Wall clock time and date at job start Mon Mar 30 2020 02:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38376 * 119.85404 * 2 1 4 4 C 1.37938 * 120.14405 * 179.97438 * 3 2 1 5 5 C 1.39597 * 119.85254 * 0.07320 * 4 3 2 6 6 C 1.47846 * 120.14451 * 180.22524 * 5 4 3 7 7 O 1.21554 * 119.99902 * 174.18984 * 6 5 4 8 8 N 1.34776 * 120.00040 * 354.19267 * 6 5 4 9 9 C 1.46501 * 120.00162 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47124 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46757 * 299.99695 * 10 9 8 12 12 C 1.52993 * 109.47516 * 59.99681 * 10 9 8 13 13 C 1.50698 * 109.47072 * 180.02562 * 10 9 8 14 14 H 1.08004 * 120.00123 * 357.96968 * 13 10 9 15 15 C 1.37881 * 120.00371 * 177.97285 * 13 10 9 16 16 N 1.31508 * 120.00153 * 196.30490 * 15 13 10 17 17 Si 1.86797 * 119.99472 * 16.30718 * 15 13 10 18 18 H 1.48500 * 109.47423 * 84.46606 * 17 15 13 19 19 H 1.48510 * 109.46886 * 204.46721 * 17 15 13 20 20 H 1.48505 * 109.47578 * 324.46285 * 17 15 13 21 21 C 1.39557 * 119.71029 * 359.95132 * 5 4 3 22 22 C 1.50709 * 120.07286 * 180.02562 * 21 5 4 23 23 C 1.37973 * 119.85458 * 0.02562 * 21 5 4 24 24 H 1.08999 * 109.46662 * 269.97906 * 1 2 3 25 25 H 1.09004 * 109.46773 * 29.97144 * 1 2 3 26 26 H 1.08994 * 109.47167 * 149.97232 * 1 2 3 27 27 H 1.08000 * 119.93081 * 0.02629 * 3 2 1 28 28 H 1.08004 * 120.07418 * 180.02562 * 4 3 2 29 29 H 0.97003 * 119.99774 * 0.02562 * 8 6 5 30 30 H 1.09003 * 109.46806 * 300.00382 * 9 8 6 31 31 H 1.08993 * 109.46701 * 59.99905 * 9 8 6 32 32 H 1.09005 * 109.47293 * 66.79100 * 11 10 9 33 33 H 1.09005 * 109.47409 * 186.79040 * 11 10 9 34 34 H 1.09001 * 109.47802 * 306.78942 * 11 10 9 35 35 H 1.09002 * 109.47144 * 60.00405 * 12 10 9 36 36 H 1.09007 * 109.47226 * 180.02562 * 12 10 9 37 37 H 1.08994 * 109.47414 * 300.00145 * 12 10 9 38 38 H 0.97001 * 120.00015 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.46886 * 82.91678 * 22 21 5 40 40 H 1.08997 * 109.46618 * 202.92259 * 22 21 5 41 41 H 1.09000 * 109.46755 * 322.91680 * 22 21 5 42 42 H 1.07998 * 119.93288 * 180.02562 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2001 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2762 -0.0001 -0.0005 6 6 5.7547 -0.0002 0.0051 7 8 6.3620 -1.0478 0.1108 8 7 6.4290 1.1614 -0.1069 9 6 7.8940 1.1614 -0.1008 10 6 8.4046 2.5969 -0.2400 11 6 7.9001 3.1922 -1.5560 12 6 7.8897 3.4371 0.9303 13 6 9.9115 2.5969 -0.2343 14 1 10.4511 1.6698 -0.1079 15 6 10.6016 3.7803 -0.3905 16 7 11.8783 3.7604 -0.7056 17 14 9.7231 5.4118 -0.1543 18 1 9.7094 5.7623 1.2887 19 1 10.4339 6.4713 -0.9144 20 1 8.3277 5.2990 -0.6496 21 6 3.5753 -1.2069 -0.0010 22 6 4.3239 -2.5150 -0.0015 23 6 2.1956 -1.1999 -0.0010 24 1 -0.3632 -0.0004 1.0277 25 1 -0.3633 0.8903 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6524 2.1334 0.0004 28 1 4.1117 2.1445 0.0010 29 1 5.9443 1.9974 -0.1908 30 1 8.2534 0.7375 0.8369 31 1 8.2607 0.5625 -0.9344 32 1 6.8166 3.3039 -1.5126 33 1 8.3598 4.1680 -1.7134 34 1 8.1642 2.5291 -2.3798 35 1 8.2491 3.0130 1.8679 36 1 8.2531 4.4600 0.8309 37 1 6.7998 3.4372 0.9258 38 1 12.3636 4.5930 -0.8159 39 1 4.6142 -2.7677 1.0182 40 1 3.6828 -3.3002 -0.4021 41 1 5.2159 -2.4228 -0.6211 42 1 1.6520 -2.1330 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315616114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:46 Heat of formation + Delta-G solvation = -28.631934 kcal Electronic energy + Delta-G solvation = -21306.696878 eV Core-core repulsion = 18250.981536 eV Total energy + Delta-G solvation = -3055.715342 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44092 -39.68668 -38.33803 -35.21529 -34.25615 -33.71641 -32.65301 -28.84490 -28.11878 -28.01388 -27.26718 -26.58303 -23.61998 -22.40797 -21.23702 -20.84512 -18.87597 -18.06151 -17.18240 -17.00046 -16.45502 -15.94386 -15.88613 -15.76180 -15.14590 -14.83965 -14.72235 -14.46894 -14.19877 -14.07398 -14.02135 -13.85994 -13.75563 -13.28927 -12.96564 -12.75783 -12.57551 -12.49824 -12.39853 -12.18225 -11.97200 -11.90410 -11.76151 -11.11838 -10.64968 -10.60428 -10.37352 -10.08701 -9.76933 -9.51697 -8.31696 -6.32333 -0.11459 0.41521 1.35862 1.38162 1.50361 1.88770 2.25324 2.34641 2.85098 3.04239 3.72617 3.81295 3.90952 4.01265 4.08484 4.30855 4.38254 4.39760 4.42373 4.65519 4.74145 4.76195 4.79620 4.82139 4.82620 4.86498 4.90085 4.92473 5.04227 5.05242 5.14571 5.23089 5.30078 5.34801 5.42591 5.52957 5.61242 5.63109 5.70845 5.78535 5.99853 6.29166 6.60697 6.71834 7.25870 7.32099 8.85627 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029937 B = 0.004184 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.067184 B = 6690.398313 C = 7411.049234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.057 4.057 3 C -0.137 4.137 4 C -0.080 4.080 5 C -0.166 4.166 6 C 0.545 3.455 7 O -0.576 6.576 8 N -0.707 5.707 9 C 0.158 3.842 10 C 0.029 3.971 11 C -0.143 4.143 12 C -0.146 4.146 13 C -0.522 4.522 14 H 0.026 0.974 15 C 0.018 3.982 16 N -0.944 5.944 17 Si 0.938 3.062 18 H -0.281 1.281 19 H -0.312 1.312 20 H -0.198 1.198 21 C -0.038 4.038 22 C -0.116 4.116 23 C -0.137 4.137 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.141 0.859 29 H 0.408 0.592 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.265 0.735 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.248 -3.333 1.164 27.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.154 4.154 4 C -0.099 4.099 5 C -0.169 4.169 6 C 0.334 3.666 7 O -0.458 6.458 8 N -0.359 5.359 9 C 0.034 3.966 10 C 0.027 3.973 11 C -0.201 4.201 12 C -0.202 4.202 13 C -0.560 4.560 14 H 0.045 0.955 15 C -0.179 4.179 16 N -0.583 5.583 17 Si 0.766 3.234 18 H -0.208 1.208 19 H -0.242 1.242 20 H -0.121 1.121 21 C -0.039 4.039 22 C -0.172 4.172 23 C -0.155 4.155 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.173 0.827 28 H 0.159 0.841 29 H 0.247 0.753 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -26.640 -3.972 1.192 26.961 hybrid contribution 1.030 0.867 0.145 1.354 sum -25.610 -3.105 1.338 25.832 Atomic orbital electron populations 1.20926 0.88471 1.04237 1.03595 1.20537 0.98006 0.92561 0.94586 1.21311 0.93169 0.99211 1.01758 1.21526 0.95468 0.96605 0.96307 1.19789 0.91261 0.95553 1.10336 1.18822 0.88272 0.83430 0.76030 1.90691 1.71174 1.32125 1.51808 1.45993 1.07388 1.09253 1.73315 1.21050 0.78175 0.97742 0.99615 1.18639 0.93658 0.91332 0.93639 1.22278 0.99686 1.00567 0.97535 1.22258 1.00234 0.98814 0.98941 1.21013 0.90718 0.93895 1.50412 0.95524 1.25861 0.95337 1.03308 0.93421 1.70132 1.11625 1.28705 1.47873 0.86482 0.81368 0.77687 0.77846 1.20796 1.24156 1.12133 1.20198 0.94518 0.94453 0.94711 1.20968 1.00229 0.93319 1.02692 1.21172 0.92112 0.99423 1.02816 0.89722 0.89940 0.90330 0.82659 0.84137 0.75307 0.93866 0.94118 0.91665 0.93116 0.94258 0.93511 0.94383 0.91031 0.92618 0.91700 0.90199 0.91445 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.01 71.24 0.71 -0.26 16 2 C -0.06 -0.87 5.89 -19.81 -0.12 -0.98 16 3 C -0.14 -2.18 9.68 22.23 0.22 -1.96 16 4 C -0.08 -1.65 9.53 22.53 0.21 -1.44 16 5 C -0.17 -4.53 5.87 -20.09 -0.12 -4.65 16 6 C 0.54 18.75 7.71 86.79 0.67 19.42 16 7 O -0.58 -23.86 13.35 -3.88 -0.05 -23.91 16 8 N -0.71 -23.23 4.95 -465.98 -2.31 -25.54 16 9 C 0.16 6.53 4.50 86.38 0.39 6.92 16 10 C 0.03 1.22 0.50 -52.93 -0.03 1.20 16 11 C -0.14 -5.51 7.56 71.98 0.54 -4.97 16 12 C -0.15 -5.46 7.62 71.98 0.55 -4.91 16 13 C -0.52 -29.17 8.61 25.60 0.22 -28.95 16 14 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 15 C 0.02 1.05 5.30 84.66 0.45 1.50 16 16 N -0.94 -58.90 13.96 21.45 0.30 -58.60 16 17 Si 0.94 42.22 22.86 68.60 1.57 43.79 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.31 -14.48 7.11 99.48 0.71 -13.77 16 20 H -0.20 -7.43 4.57 99.48 0.45 -6.98 16 21 C -0.04 -0.94 5.91 -19.61 -0.12 -1.06 16 22 C -0.12 -3.00 8.71 71.24 0.62 -2.38 16 23 C -0.14 -2.53 9.31 22.23 0.21 -2.32 16 24 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.08 0.50 8.08 -2.38 -0.02 0.48 16 26 H 0.08 0.53 8.08 -2.39 -0.02 0.51 16 27 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 28 H 0.14 2.35 6.45 -2.91 -0.02 2.33 16 29 H 0.41 10.82 4.29 -92.71 -0.40 10.42 16 30 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.93 7.06 -2.38 -0.02 1.91 16 33 H 0.05 2.02 3.96 -2.38 -0.01 2.02 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.47 2.53 -2.38 -0.01 1.46 16 37 H 0.07 2.05 6.86 -2.39 -0.02 2.04 16 38 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 1.56 8.04 -2.39 -0.02 1.54 16 41 H 0.07 2.16 5.89 -2.39 -0.01 2.15 16 42 H 0.15 1.98 8.05 -2.91 -0.02 1.95 16 Total: -1.00 -71.74 323.10 4.30 -67.44 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.37 Total: 21.66 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.41 Total: -24.84 kcal Atomic # 7 Polarization: -82.13 SS G_CDS: -2.01 Total: -84.14 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.91 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.57 Total: 43.79 kcal Total: -71.74 4.30 -67.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315616114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.812 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds