Wall clock time and date at job start Mon Mar 30 2020 01:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 120.00158 * 2 1 4 4 H 1.48500 * 109.47280 * 270.00495 * 3 2 1 5 5 H 1.48505 * 109.46466 * 30.00240 * 3 2 1 6 6 H 1.48490 * 109.47120 * 149.99853 * 3 2 1 7 7 C 1.37881 * 120.00169 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00039 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99848 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47060 * 184.03764 * 9 7 2 11 11 C 1.46906 * 111.00196 * 199.75626 * 10 9 7 12 12 C 1.50703 * 109.47100 * 162.20026 * 11 10 9 13 13 C 1.38233 * 119.99987 * 269.72717 * 12 11 10 14 14 C 1.38239 * 119.99751 * 179.76579 * 13 12 11 15 15 C 1.38240 * 119.99716 * 0.51237 * 14 13 12 16 16 C 1.38235 * 119.99842 * 359.73979 * 15 14 13 17 17 C 1.38229 * 119.99527 * 90.00133 * 12 11 10 18 18 C 1.46906 * 111.00151 * 75.80624 * 10 9 7 19 19 H 1.08989 * 109.47289 * 167.19363 * 18 10 9 20 20 C 1.53001 * 109.46724 * 47.19052 * 18 10 9 21 21 O 1.42903 * 109.47072 * 59.97073 * 20 18 10 22 22 C 1.53000 * 109.46695 * 287.19826 * 18 10 9 23 23 C 1.52997 * 117.52049 * 113.75657 * 22 18 10 24 24 C 1.53003 * 60.00134 * 107.47823 * 23 22 18 25 25 H 0.96999 * 120.00186 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47201 * 64.04361 * 9 7 2 27 27 H 1.08997 * 109.47320 * 304.04387 * 9 7 2 28 28 H 1.09000 * 109.47227 * 282.20466 * 11 10 9 29 29 H 1.09006 * 109.46921 * 42.20449 * 11 10 9 30 30 H 1.08001 * 120.00342 * 0.02562 * 13 12 11 31 31 H 1.07994 * 119.99901 * 180.23569 * 14 13 12 32 32 H 1.07994 * 119.99757 * 179.72582 * 15 14 13 33 33 H 1.08000 * 119.99431 * 179.97438 * 16 15 14 34 34 H 1.08000 * 120.00539 * 0.02562 * 17 12 11 35 35 H 1.09002 * 109.46337 * 179.97438 * 20 18 10 36 36 H 1.09001 * 109.47502 * 299.97003 * 20 18 10 37 37 H 0.96699 * 113.99836 * 179.97438 * 21 20 18 38 38 H 1.09001 * 115.54992 * 328.04682 * 22 18 10 39 39 H 1.08996 * 117.49690 * 214.96626 * 23 22 18 40 40 H 1.08998 * 117.49920 * 359.97438 * 23 22 18 41 41 H 1.08999 * 117.49649 * 252.51015 * 24 23 22 42 42 H 1.08996 * 117.50062 * 107.48971 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2028 -3.6139 0.0964 11 6 1.5918 -4.8691 -0.3615 12 6 2.6739 -5.8731 -0.6649 13 6 3.2114 -5.9469 -1.9363 14 6 4.2074 -6.8646 -2.2134 15 6 4.6584 -7.7157 -1.2217 16 6 4.1171 -7.6453 0.0483 17 6 3.1249 -6.7240 0.3267 18 6 2.7186 -3.7483 1.4653 19 1 3.2354 -4.7025 1.5668 20 6 1.5548 -3.6906 2.4568 21 8 0.6432 -4.7567 2.1838 22 6 3.6942 -2.6063 1.7570 23 6 3.2862 -1.5815 2.8172 24 6 4.3868 -2.6000 3.1212 25 1 -0.4850 0.8400 0.0004 26 1 0.6795 -2.5887 -0.9244 27 1 0.5715 -2.5263 0.8512 28 1 0.9401 -5.2618 0.4190 29 1 1.0074 -4.6813 -1.2623 30 1 2.8562 -5.2848 -2.7121 31 1 4.6300 -6.9198 -3.2057 32 1 5.4334 -8.4356 -1.4393 33 1 4.4692 -8.3104 0.8229 34 1 2.7015 -6.6696 1.3188 35 1 1.9376 -3.7907 3.4724 36 1 1.0383 -2.7360 2.3557 37 1 -0.1211 -4.7819 2.7758 38 1 4.2648 -2.2454 0.9012 39 1 3.5884 -0.5463 2.6590 40 1 2.3224 -1.7204 3.3069 41 1 4.1471 -3.4091 3.8111 42 1 5.4129 -2.2348 3.1630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299712728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:00 Heat of formation + Delta-G solvation = 2.833421 kcal Electronic energy + Delta-G solvation = -22311.396263 eV Core-core repulsion = 19257.045361 eV Total energy + Delta-G solvation = -3054.350902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82044 -39.56187 -37.14106 -36.41252 -34.62754 -32.43280 -31.68237 -29.80403 -28.70486 -25.88449 -25.45759 -23.33554 -23.12312 -22.87482 -21.68091 -19.84644 -18.66253 -18.32870 -17.42939 -17.20044 -16.69057 -16.15356 -15.95885 -15.80011 -15.37455 -15.06991 -14.57516 -14.21480 -14.16259 -13.85911 -13.69465 -13.31853 -13.11750 -12.90669 -12.71375 -12.52193 -12.45470 -12.17177 -12.13134 -12.00550 -11.67366 -11.48674 -11.19419 -10.97572 -10.78846 -10.47225 -10.37781 -9.67828 -9.52896 -8.73391 -8.07166 -6.11221 0.58250 0.62585 1.40040 1.41848 1.50951 2.45075 2.93050 3.07698 3.25289 3.29785 3.58762 4.01223 4.04782 4.16810 4.21641 4.28510 4.33337 4.38759 4.40246 4.49971 4.53845 4.60930 4.79324 4.85628 4.87467 4.91185 5.03098 5.12120 5.21399 5.29183 5.32032 5.37504 5.38097 5.42932 5.56292 5.69726 5.71771 5.83414 5.93132 6.22330 6.26268 6.53007 6.75264 6.86389 7.02766 7.54887 9.02853 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.006051 C = 0.005644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.575746 B = 4626.573346 C = 4959.541534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.006 3.994 3 Si 0.945 3.055 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.483 4.483 8 H 0.067 0.933 9 C 0.204 3.796 10 N -0.525 5.525 11 C 0.077 3.923 12 C -0.075 4.075 13 C -0.124 4.124 14 C -0.126 4.126 15 C -0.129 4.129 16 C -0.124 4.124 17 C -0.122 4.122 18 C 0.130 3.870 19 H 0.085 0.915 20 C 0.048 3.952 21 O -0.574 6.574 22 C -0.122 4.122 23 C -0.174 4.174 24 C -0.167 4.167 25 H 0.257 0.743 26 H -0.018 1.018 27 H -0.006 1.006 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.384 0.616 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.923 -13.299 4.682 16.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.772 3.228 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.078 3.922 10 N -0.248 5.248 11 C -0.050 4.050 12 C -0.075 4.075 13 C -0.143 4.143 14 C -0.144 4.144 15 C -0.147 4.147 16 C -0.142 4.142 17 C -0.140 4.140 18 C 0.021 3.979 19 H 0.103 0.897 20 C -0.031 4.031 21 O -0.383 6.383 22 C -0.141 4.141 23 C -0.211 4.211 24 C -0.204 4.204 25 H 0.066 0.934 26 H 0.000 1.000 27 H 0.012 0.988 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.127 0.873 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.233 0.767 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.123 0.877 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.597 -13.190 3.897 16.219 hybrid contribution -1.382 1.524 0.564 2.133 sum 7.215 -11.665 4.461 14.424 Atomic orbital electron populations 1.70082 1.07428 1.26999 1.53645 1.25638 0.95330 1.02042 0.96049 0.85738 0.79092 0.80034 0.77932 1.20903 1.21396 1.18600 1.21481 0.93644 0.90183 1.46846 0.91509 1.19537 0.90165 0.88694 0.93794 1.62160 1.37828 1.03165 1.21691 1.21332 0.94188 0.89519 0.99963 1.19918 0.97516 0.95845 0.94236 1.21166 0.97764 0.98884 0.96504 1.21374 0.96740 0.95735 1.00516 1.21429 1.00535 0.99681 0.93043 1.21401 0.96445 0.98556 0.97761 1.21161 0.98126 0.96103 0.98624 1.21072 0.92759 0.97451 0.86618 0.89686 1.23043 0.91743 0.89633 0.98671 1.86390 1.38584 1.52149 1.61164 1.21915 1.00935 0.98619 0.92585 1.22792 0.99087 0.95409 1.03822 1.23186 0.97575 1.01623 0.97998 0.93371 0.99996 0.98838 0.90487 0.93492 0.87296 0.84376 0.83521 0.83841 0.86220 0.92332 0.94130 0.76676 0.89254 0.90792 0.89640 0.87727 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.05 13.29 21.45 0.28 -55.77 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.48 -26.31 7.20 25.60 0.18 -26.13 16 8 H 0.07 3.61 5.52 -2.91 -0.02 3.59 16 9 C 0.20 10.67 4.43 85.56 0.38 11.05 16 10 N -0.53 -22.89 4.35 -880.04 -3.83 -26.72 16 11 C 0.08 3.04 4.99 85.56 0.43 3.46 16 12 C -0.07 -2.53 5.13 -19.87 -0.10 -2.64 16 13 C -0.12 -3.97 9.70 22.27 0.22 -3.76 16 14 C -0.13 -3.21 10.05 22.27 0.22 -2.99 16 15 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 16 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 17 C -0.12 -3.55 8.19 22.27 0.18 -3.37 16 18 C 0.13 4.87 2.44 44.91 0.11 4.98 16 19 H 0.09 3.00 5.43 -2.39 -0.01 2.99 16 20 C 0.05 1.67 4.34 71.98 0.31 1.98 16 21 O -0.57 -18.53 10.43 -148.98 -1.55 -20.08 16 22 C -0.12 -4.54 3.90 -10.79 -0.04 -4.58 16 23 C -0.17 -6.26 8.71 30.59 0.27 -6.00 16 24 C -0.17 -4.78 9.92 30.60 0.30 -4.47 16 25 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 26 H -0.02 -1.06 7.62 -2.39 -0.02 -1.08 16 27 H -0.01 -0.33 5.22 -2.39 -0.01 -0.34 16 28 H 0.08 3.01 4.76 -2.39 -0.01 3.00 16 29 H 0.05 1.97 7.58 -2.38 -0.02 1.95 16 30 H 0.11 3.59 8.06 -2.91 -0.02 3.56 16 31 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.12 3.42 7.49 -2.91 -0.02 3.39 16 35 H 0.06 1.73 7.12 -2.39 -0.02 1.71 16 36 H 0.04 1.73 4.95 -2.39 -0.01 1.72 16 37 H 0.38 9.05 9.12 -74.06 -0.68 8.37 16 38 H 0.09 3.77 6.80 -2.39 -0.02 3.75 16 39 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 40 H 0.09 3.12 5.83 -2.39 -0.01 3.11 16 41 H 0.10 2.56 7.76 -2.39 -0.02 2.55 16 42 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -64.81 325.51 0.65 -64.16 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 0.35 Total: 29.10 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 3.37 Total: -37.03 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -3.55 Total: -82.49 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -1.55 Total: -20.08 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -64.81 0.65 -64.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299712728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.989 kcal (2) G-P(sol) polarization free energy of solvation -64.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds