 1.21416 0.93267 0.89804 1.01043 1.20085 0.97050 0.95234 0.93031 1.21100 0.96435 0.97751 0.96944 1.21081 0.97754 0.96561 0.98930 1.20997 1.00597 0.99993 0.93719 1.21044 0.97651 0.99165 0.96632 1.21113 0.97352 0.95725 0.99067 1.21037 0.92377 0.96939 0.87758 0.90819 1.23332 0.92308 0.91013 0.97735 1.86452 1.37756 1.52991 1.60066 1.22006 0.99850 0.97966 0.91856 1.22845 0.97903 0.95671 1.03255 1.23129 0.97624 1.02970 1.00853 0.93244 0.96182 0.97257 0.90424 0.91405 0.86183 0.86728 0.86944 0.86863 0.86288 0.95033 0.90538 0.78910 0.86769 0.89432 0.89241 0.90022 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.49 -12.83 7.20 -34.44 -0.25 -13.08 16 8 H 0.07 1.78 5.52 -52.49 -0.29 1.49 16 9 C 0.19 4.62 4.43 -4.98 -0.02 4.60 16 10 N -0.52 -10.89 4.35 -229.51 -1.00 -11.89 16 11 C 0.07 1.36 4.99 -4.97 -0.02 1.33 16 12 C -0.05 -0.90 5.13 -104.63 -0.54 -1.44 16 13 C -0.10 -1.65 9.70 -39.58 -0.38 -2.04 16 14 C -0.13 -1.74 10.05 -39.58 -0.40 -2.13 16 15 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 16 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 17 C -0.11 -1.76 8.19 -39.59 -0.32 -2.08 16 18 C 0.13 2.42 2.44 -67.71 -0.16 2.26 16 19 H 0.07 1.35 5.43 -51.94 -0.28 1.07 16 20 C 0.03 0.61 4.34 37.16 0.16 0.77 16 21 O -0.57 -9.24 10.43 -35.23 -0.37 -9.61 16 22 C -0.10 -1.86 3.90 -90.62 -0.35 -2.21 16 23 C -0.16 -2.93 8.71 -26.73 -0.23 -3.16 16 24 C -0.21 -3.28 9.92 -26.73 -0.27 -3.55 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.02 0.55 7.62 -51.93 -0.40 0.15 16 27 H 0.01 0.25 5.22 -51.93 -0.27 -0.02 16 28 H 0.08 1.47 4.76 -51.93 -0.25 1.22 16 29 H 0.07 1.32 7.58 -51.93 -0.39 0.92 16 30 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.81 7.49 -52.49 -0.39 1.41 16 35 H 0.03 0.50 7.12 -51.93 -0.37 0.13 16 36 H 0.08 1.59 4.95 -51.93 -0.26 1.33 16 37 H 0.36 4.43 9.12 45.56 0.42 4.85 16 38 H 0.11 2.38 6.80 -51.93 -0.35 2.03 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.09 1.64 5.83 -51.93 -0.30 1.34 16 41 H 0.08 1.18 7.76 -51.93 -0.40 0.78 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -29.08 325.51 -9.65 -38.73 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.21 Total: 10.57 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -3.69 Total: -23.63 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.26 Total: -37.20 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.37 Total: -9.61 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.08 -9.65 -38.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299712728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.785 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds