Wall clock time and date at job start Mon Mar 30 2020 01:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99995 * 2 1 4 4 H 1.48503 * 109.46933 * 269.99929 * 3 2 1 5 5 H 1.48499 * 109.47299 * 29.99719 * 3 2 1 6 6 H 1.48497 * 109.47280 * 150.00167 * 3 2 1 7 7 C 1.38814 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00056 * 140.60538 * 7 2 1 9 9 N 1.36942 * 119.99939 * 320.87541 * 7 2 1 10 10 C 1.46495 * 120.00146 * 215.99019 * 9 7 2 11 11 C 1.50694 * 109.47498 * 89.99946 * 10 9 7 12 12 C 1.38237 * 120.00127 * 269.73035 * 11 10 9 13 13 C 1.38233 * 119.99537 * 179.76360 * 12 11 10 14 14 C 1.38231 * 120.00665 * 0.50482 * 13 12 11 15 15 C 1.38239 * 119.99487 * 359.74393 * 14 13 12 16 16 C 1.38233 * 119.99869 * 89.99632 * 11 10 9 17 17 C 1.46507 * 119.99561 * 35.98903 * 9 7 2 18 18 C 1.53002 * 109.46739 * 83.04604 * 17 9 7 19 19 O 1.42894 * 110.01986 * 66.07633 * 18 17 9 20 20 C 1.54261 * 110.03463 * 304.67974 * 18 17 9 21 21 C 1.54965 * 104.16196 * 217.13958 * 20 18 17 22 22 C 1.54888 * 102.77745 * 37.88951 * 21 20 18 23 23 C 1.53877 * 110.02641 * 187.46404 * 18 17 9 24 24 H 0.96999 * 120.00075 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46710 * 210.00615 * 10 9 7 26 26 H 1.09000 * 109.46937 * 329.99891 * 10 9 7 27 27 H 1.08002 * 119.99838 * 359.97438 * 12 11 10 28 28 H 1.08006 * 119.99351 * 180.23262 * 13 12 11 29 29 H 1.08001 * 120.00441 * 179.72691 * 14 13 12 30 30 H 1.07997 * 119.99559 * 179.97438 * 15 14 13 31 31 H 1.08002 * 120.00374 * 0.02562 * 16 11 10 32 32 H 1.08998 * 109.46394 * 203.04192 * 17 9 7 33 33 H 1.08996 * 109.47427 * 323.04542 * 17 9 7 34 34 H 0.96705 * 113.99904 * 300.70249 * 19 18 17 35 35 H 1.08998 * 110.48653 * 335.78762 * 20 18 17 36 36 H 1.08999 * 110.48525 * 98.42938 * 20 18 17 37 37 H 1.09002 * 110.71724 * 279.57705 * 21 20 18 38 38 H 1.09001 * 110.76440 * 156.22723 * 21 20 18 39 39 H 1.08992 * 110.48661 * 203.40590 * 22 21 20 40 40 H 1.09000 * 110.48666 * 80.76084 * 22 21 20 41 41 H 1.09003 * 110.03446 * 238.56528 * 23 18 17 42 42 H 1.08993 * 110.03633 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 2.9062 -1.3086 -0.5930 9 7 1.5559 -2.2548 0.7494 10 6 2.5095 -3.1533 1.4046 11 6 2.8228 -2.6340 2.7841 12 6 3.8786 -1.7615 2.9709 13 6 4.1629 -1.2814 4.2356 14 6 3.3979 -1.6818 5.3151 15 6 2.3453 -2.5583 5.1290 16 6 2.0578 -3.0344 3.8635 17 6 0.1159 -2.4823 0.8952 18 6 -0.4035 -3.2561 -0.3182 19 8 0.1585 -4.5698 -0.3379 20 6 -0.0416 -2.5070 -1.6172 21 6 -1.2711 -2.7240 -2.5352 22 6 -2.4581 -2.6390 -1.5438 23 6 -1.9392 -3.3405 -0.2714 24 1 -0.4850 0.8400 0.0004 25 1 2.0755 -4.1502 1.4814 26 1 3.4266 -3.2006 0.8172 27 1 4.4793 -1.4523 2.1282 28 1 4.9855 -0.5967 4.3810 29 1 3.6228 -1.3101 6.3039 30 1 1.7479 -2.8715 5.9725 31 1 1.2358 -3.7198 3.7183 32 1 -0.0707 -3.0591 1.8011 33 1 -0.3984 -1.5237 0.9622 34 1 1.1246 -4.5837 -0.3780 35 1 0.1026 -1.4452 -1.4177 36 1 0.8529 -2.9362 -2.0685 37 1 -1.2315 -3.7058 -3.0071 38 1 -1.3372 -1.9361 -3.2854 39 1 -3.3261 -3.1643 -1.9420 40 1 -2.7046 -1.5986 -1.3321 41 1 -2.2559 -4.3835 -0.2647 42 1 -2.3144 -2.8298 0.6154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305034886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:41 Heat of formation + Delta-G solvation = -6.636005 kcal Electronic energy + Delta-G solvation = -22503.595552 eV Core-core repulsion = 19448.834025 eV Total energy + Delta-G solvation = -3054.761527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.81915 -38.18495 -35.09952 -33.88429 -32.19361 -30.32595 -30.21404 -28.26121 -27.47706 -25.59044 -24.37380 -21.96412 -21.64437 -20.24221 -19.88478 -18.77383 -17.05277 -16.27302 -15.26458 -15.07662 -14.74379 -14.51417 -14.43585 -14.24773 -13.58994 -13.18377 -12.84674 -12.79220 -12.46796 -12.02739 -11.91229 -11.72686 -11.57441 -11.34917 -11.01856 -10.69152 -10.59624 -10.44403 -10.36307 -10.25877 -10.06857 -10.02322 -9.91112 -9.60097 -9.26778 -8.84453 -8.33942 -8.12555 -7.99863 -6.82684 -6.12610 -3.29563 1.97375 1.99542 3.31299 3.44397 3.50635 4.30660 4.47708 5.02213 5.17672 5.39948 5.42623 5.47937 5.56228 5.59478 5.74990 5.75970 5.86572 6.02861 6.13009 6.26384 6.31488 6.37479 6.44334 6.46304 6.56262 6.60499 6.64129 6.67094 6.74317 6.75290 6.91146 7.02210 7.06044 7.14293 7.14788 7.32857 7.38021 7.58715 7.62386 7.94614 8.03992 8.35489 8.75013 9.10832 9.68991 10.28843 10.87067 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.007666 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.317950 B = 3651.606496 C = 4767.692231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.044 3.956 3 Si 0.851 3.149 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.275 4.275 8 H 0.071 0.929 9 N -0.587 5.587 10 C 0.181 3.819 11 C -0.075 4.075 12 C -0.101 4.101 13 C -0.127 4.127 14 C -0.141 4.141 15 C -0.128 4.128 16 C -0.116 4.116 17 C 0.107 3.893 18 C 0.119 3.881 19 O -0.582 6.582 20 C -0.137 4.137 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.103 4.103 24 H 0.260 0.740 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.015 0.985 33 H 0.132 0.868 34 H 0.366 0.634 35 H 0.141 0.859 36 H 0.040 0.960 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.055 0.945 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.146 -4.411 3.429 5.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.156 4.156 3 Si 0.677 3.323 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.402 4.402 8 H 0.089 0.911 9 N -0.307 5.307 10 C 0.054 3.946 11 C -0.078 4.078 12 C -0.120 4.120 13 C -0.145 4.145 14 C -0.160 4.160 15 C -0.146 4.146 16 C -0.135 4.135 17 C -0.018 4.018 18 C 0.078 3.922 19 O -0.389 6.389 20 C -0.174 4.174 21 C -0.163 4.163 22 C -0.151 4.151 23 C -0.141 4.141 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.135 0.865 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.034 0.966 33 H 0.149 0.851 34 H 0.212 0.788 35 H 0.159 0.841 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.337 -4.453 3.407 5.617 hybrid contribution 1.009 1.220 0.087 1.585 sum 1.346 -3.233 3.494 4.947 Atomic orbital electron populations 1.69747 1.06079 1.26088 1.47067 1.25315 0.94722 0.97586 0.98000 0.87115 0.81674 0.85682 0.77788 1.21566 1.21488 1.20355 1.18794 1.10312 0.88354 1.22742 0.91090 1.43898 1.00149 1.31978 1.54690 1.19983 0.94059 0.92500 0.88045 1.21063 0.93235 0.96254 0.97274 1.21017 0.97720 0.96892 0.96327 1.21058 0.99913 1.00198 0.93370 1.20911 0.97139 0.99706 0.98210 1.20994 0.97937 0.98655 0.97007 1.20992 0.99375 1.00688 0.92442 1.22727 0.85146 1.01996 0.91899 1.22455 0.91114 0.81022 0.97626 1.86336 1.24574 1.30539 1.97418 1.23234 0.94073 1.07064 0.93039 1.22498 0.97020 0.99140 0.97596 1.22223 0.96937 1.00374 0.95594 1.21979 0.94729 0.99494 0.97923 0.92864 0.93321 0.92850 0.86478 0.87178 0.87308 0.87212 0.86994 0.96614 0.85132 0.78758 0.84100 0.94134 0.93625 0.93126 0.93473 0.91421 0.92586 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.08 8.44 55.49 0.47 -20.61 16 2 C 0.04 1.10 4.83 -17.43 -0.08 1.02 16 3 Si 0.85 19.80 29.69 -169.99 -5.05 14.75 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.27 -6.62 7.52 -15.06 -0.11 -6.73 16 8 H 0.07 1.74 8.05 -52.49 -0.42 1.32 16 9 N -0.59 -12.89 2.19 -174.61 -0.38 -13.27 16 10 C 0.18 3.45 5.15 -5.20 -0.03 3.43 16 11 C -0.07 -1.42 5.46 -104.63 -0.57 -1.99 16 12 C -0.10 -1.86 9.70 -39.58 -0.38 -2.24 16 13 C -0.13 -2.12 10.05 -39.59 -0.40 -2.52 16 14 C -0.14 -2.22 10.05 -39.58 -0.40 -2.61 16 15 C -0.13 -2.06 10.05 -39.58 -0.40 -2.45 16 16 C -0.12 -2.06 9.70 -39.58 -0.38 -2.44 16 17 C 0.11 2.38 4.46 -4.04 -0.02 2.36 16 18 C 0.12 2.47 1.13 -89.50 -0.10 2.37 16 19 O -0.58 -11.86 12.87 -35.23 -0.45 -12.32 16 20 C -0.14 -2.93 4.85 -25.03 -0.12 -3.05 16 21 C -0.12 -2.36 6.91 -24.70 -0.17 -2.53 16 22 C -0.11 -2.04 6.83 -25.07 -0.17 -2.21 16 23 C -0.10 -1.97 6.27 -25.61 -0.16 -2.13 16 24 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 25 H 0.05 0.87 7.23 -51.93 -0.38 0.49 16 26 H 0.05 0.98 7.98 -51.93 -0.41 0.57 16 27 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 28 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 29 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.11 1.90 8.06 -52.49 -0.42 1.47 16 32 H 0.02 0.34 8.02 -51.93 -0.42 -0.07 16 33 H 0.13 3.24 4.89 -51.93 -0.25 2.99 16 34 H 0.37 6.91 7.37 45.56 0.34 7.25 16 35 H 0.14 3.38 3.77 -51.93 -0.20 3.19 16 36 H 0.04 0.89 8.05 -51.93 -0.42 0.47 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.04 7.96 -51.93 -0.41 0.63 16 42 H 0.06 1.20 7.67 -51.93 -0.40 0.80 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -25.32 329.60 -9.86 -35.18 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.91 Total: 13.03 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -3.50 Total: -21.72 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: 0.09 Total: -33.88 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.45 Total: -12.32 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.05 Total: 14.75 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -25.32 -9.86 -35.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305034886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.539 kcal (2) G-P(sol) polarization free energy of solvation -25.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds