Wall clock time and date at job start Mon Mar 30 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38388 * 119.85031 * 2 1 4 4 C 1.37936 * 120.14009 * 180.26362 * 3 2 1 5 5 C 1.39590 * 119.85517 * 359.43508 * 4 3 2 6 6 C 1.47849 * 120.14459 * 180.25525 * 5 4 3 7 7 O 1.21550 * 119.99762 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99925 * 0.02562 * 6 5 4 9 9 C 1.46504 * 119.99952 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47013 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47141 * 299.99969 * 10 9 8 12 12 C 1.52995 * 109.47289 * 60.00024 * 10 9 8 13 13 C 1.50699 * 109.46777 * 179.97438 * 10 9 8 14 14 H 1.07999 * 120.00391 * 1.34677 * 13 10 9 15 15 C 1.37877 * 119.99879 * 181.34386 * 13 10 9 16 16 N 1.31510 * 120.00144 * 193.98039 * 15 13 10 17 17 Si 1.86803 * 119.99817 * 13.98073 * 15 13 10 18 18 H 1.48501 * 109.47140 * 84.54715 * 17 15 13 19 19 H 1.48505 * 109.47195 * 204.54752 * 17 15 13 20 20 H 1.48501 * 109.47149 * 324.54641 * 17 15 13 21 21 C 1.39560 * 119.71390 * 0.28997 * 5 4 3 22 22 C 1.37978 * 119.84945 * 359.97438 * 21 5 4 23 23 C 1.50696 * 119.92673 * 180.02562 * 22 21 5 24 24 H 1.09004 * 109.47186 * 270.29989 * 1 2 3 25 25 H 1.08997 * 109.47476 * 30.29907 * 1 2 3 26 26 H 1.08997 * 109.47359 * 150.30046 * 1 2 3 27 27 H 1.07996 * 119.93085 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.07014 * 179.71884 * 4 3 2 29 29 H 0.96998 * 120.00462 * 359.97438 * 8 6 5 30 30 H 1.09002 * 109.46984 * 299.99658 * 9 8 6 31 31 H 1.08995 * 109.47266 * 59.99922 * 9 8 6 32 32 H 1.08998 * 109.47085 * 69.36947 * 11 10 9 33 33 H 1.09001 * 109.47028 * 189.37020 * 11 10 9 34 34 H 1.09000 * 109.46854 * 309.36993 * 11 10 9 35 35 H 1.09002 * 109.47426 * 59.99926 * 12 10 9 36 36 H 1.08993 * 109.47603 * 179.97438 * 12 10 9 37 37 H 1.09004 * 109.47214 * 300.00169 * 12 10 9 38 38 H 0.97005 * 119.99848 * 180.02562 * 16 15 13 39 39 H 1.07998 * 120.07376 * 180.02562 * 21 5 4 40 40 H 1.09003 * 109.46967 * 90.00205 * 23 22 21 41 41 H 1.08997 * 109.47337 * 209.99734 * 23 22 21 42 42 H 1.08998 * 109.47272 * 330.00252 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5751 1.2073 -0.0055 5 6 4.2762 0.0002 0.0009 6 6 5.7547 0.0002 0.0008 7 8 6.3624 -1.0524 0.0058 8 7 6.4285 1.1674 -0.0050 9 6 7.8935 1.1675 -0.0046 10 6 8.4034 2.6101 -0.0111 11 6 7.8938 3.3254 -1.2639 12 6 7.8931 3.3371 1.2345 13 6 9.9104 2.6101 -0.0101 14 1 10.4505 1.6750 -0.0271 15 6 10.5998 3.8039 0.0127 16 7 11.8858 3.8260 -0.2612 17 14 9.7069 5.3901 0.4326 18 1 9.6474 5.5491 1.9078 19 1 10.4356 6.5403 -0.1603 20 1 8.3278 5.3420 -0.1161 21 6 3.5754 -1.2067 0.0066 22 6 2.1957 -1.1997 0.0065 23 6 1.4373 -2.5019 0.0133 24 1 -0.3634 0.0054 1.0277 25 1 -0.3634 0.8872 -0.5184 26 1 -0.3634 -0.8926 -0.5091 27 1 1.6522 2.1335 -0.0004 28 1 4.1115 2.1447 -0.0101 29 1 5.9435 2.0074 -0.0094 30 1 8.2566 0.6583 0.8882 31 1 8.2571 0.6491 -0.8918 32 1 6.8167 3.4729 -1.1852 33 1 8.3872 4.2930 -1.3558 34 1 8.1144 2.7200 -2.1430 35 1 8.2561 2.8275 2.1270 36 1 8.2567 4.3646 1.2301 37 1 6.8030 3.3370 1.2342 38 1 12.3709 4.6659 -0.2448 39 1 4.1119 -2.1440 0.0120 40 1 1.2543 -2.8105 1.0427 41 1 0.4854 -2.3707 -0.5012 42 1 2.0235 -3.2665 -0.4964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315754373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:49 Heat of formation + Delta-G solvation = -32.148331 kcal Electronic energy + Delta-G solvation = -21093.000417 eV Core-core repulsion = 18037.132592 eV Total energy + Delta-G solvation = -3055.867825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.36777 -39.87940 -38.37874 -35.23988 -34.34856 -33.31041 -33.05154 -28.93763 -28.22740 -28.02600 -27.18481 -26.48739 -23.45900 -22.88089 -21.02728 -20.91762 -18.73727 -18.08426 -17.32675 -17.02601 -16.40743 -16.19079 -16.03109 -15.56626 -15.20086 -14.92508 -14.71272 -14.66180 -14.44349 -14.04636 -13.88310 -13.76460 -13.56291 -13.42920 -13.03755 -12.78730 -12.61023 -12.41165 -12.21876 -12.19452 -11.97387 -11.86091 -11.79413 -11.15665 -10.97218 -10.63384 -10.40994 -10.14613 -9.78916 -9.52657 -8.31370 -6.33707 -0.14752 0.39084 1.36041 1.37507 1.50845 1.83211 2.19911 2.34090 2.84690 3.04523 3.68314 3.80326 3.94276 4.04439 4.04922 4.25735 4.28577 4.31139 4.37935 4.61850 4.73510 4.74770 4.78904 4.82248 4.83360 4.84473 4.91095 4.96583 5.00182 5.02636 5.13485 5.19637 5.32282 5.34699 5.39174 5.43008 5.49151 5.65770 5.69535 5.76948 5.99388 6.28162 6.55981 6.70800 7.19588 7.31255 8.85971 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034759 B = 0.003846 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.355679 B = 7278.802009 C = 7867.101627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.124 4.124 4 C -0.090 4.090 5 C -0.154 4.154 6 C 0.547 3.453 7 O -0.591 6.591 8 N -0.704 5.704 9 C 0.156 3.844 10 C 0.028 3.972 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.521 4.521 14 H 0.026 0.974 15 C 0.017 3.983 16 N -0.946 5.946 17 Si 0.946 3.054 18 H -0.281 1.281 19 H -0.314 1.314 20 H -0.202 1.202 21 C -0.077 4.077 22 C -0.103 4.103 23 C -0.116 4.116 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.142 0.858 29 H 0.410 0.590 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.265 0.735 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.741 -3.198 0.845 28.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.141 4.141 4 C -0.108 4.108 5 C -0.157 4.157 6 C 0.336 3.664 7 O -0.474 6.474 8 N -0.356 5.356 9 C 0.032 3.968 10 C 0.027 3.973 11 C -0.199 4.199 12 C -0.204 4.204 13 C -0.559 4.559 14 H 0.045 0.955 15 C -0.181 4.181 16 N -0.586 5.586 17 Si 0.774 3.226 18 H -0.208 1.208 19 H -0.243 1.243 20 H -0.126 1.126 21 C -0.096 4.096 22 C -0.103 4.103 23 C -0.172 4.172 24 H 0.104 0.896 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.176 0.824 28 H 0.160 0.840 29 H 0.249 0.751 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -28.136 -3.834 0.820 28.407 hybrid contribution 1.166 0.754 0.225 1.407 sum -26.969 -3.079 1.045 27.165 Atomic orbital electron populations 1.21006 0.88460 1.04398 1.03686 1.20411 0.98040 0.92034 0.95867 1.21339 0.93138 0.99160 1.00483 1.21516 0.95477 0.96588 0.97248 1.19854 0.91008 0.95989 1.08882 1.18869 0.88404 0.83457 0.75647 1.90717 1.71194 1.32841 1.52610 1.45960 1.07464 1.08599 1.73559 1.21098 0.78113 0.97868 0.99716 1.18653 0.93712 0.91215 0.93717 1.22228 0.99728 1.00153 0.97765 1.22303 1.00416 0.99098 0.98628 1.21024 0.90683 0.92898 1.51318 0.95522 1.25886 0.95366 1.02944 0.93893 1.70115 1.10910 1.28216 1.49314 0.86316 0.80817 0.77193 0.78241 1.20780 1.24327 1.12569 1.21189 0.94380 0.97097 0.96968 1.20024 0.92384 0.97090 1.00848 1.20926 1.00462 0.92462 1.03371 0.89630 0.89925 0.89857 0.82363 0.83998 0.75072 0.93840 0.94039 0.91549 0.93310 0.94124 0.93482 0.94373 0.90828 0.92598 0.86405 0.90113 0.88958 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.59 71.24 0.68 -0.29 16 2 C -0.06 -0.98 5.89 -19.81 -0.12 -1.09 16 3 C -0.12 -1.94 9.68 22.23 0.22 -1.73 16 4 C -0.09 -1.83 9.54 22.52 0.21 -1.62 16 5 C -0.15 -4.27 5.87 -20.09 -0.12 -4.39 16 6 C 0.55 19.41 7.77 86.79 0.67 20.08 16 7 O -0.59 -26.08 16.35 -3.87 -0.06 -26.15 16 8 N -0.70 -23.43 4.95 -465.96 -2.31 -25.74 16 9 C 0.16 6.51 4.49 86.38 0.39 6.90 16 10 C 0.03 1.22 0.50 -52.93 -0.03 1.19 16 11 C -0.14 -5.41 7.53 71.98 0.54 -4.87 16 12 C -0.15 -5.57 7.52 71.98 0.54 -5.03 16 13 C -0.52 -29.20 8.62 25.60 0.22 -28.98 16 14 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 15 C 0.02 0.94 5.32 84.66 0.45 1.39 16 16 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 17 Si 0.95 42.60 22.79 68.60 1.56 44.16 16 18 H -0.28 -12.37 7.10 99.48 0.71 -11.67 16 19 H -0.31 -14.55 7.11 99.48 0.71 -13.85 16 20 H -0.20 -7.60 4.65 99.48 0.46 -7.14 16 21 C -0.08 -2.00 9.24 22.53 0.21 -1.79 16 22 C -0.10 -1.96 5.87 -19.90 -0.12 -2.08 16 23 C -0.12 -1.50 9.60 71.23 0.68 -0.82 16 24 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 25 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 26 H 0.08 0.52 5.93 -2.39 -0.01 0.51 16 27 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 28 H 0.14 2.33 6.41 -2.91 -0.02 2.31 16 29 H 0.41 10.86 4.29 -92.71 -0.40 10.46 16 30 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.94 7.13 -2.39 -0.02 1.92 16 33 H 0.05 1.95 4.30 -2.39 -0.01 1.94 16 34 H 0.04 1.59 8.12 -2.39 -0.02 1.58 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.48 2.25 -2.39 -0.01 1.47 16 37 H 0.07 2.12 6.86 -2.39 -0.02 2.10 16 38 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 39 H 0.12 3.34 7.65 -2.91 -0.02 3.31 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 0.79 5.93 -2.39 -0.01 0.77 16 42 H 0.06 0.88 8.08 -2.39 -0.02 0.87 16 Total: -1.00 -73.98 324.05 4.32 -69.66 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.39 Total: 20.06 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 4.44 Total: -23.12 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.01 Total: -84.62 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.06 Total: -26.15 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.56 Total: 44.16 kcal Total: -73.98 4.32 -69.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315754373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.512 kcal (2) G-P(sol) polarization free energy of solvation -73.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds