Wall clock time and date at job start Mon Mar 30 2020 02:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.50709 * 109.47444 * 89.99457 * 6 5 4 8 8 O 1.21276 * 119.99531 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00247 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46858 * 299.99584 * 11 10 9 13 13 C 1.52996 * 109.47448 * 59.99549 * 11 10 9 14 14 C 1.50695 * 109.46966 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00531 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99778 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00264 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 119.99904 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46887 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46973 * 120.00175 * 18 16 14 21 21 H 1.48496 * 109.47029 * 240.00503 * 18 16 14 22 22 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 5 4 24 24 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 25 25 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 26 26 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 27 27 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 30 30 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 31 31 H 0.97006 * 119.99744 * 359.97438 * 9 7 6 32 32 H 1.09000 * 109.46784 * 299.99416 * 10 9 7 33 33 H 1.08993 * 109.47321 * 59.99709 * 10 9 7 34 34 H 1.08997 * 109.47499 * 60.00295 * 12 11 10 35 35 H 1.08998 * 109.47469 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.47386 * 300.00386 * 12 11 10 37 37 H 1.09000 * 109.47244 * 60.00055 * 13 11 10 38 38 H 1.09003 * 109.47362 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47060 * 300.00320 * 13 11 10 40 40 H 0.97000 * 120.00731 * 179.97438 * 17 16 14 41 41 H 1.07999 * 119.99934 * 180.25938 * 22 5 4 42 42 H 1.08001 * 120.00294 * 179.76453 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2865 -0.0027 1.4088 8 8 5.5019 -0.0049 2.3336 9 7 7.6124 -0.0027 1.6501 10 6 8.1060 -0.0058 3.0294 11 6 9.6360 -0.0044 3.0236 12 6 10.1443 -1.2514 2.2972 13 6 10.1422 1.2470 2.3036 14 6 10.1437 -0.0071 4.4424 15 1 9.4450 -0.0090 5.2660 16 6 11.5002 -0.0069 4.6892 17 7 12.3510 -0.0040 3.6864 18 14 12.1296 -0.0094 6.4481 19 1 10.9781 -0.0120 7.3858 20 1 12.9560 -1.2219 6.6763 21 1 12.9549 1.2031 6.6802 22 6 3.5805 -1.1972 0.0010 23 6 2.1982 -1.1972 0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 0.0001 29 1 6.1400 -0.8891 -0.5270 30 1 6.1401 0.8909 -0.5236 31 1 8.2400 -0.0013 0.9103 32 1 7.7442 0.8828 3.5467 33 1 7.7450 -0.8971 3.5424 34 1 9.7771 -1.2491 1.2710 35 1 11.2343 -1.2507 2.2934 36 1 9.7837 -2.1430 2.8101 37 1 9.7801 2.1354 2.8210 38 1 11.2322 1.2478 2.2990 39 1 9.7749 1.2493 1.2773 40 1 13.3054 -0.0035 3.8600 41 1 4.1205 -2.1325 0.0013 42 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315760722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:53 Heat of formation + Delta-G solvation = -34.308299 kcal Electronic energy + Delta-G solvation = -20728.493968 eV Core-core repulsion = 17672.532480 eV Total energy + Delta-G solvation = -3055.961488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.85161 -38.71075 -36.35372 -33.73494 -33.24582 -30.97956 -30.90425 -29.59120 -26.09763 -25.73299 -25.33968 -24.23253 -22.71623 -21.07960 -19.92149 -18.77796 -16.88920 -16.21392 -15.73348 -15.73113 -15.23346 -14.72741 -14.58625 -14.51971 -13.85416 -13.41704 -13.28130 -13.04954 -12.93794 -12.70465 -12.41739 -12.19452 -11.85902 -11.78482 -11.35136 -11.20762 -11.12470 -10.94137 -10.87030 -10.66303 -10.39048 -10.20782 -9.63963 -9.55138 -9.26256 -8.87733 -8.78676 -8.45106 -8.44947 -8.29563 -6.02766 -4.12683 1.33064 1.45228 3.09615 3.26777 3.35378 3.40088 3.60271 4.02563 4.40558 4.68731 4.76814 4.89280 5.01909 5.10779 5.24099 5.33293 5.42305 5.43349 5.47237 5.54089 5.69241 5.71343 6.08304 6.08831 6.24904 6.33668 6.41639 6.50964 6.58079 6.64065 6.78990 6.81832 6.93468 7.01534 7.03429 7.05538 7.35406 7.55182 7.69199 8.00573 8.07377 8.16567 8.38505 8.74706 8.88699 9.53268 10.98684 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041701 B = 0.003117 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.277636 B = 8980.505244 C = 9160.785492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.121 4.121 4 C -0.102 4.102 5 C -0.063 4.063 6 C -0.106 4.106 7 C 0.504 3.496 8 O -0.544 6.544 9 N -0.719 5.719 10 C 0.132 3.868 11 C 0.056 3.944 12 C -0.131 4.131 13 C -0.131 4.131 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.102 4.102 23 C -0.121 4.121 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.397 0.603 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.006 0.994 35 H 0.085 0.915 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.006 0.994 40 H 0.259 0.741 41 H 0.120 0.880 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.540 0.016 -11.432 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.063 4.063 6 C -0.146 4.146 7 C 0.289 3.711 8 O -0.422 6.422 9 N -0.370 5.370 10 C 0.010 3.990 11 C 0.055 3.945 12 C -0.189 4.189 13 C -0.189 4.189 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.120 4.120 23 C -0.139 4.139 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.232 0.768 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.104 0.896 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.138 0.862 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.889 0.016 -10.768 19.194 hybrid contribution 0.824 -0.002 0.654 1.053 sum -15.064 0.014 -10.113 18.144 Atomic orbital electron populations 1.20765 0.91476 1.02651 1.01985 1.19876 0.95869 0.93319 1.00329 1.20942 0.94063 0.97387 1.01487 1.20968 0.94185 0.97464 0.99366 1.19308 0.93856 0.93513 0.99621 1.20721 0.92994 1.04981 0.95910 1.20416 0.82872 0.77094 0.90679 1.90691 1.55709 1.49875 1.45957 1.46324 1.06097 1.73732 1.10818 1.21693 0.97110 1.00393 0.79810 1.18354 0.87222 0.92814 0.96107 1.21831 1.04488 0.97592 0.94965 1.21832 1.04479 0.97586 0.94971 1.21038 0.91700 1.50642 0.90994 0.92410 1.24882 0.96831 0.94808 0.97020 1.69808 1.02036 1.50741 1.29920 0.86522 0.78879 0.77528 0.85006 1.19751 1.21058 1.21053 1.20968 0.94184 0.97466 0.99353 1.20943 0.94063 0.97387 1.01484 0.91439 0.91696 0.91697 0.86301 0.86239 0.88251 0.88253 0.76755 0.92844 0.92843 0.97461 0.89596 0.95467 0.95461 0.89601 0.97469 0.93065 0.86240 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 2 C -0.09 -1.06 5.88 -104.62 -0.62 -1.67 16 3 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 4 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 5 C -0.06 -0.84 4.37 -104.63 -0.46 -1.29 16 6 C -0.11 -1.32 5.83 -29.03 -0.17 -1.49 16 7 C 0.50 8.66 7.82 -10.98 -0.09 8.58 16 8 O -0.54 -11.61 16.03 5.56 0.09 -11.52 16 9 N -0.72 -12.65 4.96 -60.30 -0.30 -12.94 16 10 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 11 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 12 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 13 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 14 C -0.51 -13.29 8.01 -34.44 -0.28 -13.56 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 17 N -0.89 -23.61 9.35 55.43 0.52 -23.09 16 18 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.10 -1.30 9.70 -39.58 -0.38 -1.68 16 23 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 30 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 31 H 0.40 6.20 6.16 -40.82 -0.25 5.95 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 35 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 39 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 40 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 41 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 42 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 341.61 15.07 5.15 5.15 Total: -1.00 -29.88 341.61 -8.55 -38.43 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.62 Total: 4.79 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -2.37 Total: -16.57 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.22 Total: -36.03 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.88 -8.55 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315760722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.124 kcal (2) G-P(sol) polarization free energy of solvation -29.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds