Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38382 * 119.93077 * 2 1 4 4 C 1.38336 * 120.29414 * 180.23414 * 3 2 1 5 5 C 1.37978 * 120.14213 * 359.48159 * 4 3 2 6 6 C 1.50698 * 120.07293 * 180.23364 * 5 4 3 7 7 C 1.39550 * 119.85369 * 0.51848 * 5 4 3 8 8 C 1.47848 * 120.14694 * 179.72121 * 7 5 4 9 9 O 1.21553 * 119.99995 * 353.76626 * 8 7 5 10 10 N 1.34776 * 120.00445 * 173.76353 * 8 7 5 11 11 C 1.46501 * 120.00041 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46814 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47595 * 300.00554 * 12 11 10 14 14 C 1.53001 * 109.46881 * 60.00411 * 12 11 10 15 15 C 1.50701 * 109.46907 * 179.97438 * 12 11 10 16 16 H 1.08002 * 120.00120 * 0.02562 * 15 12 11 17 17 C 1.37877 * 119.99720 * 180.02562 * 15 12 11 18 18 N 1.31512 * 120.00115 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99616 * 180.02562 * 17 15 12 20 20 H 1.48494 * 109.47273 * 90.00401 * 19 17 15 21 21 H 1.48509 * 109.46815 * 210.00194 * 19 17 15 22 22 H 1.48495 * 109.47279 * 329.99764 * 19 17 15 23 23 C 1.37939 * 119.92536 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.47367 * 89.99751 * 1 2 3 25 25 H 1.08996 * 109.47589 * 210.00761 * 1 2 3 26 26 H 1.09005 * 109.46920 * 330.00004 * 1 2 3 27 27 H 1.07998 * 119.85183 * 359.95223 * 3 2 1 28 28 H 1.08002 * 119.92768 * 179.72659 * 4 3 2 29 29 H 1.09002 * 109.47750 * 263.68913 * 6 5 4 30 30 H 1.09000 * 109.47123 * 23.69210 * 6 5 4 31 31 H 1.09000 * 109.47071 * 143.68402 * 6 5 4 32 32 H 0.97004 * 119.99778 * 0.02562 * 10 8 7 33 33 H 1.08994 * 109.47167 * 300.00014 * 11 10 8 34 34 H 1.08994 * 109.46620 * 60.00819 * 11 10 8 35 35 H 1.09005 * 109.47104 * 59.99526 * 13 12 11 36 36 H 1.08999 * 109.47492 * 180.02562 * 13 12 11 37 37 H 1.09003 * 109.46861 * 299.99896 * 13 12 11 38 38 H 1.09000 * 109.46860 * 59.99859 * 14 12 11 39 39 H 1.08999 * 109.47341 * 179.97438 * 14 12 11 40 40 H 1.08994 * 109.47638 * 299.99661 * 14 12 11 41 41 H 0.97003 * 119.99896 * 179.97438 * 18 17 15 42 42 H 1.07998 * 120.07485 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2080 -0.0049 5 6 4.2812 0.0193 0.0010 6 6 5.7881 0.0307 0.0010 7 6 3.5911 -1.1936 0.0010 8 6 4.3351 -2.4713 0.0010 9 8 5.5452 -2.4699 -0.1132 10 7 3.6716 -3.6376 0.1278 11 6 4.4089 -4.9035 0.1273 12 6 3.4265 -6.0659 0.2847 13 6 2.6683 -5.9177 1.6053 14 6 2.4322 -6.0542 -0.8782 15 6 4.1848 -7.3682 0.2835 16 1 5.2600 -7.3669 0.1812 17 6 3.5060 -8.5612 0.4131 18 7 2.1967 -8.5628 0.5371 19 14 4.4461 -10.1755 0.4124 20 1 4.8269 -10.5271 1.8039 21 1 3.5877 -11.2479 -0.1520 22 1 5.6708 -10.0347 -0.4155 23 6 2.1951 -1.1955 0.0005 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6539 2.1325 -0.0008 28 1 4.1136 2.1474 -0.0093 29 1 6.1524 -0.0846 -1.0199 30 1 6.1443 0.9765 0.4093 31 1 6.1577 -0.7916 0.6137 32 1 2.7058 -3.6387 0.2186 33 1 4.9493 -5.0089 -0.8134 34 1 5.1168 -4.9119 0.9560 35 1 2.1198 -4.9757 1.6056 36 1 1.9687 -6.7459 1.7176 37 1 3.3766 -5.9259 2.4337 38 1 2.9724 -6.1598 -1.8191 39 1 1.7326 -6.8825 -0.7664 40 1 1.8837 -5.1124 -0.8780 41 1 1.7191 -9.4022 0.6279 42 1 1.6551 -2.1308 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315746657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = -43.571028 kcal Electronic energy + Delta-G solvation = -21332.859680 eV Core-core repulsion = 18276.496530 eV Total energy + Delta-G solvation = -3056.363150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.42792 -39.59934 -38.11342 -35.28116 -34.48007 -33.09809 -31.80698 -30.04491 -27.59604 -27.53939 -26.95628 -25.81002 -24.50990 -22.27636 -21.25028 -20.53457 -18.60061 -17.74190 -17.02475 -16.64088 -16.47538 -16.37708 -15.95379 -15.56094 -14.98450 -14.80181 -14.51171 -14.35348 -13.99922 -13.93573 -13.73153 -13.37713 -13.19630 -13.11740 -12.79391 -12.69311 -12.59306 -12.51291 -12.43543 -12.27152 -12.13805 -11.98391 -11.51321 -11.25960 -10.75952 -10.58571 -10.41009 -10.10296 -9.83709 -9.40639 -8.03193 -6.19033 -0.09953 0.38141 1.42366 1.45125 1.53452 1.89720 2.26979 2.48739 2.84437 3.20458 3.70615 3.84416 3.88925 4.08936 4.31012 4.37806 4.48278 4.48539 4.64076 4.69691 4.76243 4.82461 4.87248 4.90656 4.95344 4.99110 5.01999 5.10525 5.16262 5.18934 5.31655 5.33703 5.40311 5.56697 5.59561 5.64210 5.65009 5.66139 6.00170 6.11897 6.18629 6.41604 6.62156 6.84458 7.25126 7.48657 8.95949 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.027632 B = 0.004160 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.088221 B = 6728.988374 C = 7536.639348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.104 4.104 3 C -0.087 4.087 4 C -0.126 4.126 5 C -0.050 4.050 6 C -0.115 4.115 7 C -0.154 4.154 8 C 0.542 3.458 9 O -0.575 6.575 10 N -0.707 5.707 11 C 0.148 3.852 12 C 0.051 3.949 13 C -0.120 4.120 14 C -0.120 4.120 15 C -0.529 4.529 16 H 0.044 0.956 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.946 3.054 20 H -0.279 1.279 21 H -0.282 1.282 22 H -0.276 1.276 23 C -0.093 4.093 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.160 0.840 28 H 0.155 0.845 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.405 0.595 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.033 0.967 36 H 0.065 0.935 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 19.628 -0.585 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.104 4.104 3 C -0.105 4.105 4 C -0.144 4.144 5 C -0.051 4.051 6 C -0.171 4.171 7 C -0.157 4.157 8 C 0.331 3.669 9 O -0.457 6.457 10 N -0.358 5.358 11 C 0.025 3.975 12 C 0.050 3.950 13 C -0.178 4.178 14 C -0.178 4.178 15 C -0.568 4.568 16 H 0.063 0.937 17 C -0.171 4.171 18 N -0.537 5.537 19 Si 0.773 3.227 20 H -0.205 1.205 21 H -0.207 1.207 22 H -0.201 1.201 23 C -0.111 4.111 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.177 0.823 28 H 0.173 0.827 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.243 0.757 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.226 19.444 -0.642 19.908 hybrid contribution 0.359 -1.532 0.018 1.573 sum -3.867 17.913 -0.624 18.336 Atomic orbital electron populations 1.20854 0.88719 1.04008 1.03361 1.20188 0.97841 0.92333 1.00008 1.21626 0.93948 0.98635 0.96292 1.21336 0.94705 0.97413 1.00958 1.20232 0.96988 0.92108 0.95789 1.20957 0.90519 1.02952 1.02652 1.19819 0.94390 0.92455 1.09042 1.18846 0.87100 0.84688 0.76228 1.90665 1.15256 1.87812 1.51997 1.46093 1.11463 1.05628 1.72634 1.21311 0.94767 0.82419 0.99051 1.18366 0.92273 0.90915 0.93429 1.21671 0.99612 0.99608 0.96906 1.21669 0.99471 0.99828 0.96827 1.21250 0.93137 0.91669 1.50724 0.93726 1.25447 0.95667 1.01340 0.94606 1.69902 1.07025 1.26847 1.49954 0.85748 0.78716 0.80182 0.78092 1.20475 1.20734 1.20112 1.21373 0.92103 0.99462 0.98195 0.90166 0.91265 0.89525 0.82252 0.82718 0.91729 0.89981 0.91550 0.75662 0.94198 0.94186 0.94764 0.91665 0.96299 0.96277 0.91656 0.94737 0.92976 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 10.01 71.23 0.71 -0.77 16 2 C -0.10 -1.98 5.87 -19.90 -0.12 -2.09 16 3 C -0.09 -1.43 9.69 22.33 0.22 -1.21 16 4 C -0.13 -2.41 9.66 22.23 0.21 -2.20 16 5 C -0.05 -1.33 5.91 -19.61 -0.12 -1.45 16 6 C -0.11 -3.07 8.73 71.24 0.62 -2.44 16 7 C -0.15 -4.65 5.87 -20.09 -0.12 -4.77 16 8 C 0.54 20.30 7.70 86.79 0.67 20.97 16 9 O -0.58 -24.85 13.35 -3.88 -0.05 -24.90 16 10 N -0.71 -26.36 4.91 -465.98 -2.29 -28.65 16 11 C 0.15 6.55 4.50 86.38 0.39 6.94 16 12 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 13 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 14 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 15 C -0.53 -28.32 8.01 25.60 0.21 -28.12 16 16 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 17 C 0.03 1.55 5.15 84.65 0.44 1.98 16 18 N -0.90 -48.00 9.35 21.45 0.20 -47.80 16 19 Si 0.95 42.81 29.54 68.60 2.03 44.83 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 C -0.09 -2.29 9.17 22.53 0.21 -2.09 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 26 H 0.09 0.80 8.08 -2.38 -0.02 0.78 16 27 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 28 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 1.63 8.04 -2.39 -0.02 1.61 16 31 H 0.07 2.20 5.86 -2.39 -0.01 2.18 16 32 H 0.41 13.40 4.24 -92.71 -0.39 13.00 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.03 1.31 6.86 -2.38 -0.02 1.29 16 36 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 37 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 40 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 41 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 42 H 0.13 2.99 6.45 -2.91 -0.02 2.97 16 Total: -1.00 -62.30 333.06 4.96 -57.34 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: 0.62 Total: 21.75 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 4.46 Total: -22.58 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -2.09 Total: -76.45 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -62.30 4.96 -57.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315746657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.765 kcal (2) G-P(sol) polarization free energy of solvation -62.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds