Wall clock time and date at job start Mon Mar 30 2020 02:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38388 * 119.85031 * 2 1 4 4 C 1.37936 * 120.14009 * 180.26362 * 3 2 1 5 5 C 1.39590 * 119.85517 * 359.43508 * 4 3 2 6 6 C 1.47849 * 120.14459 * 180.25525 * 5 4 3 7 7 O 1.21550 * 119.99762 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99925 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99952 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47013 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47141 * 299.99969 * 10 9 8 12 12 C 1.52995 * 109.47289 * 60.00024 * 10 9 8 13 13 C 1.50699 * 109.46777 * 179.97438 * 10 9 8 14 14 H 1.07999 * 120.00391 * 1.34677 * 13 10 9 15 15 C 1.37877 * 119.99879 * 181.34386 * 13 10 9 16 16 N 1.31510 * 120.00144 * 193.98039 * 15 13 10 17 17 Si 1.86803 * 119.99817 * 13.98073 * 15 13 10 18 18 H 1.48501 * 109.47140 * 84.54715 * 17 15 13 19 19 H 1.48505 * 109.47195 * 204.54752 * 17 15 13 20 20 H 1.48501 * 109.47149 * 324.54641 * 17 15 13 21 21 C 1.39560 * 119.71390 * 0.28997 * 5 4 3 22 22 C 1.37978 * 119.84945 * 359.97438 * 21 5 4 23 23 C 1.50696 * 119.92673 * 180.02562 * 22 21 5 24 24 H 1.09004 * 109.47186 * 270.29989 * 1 2 3 25 25 H 1.08997 * 109.47476 * 30.29907 * 1 2 3 26 26 H 1.08997 * 109.47359 * 150.30046 * 1 2 3 27 27 H 1.07996 * 119.93085 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.07014 * 179.71884 * 4 3 2 29 29 H 0.96998 * 120.00462 * 359.97438 * 8 6 5 30 30 H 1.09002 * 109.46984 * 299.99658 * 9 8 6 31 31 H 1.08995 * 109.47266 * 59.99922 * 9 8 6 32 32 H 1.08998 * 109.47085 * 69.36947 * 11 10 9 33 33 H 1.09001 * 109.47028 * 189.37020 * 11 10 9 34 34 H 1.09000 * 109.46854 * 309.36993 * 11 10 9 35 35 H 1.09002 * 109.47426 * 59.99926 * 12 10 9 36 36 H 1.08993 * 109.47603 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.47214 * 300.00169 * 12 10 9 38 38 H 0.97005 * 119.99848 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.07376 * 180.02562 * 21 5 4 40 40 H 1.09003 * 109.46967 * 90.00205 * 23 22 21 41 41 H 1.08997 * 109.47337 * 209.99734 * 23 22 21 42 42 H 1.08998 * 109.47272 * 330.00252 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5751 1.2073 -0.0055 5 6 4.2762 0.0002 0.0009 6 6 5.7547 0.0002 0.0008 7 8 6.3624 -1.0524 0.0058 8 7 6.4285 1.1674 -0.0050 9 6 7.8935 1.1675 -0.0046 10 6 8.4034 2.6101 -0.0111 11 6 7.8938 3.3254 -1.2639 12 6 7.8931 3.3371 1.2345 13 6 9.9104 2.6101 -0.0101 14 1 10.4505 1.6750 -0.0271 15 6 10.5998 3.8039 0.0127 16 7 11.8858 3.8260 -0.2612 17 14 9.7069 5.3901 0.4326 18 1 9.6474 5.5491 1.9078 19 1 10.4356 6.5403 -0.1603 20 1 8.3278 5.3420 -0.1161 21 6 3.5754 -1.2067 0.0066 22 6 2.1957 -1.1997 0.0065 23 6 1.4373 -2.5019 0.0133 24 1 -0.3634 0.0054 1.0277 25 1 -0.3634 0.8872 -0.5184 26 1 -0.3634 -0.8926 -0.5091 27 1 1.6522 2.1335 -0.0004 28 1 4.1115 2.1447 -0.0101 29 1 5.9435 2.0074 -0.0094 30 1 8.2566 0.6583 0.8882 31 1 8.2571 0.6491 -0.8918 32 1 6.8167 3.4729 -1.1852 33 1 8.3872 4.2930 -1.3558 34 1 8.1144 2.7200 -2.1430 35 1 8.2561 2.8275 2.1270 36 1 8.2567 4.3646 1.2301 37 1 6.8030 3.3370 1.2342 38 1 12.3709 4.6659 -0.2448 39 1 4.1119 -2.1440 0.0120 40 1 1.2543 -2.8105 1.0427 41 1 0.4854 -2.3707 -0.5012 42 1 2.0235 -3.2665 -0.4964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315754373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:50 Heat of formation + Delta-G solvation = -11.687607 kcal Electronic energy + Delta-G solvation = -21092.113173 eV Core-core repulsion = 18037.132592 eV Total energy + Delta-G solvation = -3054.980581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.22479 -38.71542 -36.69892 -33.88836 -33.05308 -32.28158 -31.45291 -28.07617 -27.22179 -26.40734 -25.59417 -24.79946 -22.38703 -22.00061 -19.73023 -19.24062 -17.46698 -16.27673 -16.00841 -15.50836 -15.18958 -14.95621 -14.77478 -14.41396 -14.37893 -13.59434 -13.25449 -13.16426 -13.06370 -12.89612 -12.79065 -12.55956 -12.23430 -12.20768 -12.06252 -11.87015 -11.47179 -11.28944 -11.11916 -10.44988 -10.33616 -10.18642 -10.08184 -9.62817 -9.13605 -8.96233 -8.79966 -8.70176 -8.51863 -8.43398 -6.15710 -4.13087 0.80187 1.22459 2.97901 3.22978 3.29912 3.37692 3.57750 3.86206 4.34478 4.54442 4.58028 4.72626 4.88783 4.96192 5.11682 5.14988 5.23237 5.31364 5.41136 5.54785 5.55802 5.59029 5.75313 5.88615 5.93762 6.03456 6.04653 6.19877 6.27158 6.34054 6.40519 6.47996 6.50862 6.61725 6.67887 6.74603 6.79565 6.94900 7.19970 7.41340 7.70761 7.90740 8.43339 8.56328 8.89799 9.48065 10.97405 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034759 B = 0.003846 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.355679 B = 7278.802009 C = 7867.101627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.070 4.070 3 C -0.125 4.125 4 C -0.089 4.089 5 C -0.128 4.128 6 C 0.548 3.452 7 O -0.545 6.545 8 N -0.716 5.716 9 C 0.141 3.859 10 C 0.028 3.972 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.514 4.514 14 H 0.077 0.923 15 C 0.076 3.924 16 N -0.891 5.891 17 Si 0.885 3.115 18 H -0.286 1.286 19 H -0.305 1.305 20 H -0.249 1.249 21 C -0.059 4.059 22 C -0.099 4.099 23 C -0.116 4.116 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.396 0.604 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.021 0.979 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.028 0.972 38 H 0.265 0.735 39 H 0.135 0.865 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.568 -5.148 0.569 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.070 4.070 3 C -0.143 4.143 4 C -0.108 4.108 5 C -0.131 4.131 6 C 0.335 3.665 7 O -0.424 6.424 8 N -0.367 5.367 9 C 0.019 3.981 10 C 0.027 3.973 11 C -0.200 4.200 12 C -0.205 4.205 13 C -0.551 4.551 14 H 0.095 0.905 15 C -0.127 4.127 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.213 1.213 19 H -0.234 1.234 20 H -0.175 1.175 21 C -0.078 4.078 22 C -0.099 4.099 23 C -0.172 4.172 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.231 0.769 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.075 0.925 39 H 0.153 0.847 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.907 -5.785 0.545 23.632 hybrid contribution -0.410 1.526 0.327 1.614 sum -23.316 -4.258 0.872 23.718 Atomic orbital electron populations 1.20906 0.91146 1.03021 1.02515 1.19937 0.96101 0.92645 0.98314 1.20941 0.93834 0.97646 1.01859 1.21325 0.94469 0.97227 0.97779 1.20090 0.93484 0.94237 1.05313 1.18265 0.86783 0.84333 0.77145 1.90747 1.69868 1.31256 1.50543 1.46250 1.09202 1.07733 1.73505 1.21555 0.75864 0.98967 1.01709 1.18727 0.97104 0.89994 0.91487 1.22301 0.97047 1.01288 0.99331 1.22365 0.97586 1.00141 1.00388 1.20716 0.87520 0.94769 1.52139 0.90488 1.24971 0.94722 0.98835 0.94181 1.69951 1.08608 1.27152 1.47025 0.87298 0.79843 0.82814 0.78263 1.21327 1.23366 1.17528 1.21152 0.92996 0.97957 0.95668 1.19720 0.93386 0.95149 1.01605 1.20854 0.99958 0.93950 1.02482 0.90918 0.91444 0.90973 0.85540 0.85607 0.76856 0.91798 0.91685 0.96035 0.92453 0.93327 0.92709 0.93978 0.95273 0.92537 0.84680 0.91060 0.91117 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.59 36.01 0.35 -0.44 16 2 C -0.07 -0.67 5.89 -104.53 -0.62 -1.29 16 3 C -0.12 -1.26 9.68 -39.64 -0.38 -1.64 16 4 C -0.09 -1.06 9.54 -39.19 -0.37 -1.43 16 5 C -0.13 -1.83 5.87 -104.97 -0.62 -2.45 16 6 C 0.55 9.65 7.77 -12.33 -0.10 9.55 16 7 O -0.54 -11.45 16.35 5.32 0.09 -11.36 16 8 N -0.72 -12.29 4.95 -61.25 -0.30 -12.60 16 9 C 0.14 2.89 4.49 -4.04 -0.02 2.87 16 10 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 11 C -0.14 -2.91 7.53 37.16 0.28 -2.63 16 12 C -0.15 -3.01 7.52 37.15 0.28 -2.73 16 13 C -0.51 -13.85 8.62 -34.44 -0.30 -14.15 16 14 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 15 C 0.08 2.10 5.32 -17.82 -0.09 2.01 16 16 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 17 Si 0.89 21.06 22.79 -169.99 -3.87 17.18 16 18 H -0.29 -6.77 7.10 56.52 0.40 -6.37 16 19 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.25 -5.37 4.65 56.52 0.26 -5.11 16 21 C -0.06 -0.77 9.24 -39.18 -0.36 -1.13 16 22 C -0.10 -1.04 5.87 -104.68 -0.61 -1.66 16 23 C -0.12 -0.89 9.60 36.00 0.35 -0.54 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.07 0.40 5.93 -51.93 -0.31 0.10 16 27 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.13 1.32 6.41 -52.48 -0.34 0.98 16 29 H 0.40 5.90 4.29 -40.82 -0.18 5.72 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 33 H 0.06 1.24 4.30 -51.93 -0.22 1.02 16 34 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 37 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.14 1.80 7.65 -52.49 -0.40 1.40 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.43 5.93 -51.93 -0.31 0.12 16 42 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -31.51 324.05 -6.82 -38.33 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.09 Total: 4.58 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.30 Total: -15.11 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.47 Total: -38.50 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -3.87 Total: 17.18 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.51 -6.82 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315754373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.639 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds