Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38382 * 119.93077 * 2 1 4 4 C 1.38336 * 120.29414 * 180.23414 * 3 2 1 5 5 C 1.37978 * 120.14213 * 359.48159 * 4 3 2 6 6 C 1.50698 * 120.07293 * 180.23364 * 5 4 3 7 7 C 1.39550 * 119.85369 * 0.51848 * 5 4 3 8 8 C 1.47848 * 120.14694 * 179.72121 * 7 5 4 9 9 O 1.21553 * 119.99995 * 353.76626 * 8 7 5 10 10 N 1.34776 * 120.00445 * 173.76353 * 8 7 5 11 11 C 1.46501 * 120.00041 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46814 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47595 * 300.00554 * 12 11 10 14 14 C 1.53001 * 109.46881 * 60.00411 * 12 11 10 15 15 C 1.50701 * 109.46907 * 179.97438 * 12 11 10 16 16 H 1.08002 * 120.00120 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99720 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00115 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99616 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47273 * 90.00401 * 19 17 15 21 21 H 1.48509 * 109.46815 * 210.00194 * 19 17 15 22 22 H 1.48495 * 109.47279 * 329.99764 * 19 17 15 23 23 C 1.37939 * 119.92536 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47367 * 89.99751 * 1 2 3 25 25 H 1.08996 * 109.47589 * 210.00761 * 1 2 3 26 26 H 1.09005 * 109.46920 * 330.00004 * 1 2 3 27 27 H 1.07998 * 119.85183 * 359.95223 * 3 2 1 28 28 H 1.08002 * 119.92768 * 179.72659 * 4 3 2 29 29 H 1.09002 * 109.47750 * 263.68913 * 6 5 4 30 30 H 1.09000 * 109.47123 * 23.69210 * 6 5 4 31 31 H 1.09000 * 109.47071 * 143.68402 * 6 5 4 32 32 H 0.97004 * 119.99778 * 0.02562 * 10 8 7 33 33 H 1.08994 * 109.47167 * 300.00014 * 11 10 8 34 34 H 1.08994 * 109.46620 * 60.00819 * 11 10 8 35 35 H 1.09005 * 109.47104 * 59.99526 * 13 12 11 36 36 H 1.08999 * 109.47492 * 180.02562 * 13 12 11 37 37 H 1.09003 * 109.46861 * 299.99896 * 13 12 11 38 38 H 1.09000 * 109.46860 * 59.99859 * 14 12 11 39 39 H 1.08999 * 109.47341 * 179.97438 * 14 12 11 40 40 H 1.08994 * 109.47638 * 299.99661 * 14 12 11 41 41 H 0.97003 * 119.99896 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.07485 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2080 -0.0049 5 6 4.2812 0.0193 0.0010 6 6 5.7881 0.0307 0.0010 7 6 3.5911 -1.1936 0.0010 8 6 4.3351 -2.4713 0.0010 9 8 5.5452 -2.4699 -0.1132 10 7 3.6716 -3.6376 0.1278 11 6 4.4089 -4.9035 0.1273 12 6 3.4265 -6.0659 0.2847 13 6 2.6683 -5.9177 1.6053 14 6 2.4322 -6.0542 -0.8782 15 6 4.1848 -7.3682 0.2835 16 1 5.2600 -7.3669 0.1812 17 6 3.5060 -8.5612 0.4131 18 7 2.1967 -8.5628 0.5371 19 14 4.4461 -10.1755 0.4124 20 1 4.8269 -10.5271 1.8039 21 1 3.5877 -11.2479 -0.1520 22 1 5.6708 -10.0347 -0.4155 23 6 2.1951 -1.1955 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6539 2.1325 -0.0008 28 1 4.1136 2.1474 -0.0093 29 1 6.1524 -0.0846 -1.0199 30 1 6.1443 0.9765 0.4093 31 1 6.1577 -0.7916 0.6137 32 1 2.7058 -3.6387 0.2186 33 1 4.9493 -5.0089 -0.8134 34 1 5.1168 -4.9119 0.9560 35 1 2.1198 -4.9757 1.6056 36 1 1.9687 -6.7459 1.7176 37 1 3.3766 -5.9259 2.4337 38 1 2.9724 -6.1598 -1.8191 39 1 1.7326 -6.8825 -0.7664 40 1 1.8837 -5.1124 -0.8780 41 1 1.7191 -9.4022 0.6279 42 1 1.6551 -2.1308 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315746657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -29.234054 kcal Electronic energy + Delta-G solvation = -21332.237982 eV Core-core repulsion = 18276.496530 eV Total energy + Delta-G solvation = -3055.741452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.21212 -38.35777 -36.38863 -33.90750 -33.23504 -31.53966 -30.45660 -29.14692 -25.82188 -25.73826 -25.25765 -24.71083 -23.39118 -21.16523 -19.93948 -18.74050 -17.25856 -15.91965 -15.76901 -15.55204 -14.97904 -14.78948 -14.63705 -14.33286 -13.86003 -13.25145 -13.19504 -12.91350 -12.85099 -12.67579 -12.48314 -12.20031 -11.77536 -11.66980 -11.54532 -11.37564 -11.21418 -11.08491 -10.86819 -10.69465 -10.39575 -10.20101 -9.64491 -9.44171 -9.16157 -9.00967 -8.79544 -8.57862 -8.41814 -8.25533 -6.02644 -4.12669 0.92810 1.29405 3.11113 3.28219 3.35213 3.39016 3.72619 3.92393 4.39947 4.69107 4.71854 4.85543 5.02163 5.12062 5.24226 5.42045 5.45236 5.48531 5.62472 5.69576 5.89345 5.91903 5.97875 6.19804 6.23978 6.32227 6.34541 6.45057 6.50209 6.62366 6.78086 6.80982 6.88874 6.94118 7.01012 7.03659 7.34605 7.54537 7.68766 7.99872 8.04322 8.14837 8.37712 8.68611 8.88011 9.53184 10.98815 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027632 B = 0.004160 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.088221 B = 6728.988374 C = 7536.639348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C -0.097 4.097 4 C -0.131 4.131 5 C -0.032 4.032 6 C -0.119 4.119 7 C -0.128 4.128 8 C 0.545 3.455 9 O -0.543 6.543 10 N -0.711 5.711 11 C 0.132 3.868 12 C 0.055 3.945 13 C -0.131 4.131 14 C -0.131 4.131 15 C -0.506 4.506 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.083 4.083 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.397 0.603 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.005 0.995 36 H 0.086 0.914 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.086 0.914 40 H 0.005 0.995 41 H 0.260 0.740 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 17.239 -0.602 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.116 4.116 4 C -0.149 4.149 5 C -0.033 4.033 6 C -0.176 4.176 7 C -0.131 4.131 8 C 0.332 3.668 9 O -0.423 6.423 10 N -0.361 5.361 11 C 0.009 3.991 12 C 0.054 3.946 13 C -0.189 4.189 14 C -0.188 4.188 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.102 4.102 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.233 0.767 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.104 0.896 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.647 17.045 -0.662 17.262 hybrid contribution -0.095 -0.892 0.025 0.898 sum -2.742 16.153 -0.637 16.396 Atomic orbital electron populations 1.20785 0.90850 1.02934 1.02438 1.19816 0.96282 0.92843 1.01396 1.21158 0.94159 0.97475 0.98784 1.21007 0.94045 0.97460 1.02345 1.20051 0.96907 0.91476 0.94847 1.21062 0.90136 1.02709 1.03643 1.19980 0.93502 0.93790 1.05808 1.18265 0.87249 0.83801 0.77439 1.90679 1.13725 1.87246 1.50690 1.46280 1.11240 1.06461 1.72133 1.21749 0.95336 0.81361 1.00616 1.18367 0.91991 0.91414 0.92779 1.21833 1.00276 0.99038 0.97705 1.21832 1.00125 0.99205 0.97679 1.20979 0.93385 0.89884 1.50160 0.92413 1.24876 0.94876 0.98947 0.94785 1.69802 1.06368 1.26324 1.49963 0.86570 0.79851 0.83214 0.78231 1.20713 1.21270 1.19896 1.21254 0.92984 0.98148 0.97784 0.91131 0.91241 0.91587 0.85907 0.85636 0.90848 0.92859 0.88463 0.76704 0.92554 0.92566 0.97591 0.89554 0.95395 0.95386 0.89536 0.97627 0.93010 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.10 -1.15 5.87 -104.68 -0.61 -1.77 16 3 C -0.10 -1.01 9.69 -39.49 -0.38 -1.39 16 4 C -0.13 -1.47 9.66 -39.64 -0.38 -1.85 16 5 C -0.03 -0.44 5.91 -104.23 -0.62 -1.06 16 6 C -0.12 -1.61 8.73 36.00 0.31 -1.29 16 7 C -0.13 -1.96 5.87 -104.97 -0.62 -2.57 16 8 C 0.55 9.98 7.70 -12.33 -0.09 9.89 16 9 O -0.54 -11.23 13.35 5.32 0.07 -11.16 16 10 N -0.71 -13.10 4.91 -61.25 -0.30 -13.40 16 11 C 0.13 2.82 4.50 -4.04 -0.02 2.81 16 12 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 13 C -0.13 -2.95 8.08 37.15 0.30 -2.65 16 14 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 15 C -0.51 -13.23 8.01 -34.44 -0.28 -13.50 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.89 -23.51 9.35 55.43 0.52 -23.00 16 19 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.08 -1.09 9.17 -39.18 -0.36 -1.45 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.57 8.04 -51.93 -0.42 0.15 16 31 H 0.10 1.55 5.86 -51.93 -0.30 1.24 16 32 H 0.40 6.66 4.24 -40.82 -0.17 6.49 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 36 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 40 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 41 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 42 H 0.13 1.55 6.45 -52.49 -0.34 1.22 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -28.22 333.06 -8.31 -36.53 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.34 Total: 5.58 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.26 Total: -15.25 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.22 Total: -36.39 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.22 -8.31 -36.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315746657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.294 kcal (2) G-P(sol) polarization free energy of solvation -28.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds