Wall clock time and date at job start Mon Mar 30 2020 01:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86806 * 119.99851 * 2 1 4 4 H 1.48496 * 109.47220 * 275.41332 * 3 2 1 5 5 H 1.48501 * 109.46875 * 35.41703 * 3 2 1 6 6 H 1.48498 * 109.46849 * 155.41232 * 3 2 1 7 7 C 1.39926 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00171 * 341.73535 * 7 2 1 9 9 C 1.41414 * 119.99873 * 161.72977 * 7 2 1 10 10 C 1.40783 * 120.20883 * 330.19284 * 9 7 2 11 11 C 1.37643 * 119.89592 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.32021 * 359.74889 * 11 10 9 13 13 C 1.39287 * 120.42558 * 0.51103 * 12 11 10 14 14 N 1.39694 * 119.95232 * 179.76710 * 13 12 11 15 15 C 1.46499 * 119.99957 * 359.72191 * 14 13 12 16 16 C 1.52995 * 109.47187 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47266 * 179.97438 * 16 15 14 18 18 C 1.53172 * 109.54150 * 294.55676 * 17 16 15 19 19 C 1.53094 * 109.16423 * 183.14949 * 18 17 16 20 20 O 1.42912 * 109.41455 * 57.60933 * 19 18 17 21 21 C 1.42906 * 114.09222 * 298.84253 * 20 19 18 22 22 C 1.53100 * 109.41713 * 61.15980 * 21 20 19 23 23 C 1.38312 * 120.09674 * 359.48442 * 13 12 11 24 24 H 0.97004 * 120.00061 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.05316 * 0.02562 * 10 9 7 26 26 H 1.08001 * 119.84078 * 180.02562 * 11 10 9 27 27 H 1.08007 * 119.78443 * 180.28117 * 12 11 10 28 28 H 0.96996 * 119.99921 * 179.72125 * 14 13 12 29 29 H 1.08998 * 109.46964 * 59.99863 * 15 14 13 30 30 H 1.09002 * 109.46944 * 300.00676 * 15 14 13 31 31 H 1.09002 * 109.47145 * 59.99602 * 16 15 14 32 32 H 1.09000 * 109.46877 * 299.99654 * 16 15 14 33 33 H 1.09002 * 109.54114 * 54.81788 * 17 16 15 34 34 H 1.09003 * 109.52420 * 303.05624 * 18 17 16 35 35 H 1.09004 * 109.52795 * 63.24562 * 18 17 16 36 36 H 1.08998 * 109.48557 * 297.62898 * 19 18 17 37 37 H 1.08996 * 109.48697 * 177.58670 * 19 18 17 38 38 H 1.08994 * 109.48392 * 301.17610 * 21 20 19 39 39 H 1.09004 * 109.48595 * 181.14253 * 21 20 19 40 40 H 1.08992 * 109.52437 * 182.48091 * 22 21 20 41 41 H 1.09002 * 109.52156 * 62.29008 * 22 21 20 42 42 H 1.07998 * 120.16306 * 180.23087 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3754 2.1125 -1.3938 5 1 1.5016 2.6169 0.8114 6 1 3.5923 1.4099 0.5826 7 6 2.0079 -1.2118 -0.0005 8 1 1.5088 -2.1237 0.2922 9 6 3.3686 -1.2425 -0.3845 10 6 3.8629 -0.3099 -1.3162 11 6 5.1883 -0.3460 -1.6857 12 6 6.0406 -1.2927 -1.1413 13 6 5.5646 -2.2250 -0.2225 14 7 6.4317 -3.1784 0.3166 15 6 7.8392 -3.2010 -0.0891 16 6 8.5628 -4.3331 0.6425 17 6 10.0326 -4.3571 0.2184 18 6 10.1315 -4.7199 -1.2664 19 6 11.6071 -4.8186 -1.6625 20 8 12.2560 -5.7899 -0.8392 21 6 12.2365 -5.4791 0.5555 22 6 10.7862 -5.4070 1.0406 23 6 4.2359 -2.2046 0.1613 24 1 -0.4850 0.8401 0.0004 25 1 3.2032 0.4326 -1.7403 26 1 5.5667 0.3701 -2.4002 27 1 7.0801 -1.3102 -1.4340 28 1 6.1018 -3.8255 0.9595 29 1 8.3053 -2.2485 0.1632 30 1 7.9047 -3.3637 -1.1649 31 1 8.0965 -5.2854 0.3899 32 1 8.4973 -4.1706 1.7184 33 1 10.4764 -3.3756 0.3856 34 1 9.6428 -5.6786 -1.4405 35 1 9.6451 -3.9484 -1.8633 36 1 12.0857 -3.8488 -1.5264 37 1 11.6838 -5.1185 -2.7076 38 1 12.7231 -4.5179 0.7206 39 1 12.7665 -6.2547 1.1083 40 1 10.7678 -5.1268 2.0938 41 1 10.3107 -6.3795 0.9131 42 1 3.8666 -2.9247 0.8764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313410384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:09 Heat of formation + Delta-G solvation = -66.882521 kcal Electronic energy + Delta-G solvation = -20517.711044 eV Core-core repulsion = 17460.337031 eV Total energy + Delta-G solvation = -3057.374012 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.46943 -39.79510 -37.42312 -35.78025 -34.80917 -32.05926 -32.04250 -31.42633 -28.80008 -27.02040 -25.57669 -24.43104 -23.12309 -22.66212 -21.65960 -20.93742 -19.29492 -17.72642 -17.11721 -17.00128 -16.87412 -16.38109 -16.28403 -16.11779 -15.57106 -15.10760 -15.00371 -14.60041 -14.38391 -14.20591 -13.82548 -13.46049 -13.34717 -13.12209 -12.90329 -12.70474 -12.59997 -12.38552 -12.22049 -12.17471 -11.79217 -11.60430 -11.38265 -11.27416 -11.14680 -11.05019 -10.53081 -10.42065 -9.47432 -8.87111 -8.07368 -6.49675 0.86259 1.10150 1.29770 1.44398 1.53423 2.17507 2.66829 2.71164 3.01272 3.61730 3.70003 3.76448 3.91729 4.09852 4.26218 4.27855 4.36627 4.41090 4.50005 4.56422 4.63338 4.65216 4.74638 4.80290 4.82945 4.89494 4.94621 4.99822 5.07906 5.10405 5.11232 5.18644 5.22805 5.27970 5.46732 5.55942 5.78079 5.87489 5.99837 6.11104 6.29829 6.39144 6.70729 6.83304 6.91377 7.10616 8.21951 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.045227 B = 0.002984 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.950040 B = 9380.394172 C = 9626.576555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.048 3.952 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.490 4.490 8 H 0.051 0.949 9 C 0.107 3.893 10 C -0.295 4.295 11 C -0.048 4.048 12 C -0.291 4.291 13 C 0.241 3.759 14 N -0.753 5.753 15 C 0.131 3.869 16 C -0.113 4.113 17 C -0.082 4.082 18 C -0.153 4.153 19 C 0.058 3.942 20 O -0.407 6.407 21 C 0.056 3.944 22 C -0.147 4.147 23 C -0.298 4.298 24 H 0.292 0.708 25 H 0.092 0.908 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.397 0.603 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.593 -6.521 0.510 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.166 4.166 3 Si 0.796 3.204 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.103 3.897 10 C -0.315 4.315 11 C -0.067 4.067 12 C -0.313 4.313 13 C 0.139 3.861 14 N -0.384 5.384 15 C 0.007 3.993 16 C -0.151 4.151 17 C -0.101 4.101 18 C -0.191 4.191 19 C -0.019 4.019 20 O -0.327 6.327 21 C -0.021 4.021 22 C -0.185 4.185 23 C -0.323 4.323 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.144 0.856 27 H 0.142 0.858 28 H 0.231 0.769 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 23.605 -6.583 0.368 24.508 hybrid contribution -0.968 0.430 0.409 1.136 sum 22.637 -6.153 0.777 23.471 Atomic orbital electron populations 1.69739 1.09188 1.31330 1.37904 1.26827 0.95303 1.04295 0.90178 0.85395 0.79423 0.76276 0.79311 1.18429 1.20656 1.17879 1.19450 0.94746 0.95450 1.42354 0.93053 1.17602 0.92033 0.91046 0.88969 1.20972 0.97115 1.06404 1.07020 1.20769 0.92462 0.96602 0.96818 1.20339 0.99923 1.02828 1.08252 1.17643 0.88862 0.88507 0.91137 1.44640 1.08460 1.35481 1.49868 1.21349 0.80336 0.98764 0.98867 1.21702 0.94934 0.97919 1.00559 1.21098 0.94417 0.99692 0.94903 1.22303 0.97569 1.02591 0.96604 1.22689 0.91526 0.92440 0.95229 1.87902 1.77738 1.48708 1.18336 1.22724 0.96087 1.01877 0.81364 1.22216 0.96186 0.99491 1.00602 1.20523 0.92828 1.08318 1.10601 0.89722 0.89017 0.85573 0.85769 0.76876 0.92952 0.92678 0.91474 0.90803 0.90244 0.91790 0.90233 0.92312 0.88273 0.92363 0.87908 0.89577 0.91603 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.67 13.93 21.82 0.30 -48.36 16 2 C 0.05 2.67 5.40 85.25 0.46 3.13 16 3 Si 0.97 44.90 24.52 68.60 1.68 46.58 16 4 H -0.26 -11.29 6.70 99.48 0.67 -10.63 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -12.07 6.86 99.48 0.68 -11.39 16 7 C -0.49 -28.86 9.57 23.46 0.22 -28.64 16 8 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 9 C 0.11 5.72 5.10 -21.31 -0.11 5.61 16 10 C -0.29 -14.54 7.17 22.75 0.16 -14.38 16 11 C -0.05 -2.01 10.02 22.20 0.22 -1.78 16 12 C -0.29 -11.36 9.32 22.59 0.21 -11.15 16 13 C 0.24 9.81 6.64 38.16 0.25 10.06 16 14 N -0.75 -23.28 5.73 -339.60 -1.95 -25.22 16 15 C 0.13 3.02 4.67 86.38 0.40 3.43 16 16 C -0.11 -1.94 4.80 30.59 0.15 -1.80 16 17 C -0.08 -1.19 2.27 -10.68 -0.02 -1.21 16 18 C -0.15 -2.33 5.10 30.68 0.16 -2.17 16 19 C 0.06 0.84 6.84 72.01 0.49 1.34 16 20 O -0.41 -7.37 10.77 -148.98 -1.60 -8.97 16 21 C 0.06 0.73 6.84 72.02 0.49 1.23 16 22 C -0.15 -1.90 5.42 30.69 0.17 -1.73 16 23 C -0.30 -14.41 9.63 22.86 0.22 -14.19 16 24 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 25 H 0.09 4.54 4.72 -2.91 -0.01 4.53 16 26 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 27 H 0.12 4.03 6.70 -2.91 -0.02 4.01 16 28 H 0.40 11.27 8.48 -92.71 -0.79 10.48 16 29 H 0.05 1.23 7.93 -2.39 -0.02 1.21 16 30 H 0.06 1.29 6.47 -2.39 -0.02 1.27 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.20 6.75 -2.38 -0.02 1.18 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -64.84 329.37 2.07 -62.77 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.15 Total: 25.46 kcal Atomic # 6 Polarization: -55.73 SS G_CDS: 3.48 Total: -52.25 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.64 Total: -73.59 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -1.60 Total: -8.97 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.68 Total: 46.58 kcal Total: -64.84 2.07 -62.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313410384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.113 kcal (2) G-P(sol) polarization free energy of solvation -64.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds