Wall clock time and date at job start Mon Mar 30 2020 01:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86806 * 119.99851 * 2 1 4 4 H 1.48496 * 109.47220 * 275.41332 * 3 2 1 5 5 H 1.48501 * 109.46875 * 35.41703 * 3 2 1 6 6 H 1.48498 * 109.46849 * 155.41232 * 3 2 1 7 7 C 1.39926 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00171 * 341.73535 * 7 2 1 9 9 C 1.41414 * 119.99873 * 161.72977 * 7 2 1 10 10 C 1.40783 * 120.20883 * 330.19284 * 9 7 2 11 11 C 1.37643 * 119.89592 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.32021 * 359.74889 * 11 10 9 13 13 C 1.39287 * 120.42558 * 0.51103 * 12 11 10 14 14 N 1.39694 * 119.95232 * 179.76710 * 13 12 11 15 15 C 1.46499 * 119.99957 * 359.72191 * 14 13 12 16 16 C 1.52995 * 109.47187 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47266 * 179.97438 * 16 15 14 18 18 C 1.53172 * 109.54150 * 294.55676 * 17 16 15 19 19 C 1.53094 * 109.16423 * 183.14949 * 18 17 16 20 20 O 1.42912 * 109.41455 * 57.60933 * 19 18 17 21 21 C 1.42906 * 114.09222 * 298.84253 * 20 19 18 22 22 C 1.53100 * 109.41713 * 61.15980 * 21 20 19 23 23 C 1.38312 * 120.09674 * 359.48442 * 13 12 11 24 24 H 0.97004 * 120.00061 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.05316 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.84078 * 180.02562 * 11 10 9 27 27 H 1.08007 * 119.78443 * 180.28117 * 12 11 10 28 28 H 0.96996 * 119.99921 * 179.72125 * 14 13 12 29 29 H 1.08998 * 109.46964 * 59.99863 * 15 14 13 30 30 H 1.09002 * 109.46944 * 300.00676 * 15 14 13 31 31 H 1.09002 * 109.47145 * 59.99602 * 16 15 14 32 32 H 1.09000 * 109.46877 * 299.99654 * 16 15 14 33 33 H 1.09002 * 109.54114 * 54.81788 * 17 16 15 34 34 H 1.09003 * 109.52420 * 303.05624 * 18 17 16 35 35 H 1.09004 * 109.52795 * 63.24562 * 18 17 16 36 36 H 1.08998 * 109.48557 * 297.62898 * 19 18 17 37 37 H 1.08996 * 109.48697 * 177.58670 * 19 18 17 38 38 H 1.08994 * 109.48392 * 301.17610 * 21 20 19 39 39 H 1.09004 * 109.48595 * 181.14253 * 21 20 19 40 40 H 1.08992 * 109.52437 * 182.48091 * 22 21 20 41 41 H 1.09002 * 109.52156 * 62.29008 * 22 21 20 42 42 H 1.07998 * 120.16306 * 180.23087 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3754 2.1125 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5923 1.4099 0.5826 7 6 2.0079 -1.2118 -0.0005 8 1 1.5088 -2.1237 0.2922 9 6 3.3686 -1.2425 -0.3845 10 6 3.8629 -0.3099 -1.3162 11 6 5.1883 -0.3460 -1.6857 12 6 6.0406 -1.2927 -1.1413 13 6 5.5646 -2.2250 -0.2225 14 7 6.4317 -3.1784 0.3166 15 6 7.8392 -3.2010 -0.0891 16 6 8.5628 -4.3331 0.6425 17 6 10.0326 -4.3571 0.2184 18 6 10.1315 -4.7199 -1.2664 19 6 11.6071 -4.8186 -1.6625 20 8 12.2560 -5.7899 -0.8392 21 6 12.2365 -5.4791 0.5555 22 6 10.7862 -5.4070 1.0406 23 6 4.2359 -2.2046 0.1613 24 1 -0.4850 0.8401 0.0004 25 1 3.2032 0.4326 -1.7403 26 1 5.5667 0.3701 -2.4002 27 1 7.0801 -1.3102 -1.4340 28 1 6.1018 -3.8255 0.9595 29 1 8.3053 -2.2485 0.1632 30 1 7.9047 -3.3637 -1.1649 31 1 8.0965 -5.2854 0.3899 32 1 8.4973 -4.1706 1.7184 33 1 10.4764 -3.3756 0.3856 34 1 9.6428 -5.6786 -1.4405 35 1 9.6451 -3.9484 -1.8633 36 1 12.0857 -3.8488 -1.5264 37 1 11.6838 -5.1185 -2.7076 38 1 12.7231 -4.5179 0.7206 39 1 12.7665 -6.2547 1.1083 40 1 10.7678 -5.1268 2.0938 41 1 10.3107 -6.3795 0.9131 42 1 3.8666 -2.9247 0.8764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313410384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:10 Heat of formation + Delta-G solvation = -49.176999 kcal Electronic energy + Delta-G solvation = -20516.943275 eV Core-core repulsion = 17460.337031 eV Total energy + Delta-G solvation = -3056.606243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.75387 -38.13248 -36.23567 -34.40287 -33.10693 -31.40667 -30.23208 -30.14321 -27.44868 -25.14841 -24.55461 -23.75298 -21.95505 -21.03621 -20.22719 -19.99139 -17.46300 -16.43397 -16.29463 -15.86313 -15.53018 -15.32169 -14.95376 -14.59396 -14.48609 -14.14683 -13.82764 -13.26752 -12.67992 -12.61287 -12.52359 -12.35253 -12.08019 -11.96094 -11.61238 -11.59749 -11.32128 -11.13165 -10.87345 -10.68257 -10.54600 -10.48822 -10.35690 -9.77906 -9.71752 -9.48066 -9.21516 -8.86557 -7.57371 -6.86566 -6.44323 -4.42417 2.71811 2.94349 3.19584 3.29582 3.41534 3.60276 3.99989 4.08013 4.41151 4.49009 4.62307 4.64530 4.72627 4.90998 5.07278 5.13408 5.21636 5.29549 5.38673 5.43436 5.52842 5.56182 5.61974 5.72251 5.77071 5.84186 5.97353 6.07168 6.12571 6.19885 6.34542 6.60425 6.81774 6.87964 6.91184 7.02437 7.34760 7.59804 7.71834 7.81963 8.02112 8.38206 8.46380 8.53288 8.80661 8.93856 10.16383 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045227 B = 0.002984 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.950040 B = 9380.394172 C = 9626.576555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.244 1.244 7 C -0.452 4.452 8 H 0.088 0.912 9 C 0.125 3.875 10 C -0.272 4.272 11 C -0.048 4.048 12 C -0.301 4.301 13 C 0.235 3.765 14 N -0.762 5.762 15 C 0.134 3.866 16 C -0.124 4.124 17 C -0.085 4.085 18 C -0.154 4.154 19 C 0.060 3.940 20 O -0.386 6.386 21 C 0.060 3.940 22 C -0.151 4.151 23 C -0.279 4.279 24 H 0.283 0.717 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.390 0.610 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.170 -7.108 0.803 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.133 4.133 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.168 1.168 7 C -0.480 4.480 8 H 0.106 0.894 9 C 0.122 3.878 10 C -0.292 4.292 11 C -0.067 4.067 12 C -0.324 4.324 13 C 0.135 3.865 14 N -0.395 5.395 15 C 0.009 3.991 16 C -0.162 4.162 17 C -0.105 4.105 18 C -0.192 4.192 19 C -0.017 4.017 20 O -0.305 6.305 21 C -0.016 4.016 22 C -0.189 4.189 23 C -0.303 4.303 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.223 0.777 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 20.154 -7.134 0.650 21.389 hybrid contribution -0.138 0.793 0.334 0.872 sum 20.016 -6.341 0.984 21.019 Atomic orbital electron populations 1.69712 1.08122 1.30076 1.35958 1.26140 0.94647 1.01762 0.90726 0.86270 0.81253 0.79630 0.78655 1.19794 1.22232 1.16765 1.19448 0.93270 0.95984 1.39339 0.89414 1.17447 0.92438 0.89677 0.88257 1.20901 0.95685 1.06175 1.06424 1.20365 0.93527 0.96020 0.96828 1.19894 0.98468 1.04243 1.09807 1.17556 0.89286 0.87948 0.91696 1.44488 1.07476 1.36855 1.50671 1.21124 0.82419 0.97277 0.98258 1.21793 0.94425 0.99331 1.00623 1.21120 0.95427 0.99033 0.94870 1.22326 0.97295 1.03113 0.96467 1.22609 0.91895 0.92207 0.94971 1.87926 1.77477 1.47873 1.17193 1.22574 0.95935 1.00916 0.82214 1.22249 0.96370 1.00183 1.00060 1.20405 0.91449 1.08414 1.10000 0.90637 0.88550 0.89063 0.89126 0.77723 0.93323 0.92982 0.91396 0.91400 0.90826 0.90876 0.90246 0.93211 0.88891 0.93263 0.89023 0.90812 0.90934 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.29 13.93 55.55 0.77 -21.52 16 2 C 0.09 2.31 5.40 -17.35 -0.09 2.22 16 3 Si 0.91 21.59 24.52 -169.99 -4.17 17.42 16 4 H -0.27 -6.23 6.70 56.52 0.38 -5.85 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.24 -5.94 6.86 56.52 0.39 -5.55 16 7 C -0.45 -12.61 9.57 -37.74 -0.36 -12.97 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 9 C 0.13 3.30 5.10 -106.85 -0.55 2.75 16 10 C -0.27 -6.81 7.17 -38.84 -0.28 -7.09 16 11 C -0.05 -1.09 10.02 -39.69 -0.40 -1.49 16 12 C -0.30 -6.44 9.32 -39.09 -0.36 -6.80 16 13 C 0.23 5.02 6.64 -83.86 -0.56 4.47 16 14 N -0.76 -12.79 5.73 -58.69 -0.34 -13.13 16 15 C 0.13 1.79 4.67 -4.04 -0.02 1.77 16 16 C -0.12 -1.25 4.80 -26.73 -0.13 -1.38 16 17 C -0.09 -0.75 2.27 -90.44 -0.21 -0.95 16 18 C -0.15 -1.37 5.10 -26.59 -0.14 -1.50 16 19 C 0.06 0.51 6.84 37.21 0.25 0.76 16 20 O -0.39 -3.89 10.77 -35.23 -0.38 -4.27 16 21 C 0.06 0.47 6.84 37.21 0.25 0.73 16 22 C -0.15 -1.18 5.42 -26.59 -0.14 -1.32 16 23 C -0.28 -6.69 9.63 -38.68 -0.37 -7.06 16 24 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 25 H 0.10 2.42 4.72 -52.49 -0.25 2.17 16 26 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.09 1.71 6.70 -52.48 -0.35 1.36 16 28 H 0.39 5.95 8.48 -40.82 -0.35 5.60 16 29 H 0.05 0.68 7.93 -51.93 -0.41 0.26 16 30 H 0.05 0.71 6.47 -51.93 -0.34 0.38 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.71 6.75 -51.93 -0.35 0.36 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -29.42 329.37 -8.95 -38.37 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.71 Total: 6.05 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -3.09 Total: -27.88 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.44 Total: -34.65 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.38 Total: -4.27 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.17 Total: 17.42 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.42 -8.95 -38.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.807 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds