Wall clock time and date at job start Mon Mar 30 2020 01:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99995 * 2 1 4 4 H 1.48503 * 109.46933 * 269.99929 * 3 2 1 5 5 H 1.48499 * 109.47299 * 29.99719 * 3 2 1 6 6 H 1.48497 * 109.47280 * 150.00167 * 3 2 1 7 7 C 1.38814 * 120.00152 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00056 * 140.60538 * 7 2 1 9 9 N 1.36942 * 119.99939 * 320.87541 * 7 2 1 10 10 C 1.46495 * 120.00146 * 215.99019 * 9 7 2 11 11 C 1.50694 * 109.47498 * 89.99946 * 10 9 7 12 12 C 1.38237 * 120.00127 * 269.73035 * 11 10 9 13 13 C 1.38233 * 119.99537 * 179.76360 * 12 11 10 14 14 C 1.38231 * 120.00665 * 0.50482 * 13 12 11 15 15 C 1.38239 * 119.99487 * 359.74393 * 14 13 12 16 16 C 1.38233 * 119.99869 * 89.99632 * 11 10 9 17 17 C 1.46507 * 119.99561 * 35.98903 * 9 7 2 18 18 C 1.53002 * 109.46739 * 83.04604 * 17 9 7 19 19 O 1.42894 * 110.01986 * 66.07633 * 18 17 9 20 20 C 1.54261 * 110.03463 * 304.67974 * 18 17 9 21 21 C 1.54965 * 104.16196 * 217.13958 * 20 18 17 22 22 C 1.54888 * 102.77745 * 37.88951 * 21 20 18 23 23 C 1.53877 * 110.02641 * 187.46404 * 18 17 9 24 24 H 0.96999 * 120.00075 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46710 * 210.00615 * 10 9 7 26 26 H 1.09000 * 109.46937 * 329.99891 * 10 9 7 27 27 H 1.08002 * 119.99838 * 359.97438 * 12 11 10 28 28 H 1.08006 * 119.99351 * 180.23262 * 13 12 11 29 29 H 1.08001 * 120.00441 * 179.72691 * 14 13 12 30 30 H 1.07997 * 119.99559 * 179.97438 * 15 14 13 31 31 H 1.08002 * 120.00374 * 0.02562 * 16 11 10 32 32 H 1.08998 * 109.46394 * 203.04192 * 17 9 7 33 33 H 1.08996 * 109.47427 * 323.04542 * 17 9 7 34 34 H 0.96705 * 113.99904 * 300.70249 * 19 18 17 35 35 H 1.08998 * 110.48653 * 335.78762 * 20 18 17 36 36 H 1.08999 * 110.48525 * 98.42938 * 20 18 17 37 37 H 1.09002 * 110.71724 * 279.57705 * 21 20 18 38 38 H 1.09001 * 110.76440 * 156.22723 * 21 20 18 39 39 H 1.08992 * 110.48661 * 203.40590 * 22 21 20 40 40 H 1.09000 * 110.48666 * 80.76084 * 22 21 20 41 41 H 1.09003 * 110.03446 * 238.56528 * 23 18 17 42 42 H 1.08993 * 110.03633 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 2.9062 -1.3086 -0.5930 9 7 1.5559 -2.2548 0.7494 10 6 2.5095 -3.1533 1.4046 11 6 2.8228 -2.6340 2.7841 12 6 3.8786 -1.7615 2.9709 13 6 4.1629 -1.2814 4.2356 14 6 3.3979 -1.6818 5.3151 15 6 2.3453 -2.5583 5.1290 16 6 2.0578 -3.0344 3.8635 17 6 0.1159 -2.4823 0.8952 18 6 -0.4035 -3.2561 -0.3182 19 8 0.1585 -4.5698 -0.3379 20 6 -0.0416 -2.5070 -1.6172 21 6 -1.2711 -2.7240 -2.5352 22 6 -2.4581 -2.6390 -1.5438 23 6 -1.9392 -3.3405 -0.2714 24 1 -0.4850 0.8400 0.0004 25 1 2.0755 -4.1502 1.4814 26 1 3.4266 -3.2006 0.8172 27 1 4.4793 -1.4523 2.1282 28 1 4.9855 -0.5967 4.3810 29 1 3.6228 -1.3101 6.3039 30 1 1.7479 -2.8715 5.9725 31 1 1.2358 -3.7198 3.7183 32 1 -0.0707 -3.0591 1.8011 33 1 -0.3984 -1.5237 0.9622 34 1 1.1246 -4.5837 -0.3780 35 1 0.1026 -1.4452 -1.4177 36 1 0.8529 -2.9362 -2.0685 37 1 -1.2315 -3.7058 -3.0071 38 1 -1.3372 -1.9361 -3.2854 39 1 -3.3261 -3.1643 -1.9420 40 1 -2.7046 -1.5986 -1.3321 41 1 -2.2559 -4.3835 -0.2647 42 1 -2.3144 -2.8298 0.6154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305034886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:40 Heat of formation + Delta-G solvation = -18.127255 kcal Electronic energy + Delta-G solvation = -22504.093850 eV Core-core repulsion = 19448.834025 eV Total energy + Delta-G solvation = -3055.259825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.32194 -39.65853 -36.74773 -35.49192 -33.86809 -31.81087 -31.61925 -29.87167 -29.06178 -27.27315 -25.98659 -23.39271 -23.16847 -21.73383 -21.41107 -20.39160 -18.85776 -17.62556 -16.89015 -16.78709 -16.32748 -16.05514 -15.86159 -15.73685 -15.35596 -14.81899 -14.35322 -14.14541 -13.96871 -13.56553 -13.51952 -13.32770 -13.18257 -13.00546 -12.64011 -12.47655 -12.24914 -11.96570 -11.86264 -11.77763 -11.69952 -11.61190 -11.54461 -11.19217 -10.98584 -10.52260 -9.86729 -9.66648 -9.48512 -8.58445 -7.99651 -5.15701 0.63871 0.66075 1.42585 1.53613 1.60204 2.51449 2.98760 3.16516 3.61288 3.82364 4.06123 4.11403 4.17389 4.21102 4.29397 4.36077 4.40614 4.60295 4.70692 4.78947 4.81862 4.88758 4.93836 4.98717 5.04013 5.07302 5.10470 5.25122 5.30877 5.32067 5.37239 5.45997 5.60437 5.63028 5.71718 5.73510 5.77191 5.98684 6.06874 6.25175 6.30492 6.53772 7.10981 7.26603 7.89598 8.46174 8.98603 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.007666 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.317950 B = 3651.606496 C = 4767.692231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.013 3.987 3 Si 0.890 3.110 4 H -0.292 1.292 5 H -0.298 1.298 6 H -0.284 1.284 7 C -0.269 4.269 8 H 0.061 0.939 9 N -0.594 5.594 10 C 0.184 3.816 11 C -0.095 4.095 12 C -0.121 4.121 13 C -0.134 4.134 14 C -0.138 4.138 15 C -0.129 4.129 16 C -0.129 4.129 17 C 0.114 3.886 18 C 0.121 3.879 19 O -0.583 6.583 20 C -0.137 4.137 21 C -0.121 4.121 22 C -0.107 4.107 23 C -0.103 4.103 24 H 0.256 0.744 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.115 0.885 32 H 0.013 0.987 33 H 0.109 0.891 34 H 0.370 0.630 35 H 0.118 0.882 36 H 0.026 0.974 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 -4.956 4.513 6.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.186 4.186 3 Si 0.718 3.282 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.210 1.210 7 C -0.397 4.397 8 H 0.079 0.921 9 N -0.315 5.315 10 C 0.058 3.942 11 C -0.098 4.098 12 C -0.140 4.140 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.011 4.011 18 C 0.080 3.920 19 O -0.390 6.390 20 C -0.175 4.175 21 C -0.159 4.159 22 C -0.145 4.145 23 C -0.141 4.141 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.150 0.850 29 H 0.160 0.840 30 H 0.156 0.844 31 H 0.133 0.867 32 H 0.031 0.969 33 H 0.126 0.874 34 H 0.218 0.782 35 H 0.136 0.864 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.073 -5.008 4.499 6.733 hybrid contribution 1.173 1.343 -0.184 1.793 sum 1.247 -3.665 4.315 5.797 Atomic orbital electron populations 1.69856 1.06202 1.25759 1.48080 1.25601 0.95177 0.98732 0.99099 0.86505 0.80469 0.84061 0.77141 1.21913 1.22409 1.21027 1.18765 1.09480 0.88943 1.22527 0.92097 1.43942 1.00513 1.31957 1.55058 1.19987 0.93478 0.92331 0.88412 1.21014 0.94286 0.97190 0.97268 1.21112 0.98081 0.97639 0.97198 1.21369 1.00658 1.00251 0.92880 1.21329 0.96193 0.98700 0.99405 1.21361 0.98121 0.98045 0.97131 1.21144 0.99433 1.01168 0.93053 1.22518 0.85189 1.00924 0.92480 1.22393 0.92243 0.80863 0.96527 1.86324 1.25116 1.30220 1.97341 1.23106 0.94789 1.05486 0.94104 1.22465 0.96086 0.99824 0.97494 1.22186 0.97450 1.00176 0.94674 1.21996 0.93376 1.00147 0.98628 0.93330 0.92306 0.92797 0.87341 0.85043 0.84027 0.84387 0.86737 0.96863 0.87427 0.78226 0.86450 0.95562 0.92684 0.92603 0.90656 0.92223 0.91765 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.12 8.44 21.65 0.18 -42.93 16 2 C 0.01 0.66 4.83 84.86 0.41 1.07 16 3 Si 0.89 41.24 29.69 68.60 2.04 43.28 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.27 -13.14 7.52 84.03 0.63 -12.51 16 8 H 0.06 3.06 8.05 -2.91 -0.02 3.04 16 9 N -0.59 -26.28 2.19 -706.35 -1.55 -27.83 16 10 C 0.18 7.04 5.15 85.63 0.44 7.48 16 11 C -0.09 -3.54 5.46 -19.87 -0.11 -3.65 16 12 C -0.12 -4.43 9.70 22.27 0.22 -4.21 16 13 C -0.13 -4.20 10.05 22.27 0.22 -3.97 16 14 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 15 C -0.13 -3.81 10.05 22.27 0.22 -3.58 16 16 C -0.13 -4.42 9.70 22.27 0.22 -4.21 16 17 C 0.11 5.07 4.46 86.38 0.38 5.45 16 18 C 0.12 4.96 1.13 -10.07 -0.01 4.95 16 19 O -0.58 -23.19 12.87 -148.98 -1.92 -25.11 16 20 C -0.14 -5.86 4.85 31.69 0.15 -5.71 16 21 C -0.12 -4.41 6.91 31.91 0.22 -4.19 16 22 C -0.11 -3.64 6.83 31.67 0.22 -3.43 16 23 C -0.10 -3.80 6.27 31.32 0.20 -3.60 16 24 H 0.26 12.69 8.31 -92.71 -0.77 11.92 16 25 H 0.06 2.09 7.23 -2.39 -0.02 2.07 16 26 H 0.05 2.02 7.98 -2.39 -0.02 2.00 16 27 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.13 3.47 8.06 -2.91 -0.02 3.44 16 29 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.11 3.77 8.06 -2.91 -0.02 3.74 16 32 H 0.01 0.57 8.02 -2.39 -0.02 0.55 16 33 H 0.11 5.40 4.89 -2.39 -0.01 5.39 16 34 H 0.37 13.81 7.37 -74.05 -0.55 13.27 16 35 H 0.12 5.70 3.77 -2.39 -0.01 5.69 16 36 H 0.03 1.15 8.05 -2.39 -0.02 1.13 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 2.24 7.96 -2.39 -0.02 2.22 16 42 H 0.06 2.30 7.67 -2.39 -0.02 2.28 16 Total: -1.00 -53.05 329.60 2.84 -50.21 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.45 Total: 36.18 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 3.64 Total: -33.79 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -1.37 Total: -70.76 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -1.92 Total: -25.11 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.04 Total: 43.28 kcal Total: -53.05 2.84 -50.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305034886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.078 kcal (2) G-P(sol) polarization free energy of solvation -53.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds