Wall clock time and date at job start Mon Mar 30 2020 02:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38376 * 119.85404 * 2 1 4 4 C 1.37938 * 120.14405 * 179.97438 * 3 2 1 5 5 C 1.39597 * 119.85254 * 0.07320 * 4 3 2 6 6 C 1.47846 * 120.14451 * 180.22524 * 5 4 3 7 7 O 1.21554 * 119.99902 * 174.18984 * 6 5 4 8 8 N 1.34776 * 120.00040 * 354.19267 * 6 5 4 9 9 C 1.46501 * 120.00162 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47124 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46757 * 299.99695 * 10 9 8 12 12 C 1.52993 * 109.47516 * 59.99681 * 10 9 8 13 13 C 1.50698 * 109.47072 * 180.02562 * 10 9 8 14 14 H 1.08004 * 120.00123 * 357.96968 * 13 10 9 15 15 C 1.37881 * 120.00371 * 177.97285 * 13 10 9 16 16 N 1.31508 * 120.00153 * 196.30490 * 15 13 10 17 17 Si 1.86797 * 119.99472 * 16.30718 * 15 13 10 18 18 H 1.48500 * 109.47423 * 84.46606 * 17 15 13 19 19 H 1.48510 * 109.46886 * 204.46721 * 17 15 13 20 20 H 1.48505 * 109.47578 * 324.46285 * 17 15 13 21 21 C 1.39557 * 119.71029 * 359.95132 * 5 4 3 22 22 C 1.50709 * 120.07286 * 180.02562 * 21 5 4 23 23 C 1.37973 * 119.85458 * 0.02562 * 21 5 4 24 24 H 1.08999 * 109.46662 * 269.97906 * 1 2 3 25 25 H 1.09004 * 109.46773 * 29.97144 * 1 2 3 26 26 H 1.08994 * 109.47167 * 149.97232 * 1 2 3 27 27 H 1.08000 * 119.93081 * 0.02629 * 3 2 1 28 28 H 1.08004 * 120.07418 * 180.02562 * 4 3 2 29 29 H 0.97003 * 119.99774 * 0.02562 * 8 6 5 30 30 H 1.09003 * 109.46806 * 300.00382 * 9 8 6 31 31 H 1.08993 * 109.46701 * 59.99905 * 9 8 6 32 32 H 1.09005 * 109.47293 * 66.79100 * 11 10 9 33 33 H 1.09005 * 109.47409 * 186.79040 * 11 10 9 34 34 H 1.09001 * 109.47802 * 306.78942 * 11 10 9 35 35 H 1.09002 * 109.47144 * 60.00405 * 12 10 9 36 36 H 1.09007 * 109.47226 * 180.02562 * 12 10 9 37 37 H 1.08994 * 109.47414 * 300.00145 * 12 10 9 38 38 H 0.97001 * 120.00015 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.46886 * 82.91678 * 22 21 5 40 40 H 1.08997 * 109.46618 * 202.92259 * 22 21 5 41 41 H 1.09000 * 109.46755 * 322.91680 * 22 21 5 42 42 H 1.07998 * 119.93288 * 180.02562 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2762 -0.0001 -0.0005 6 6 5.7547 -0.0002 0.0051 7 8 6.3620 -1.0478 0.1108 8 7 6.4290 1.1614 -0.1069 9 6 7.8940 1.1614 -0.1008 10 6 8.4046 2.5969 -0.2400 11 6 7.9001 3.1922 -1.5560 12 6 7.8897 3.4371 0.9303 13 6 9.9115 2.5969 -0.2343 14 1 10.4511 1.6698 -0.1079 15 6 10.6016 3.7803 -0.3905 16 7 11.8783 3.7604 -0.7056 17 14 9.7231 5.4118 -0.1543 18 1 9.7094 5.7623 1.2887 19 1 10.4339 6.4713 -0.9144 20 1 8.3277 5.2990 -0.6496 21 6 3.5753 -1.2069 -0.0010 22 6 4.3239 -2.5150 -0.0015 23 6 2.1956 -1.1999 -0.0010 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6524 2.1334 0.0004 28 1 4.1117 2.1445 0.0010 29 1 5.9443 1.9974 -0.1908 30 1 8.2534 0.7375 0.8369 31 1 8.2607 0.5625 -0.9344 32 1 6.8166 3.3039 -1.5126 33 1 8.3598 4.1680 -1.7134 34 1 8.1642 2.5291 -2.3798 35 1 8.2491 3.0130 1.8679 36 1 8.2531 4.4600 0.8309 37 1 6.7998 3.4372 0.9258 38 1 12.3636 4.5930 -0.8159 39 1 4.6142 -2.7677 1.0182 40 1 3.6828 -3.3002 -0.4021 41 1 5.2159 -2.4228 -0.6211 42 1 1.6520 -2.1330 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315616114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:46 Heat of formation + Delta-G solvation = -9.263652 kcal Electronic energy + Delta-G solvation = -21305.857006 eV Core-core repulsion = 18250.981536 eV Total energy + Delta-G solvation = -3054.875471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30223 -38.52463 -36.71846 -33.67115 -33.39074 -32.12826 -31.29690 -27.87562 -27.20213 -26.38377 -25.65155 -24.76991 -22.71032 -21.31673 -20.06183 -19.16752 -17.60082 -16.17724 -15.90823 -15.38841 -15.13205 -14.99430 -14.68435 -14.54621 -14.05378 -13.45370 -13.34999 -13.19778 -12.95987 -12.79400 -12.66538 -12.54591 -12.22715 -12.06365 -11.90715 -11.75115 -11.69314 -11.29831 -11.12682 -10.45137 -10.32022 -10.19140 -10.04492 -9.37062 -9.13960 -8.94124 -8.79608 -8.69386 -8.47233 -8.38691 -6.16761 -4.12670 0.82223 1.25080 3.01359 3.22488 3.30069 3.37202 3.60435 3.84524 4.34658 4.57607 4.60688 4.76068 4.94111 5.09858 5.14084 5.18069 5.30837 5.43925 5.47296 5.65177 5.74914 5.79798 5.87905 5.88988 6.04438 6.05358 6.16800 6.24125 6.34455 6.37010 6.46368 6.51757 6.55852 6.63228 6.68919 6.78775 6.82735 6.96674 7.21484 7.41902 7.71485 7.92237 8.43177 8.58200 8.89689 9.48035 10.96343 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029937 B = 0.004184 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.067184 B = 6690.398313 C = 7411.049234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.079 4.079 5 C -0.139 4.139 6 C 0.548 3.452 7 O -0.539 6.539 8 N -0.717 5.717 9 C 0.142 3.858 10 C 0.029 3.971 11 C -0.145 4.145 12 C -0.146 4.146 13 C -0.515 4.515 14 H 0.077 0.923 15 C 0.077 3.923 16 N -0.889 5.889 17 Si 0.878 3.122 18 H -0.285 1.285 19 H -0.304 1.304 20 H -0.245 1.245 21 C -0.020 4.020 22 C -0.120 4.120 23 C -0.135 4.135 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.395 0.605 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.134 -5.069 1.017 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.064 4.064 3 C -0.155 4.155 4 C -0.097 4.097 5 C -0.142 4.142 6 C 0.335 3.665 7 O -0.419 6.419 8 N -0.368 5.368 9 C 0.020 3.980 10 C 0.027 3.973 11 C -0.202 4.202 12 C -0.203 4.203 13 C -0.553 4.553 14 H 0.095 0.905 15 C -0.126 4.126 16 N -0.525 5.525 17 Si 0.710 3.290 18 H -0.212 1.212 19 H -0.232 1.232 20 H -0.171 1.171 21 C -0.021 4.021 22 C -0.176 4.176 23 C -0.153 4.153 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.231 0.769 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.472 -5.705 1.044 22.242 hybrid contribution -0.525 1.574 0.192 1.671 sum -21.997 -4.131 1.236 22.416 Atomic orbital electron populations 1.20839 0.91058 1.02929 1.02483 1.20082 0.96143 0.93140 0.97054 1.20926 0.93838 0.97704 1.03066 1.21329 0.94475 0.97146 0.96796 1.19954 0.93492 0.93792 1.06969 1.18242 0.86742 0.84225 0.77268 1.90700 1.70012 1.30858 1.50305 1.46271 1.09168 1.08362 1.72983 1.21531 0.75889 0.98992 1.01599 1.18712 0.97048 0.89978 0.91515 1.22355 0.97017 1.01637 0.99212 1.22331 0.97455 1.00022 1.00538 1.20701 0.87557 0.95732 1.51296 0.90537 1.24954 0.94716 0.99044 0.93857 1.69972 1.09328 1.27655 1.45552 0.87456 0.80222 0.83537 0.77791 1.21249 1.23200 1.17121 1.20059 0.93270 0.95037 0.93769 1.21080 1.00837 0.91934 1.03786 1.20909 0.93202 0.97724 1.03459 0.90935 0.91356 0.91394 0.85645 0.85599 0.76930 0.91868 0.91709 0.96030 0.92332 0.93260 0.92792 0.93972 0.95408 0.92548 0.90703 0.92769 0.88397 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.06 -0.62 5.89 -104.53 -0.62 -1.24 16 3 C -0.14 -1.40 9.68 -39.64 -0.38 -1.79 16 4 C -0.08 -0.94 9.53 -39.18 -0.37 -1.31 16 5 C -0.14 -1.99 5.87 -104.97 -0.62 -2.60 16 6 C 0.55 9.40 7.71 -12.33 -0.10 9.31 16 7 O -0.54 -10.66 13.35 5.32 0.07 -10.59 16 8 N -0.72 -12.14 4.95 -61.25 -0.30 -12.45 16 9 C 0.14 2.87 4.50 -4.04 -0.02 2.85 16 10 C 0.03 0.63 0.50 -155.67 -0.08 0.55 16 11 C -0.14 -2.96 7.56 37.16 0.28 -2.68 16 12 C -0.15 -2.95 7.62 37.15 0.28 -2.67 16 13 C -0.52 -13.83 8.61 -34.44 -0.30 -14.12 16 14 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 15 C 0.08 2.14 5.30 -17.82 -0.09 2.05 16 16 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 17 Si 0.88 20.82 22.86 -169.99 -3.89 16.93 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.25 -5.26 4.57 56.52 0.26 -5.00 16 21 C -0.02 -0.27 5.91 -104.22 -0.62 -0.88 16 22 C -0.12 -1.54 8.71 36.01 0.31 -1.23 16 23 C -0.13 -1.45 9.31 -39.64 -0.37 -1.82 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 26 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 28 H 0.13 1.33 6.45 -52.48 -0.34 0.99 16 29 H 0.39 5.87 4.29 -40.82 -0.18 5.69 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.02 0.36 7.06 -51.93 -0.37 0.00 16 33 H 0.06 1.27 3.96 -51.93 -0.21 1.06 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.04 0.89 2.53 -51.92 -0.13 0.76 16 37 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.55 8.04 -51.93 -0.42 0.13 16 41 H 0.10 1.49 5.89 -51.93 -0.31 1.18 16 42 H 0.13 1.07 8.05 -52.49 -0.42 0.64 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -30.60 323.10 -7.01 -37.61 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.21 Total: 5.38 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.32 Total: -16.01 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.47 Total: -38.19 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -3.89 Total: 16.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.60 -7.01 -37.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315616114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.345 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds