Wall clock time and date at job start Mon Mar 30 2020 02:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.50709 * 109.47444 * 89.99457 * 6 5 4 8 8 O 1.21276 * 119.99531 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00247 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47029 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46858 * 299.99584 * 11 10 9 13 13 C 1.52996 * 109.47448 * 59.99549 * 11 10 9 14 14 C 1.50695 * 109.46966 * 179.97438 * 11 10 9 15 15 H 1.08001 * 120.00531 * 359.97438 * 14 11 10 16 16 C 1.37881 * 119.99778 * 179.97438 * 14 11 10 17 17 N 1.31509 * 120.00264 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 119.99904 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46887 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46973 * 120.00175 * 18 16 14 21 21 H 1.48496 * 109.47029 * 240.00503 * 18 16 14 22 22 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 5 4 24 24 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 25 25 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 26 26 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 27 27 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 30 30 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 31 31 H 0.97006 * 119.99744 * 359.97438 * 9 7 6 32 32 H 1.09000 * 109.46784 * 299.99416 * 10 9 7 33 33 H 1.08993 * 109.47321 * 59.99709 * 10 9 7 34 34 H 1.08997 * 109.47499 * 60.00295 * 12 11 10 35 35 H 1.08998 * 109.47469 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.47386 * 300.00386 * 12 11 10 37 37 H 1.09000 * 109.47244 * 60.00055 * 13 11 10 38 38 H 1.09003 * 109.47362 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47060 * 300.00320 * 13 11 10 40 40 H 0.97000 * 120.00731 * 179.97438 * 17 16 14 41 41 H 1.07999 * 119.99934 * 180.25938 * 22 5 4 42 42 H 1.08001 * 120.00294 * 179.76453 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2865 -0.0027 1.4088 8 8 5.5019 -0.0049 2.3336 9 7 7.6124 -0.0027 1.6501 10 6 8.1060 -0.0058 3.0294 11 6 9.6360 -0.0044 3.0236 12 6 10.1443 -1.2514 2.2972 13 6 10.1422 1.2470 2.3036 14 6 10.1437 -0.0071 4.4424 15 1 9.4450 -0.0090 5.2660 16 6 11.5002 -0.0069 4.6892 17 7 12.3510 -0.0040 3.6864 18 14 12.1296 -0.0094 6.4481 19 1 10.9781 -0.0120 7.3858 20 1 12.9560 -1.2219 6.6763 21 1 12.9549 1.2031 6.6802 22 6 3.5805 -1.1972 0.0010 23 6 2.1982 -1.1972 0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 0.0001 29 1 6.1400 -0.8891 -0.5270 30 1 6.1401 0.8909 -0.5236 31 1 8.2400 -0.0013 0.9103 32 1 7.7442 0.8828 3.5467 33 1 7.7450 -0.8971 3.5424 34 1 9.7771 -1.2491 1.2710 35 1 11.2343 -1.2507 2.2934 36 1 9.7837 -2.1430 2.8101 37 1 9.7801 2.1354 2.8210 38 1 11.2322 1.2478 2.2990 39 1 9.7749 1.2493 1.2773 40 1 13.3054 -0.0035 3.8600 41 1 4.1205 -2.1325 0.0013 42 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315760722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:52 Heat of formation + Delta-G solvation = -50.129585 kcal Electronic energy + Delta-G solvation = -20729.180031 eV Core-core repulsion = 17672.532480 eV Total energy + Delta-G solvation = -3056.647551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03505 -39.87035 -38.08569 -34.96612 -34.66125 -32.76404 -31.77813 -30.58581 -27.55738 -27.55451 -27.07156 -25.57315 -23.59787 -22.15583 -21.18005 -20.58380 -18.37706 -17.63395 -17.24112 -16.77111 -16.57343 -16.23726 -15.88111 -15.78362 -14.96142 -14.70453 -14.60934 -14.41688 -14.25405 -13.98983 -13.61457 -13.34008 -13.14323 -13.10191 -12.74446 -12.71091 -12.59941 -12.57960 -12.24333 -12.14648 -11.97514 -11.78321 -11.48254 -11.26816 -10.85880 -10.67580 -10.40568 -9.91011 -9.77346 -9.35768 -8.03248 -6.18899 0.42516 0.55365 1.40181 1.44431 1.53809 1.75095 2.34821 2.50181 2.96063 3.20230 3.74423 3.93525 4.08825 4.14893 4.18477 4.31763 4.46966 4.51519 4.59274 4.66520 4.67158 4.72651 4.85938 4.88651 4.98619 5.02350 5.06610 5.12321 5.20002 5.23183 5.31885 5.38572 5.53186 5.62222 5.66885 5.67732 5.72020 5.73255 6.15948 6.17458 6.22154 6.43586 6.72896 6.85695 7.38873 7.48955 8.95718 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041701 B = 0.003117 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.277636 B = 8980.505244 C = 9160.785492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.132 4.132 4 C -0.118 4.118 5 C -0.085 4.085 6 C -0.094 4.094 7 C 0.504 3.496 8 O -0.589 6.589 9 N -0.712 5.712 10 C 0.149 3.851 11 C 0.052 3.948 12 C -0.122 4.122 13 C -0.121 4.121 14 C -0.529 4.529 15 H 0.042 0.958 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.944 3.056 19 H -0.277 1.277 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.118 4.118 23 C -0.133 4.133 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.410 0.590 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.040 0.960 35 H 0.062 0.938 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.260 0.740 41 H 0.127 0.873 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 0.022 -12.868 20.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.150 4.150 4 C -0.136 4.136 5 C -0.086 4.086 6 C -0.133 4.133 7 C 0.292 3.708 8 O -0.470 6.470 9 N -0.364 5.364 10 C 0.025 3.975 11 C 0.051 3.949 12 C -0.179 4.179 13 C -0.179 4.179 14 C -0.568 4.568 15 H 0.060 0.940 16 C -0.171 4.171 17 N -0.537 5.537 18 Si 0.771 3.229 19 H -0.201 1.201 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.136 4.136 23 C -0.150 4.150 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.155 0.845 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.248 0.752 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.145 0.855 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.773 0.021 -12.239 20.763 hybrid contribution 1.032 -0.003 1.098 1.507 sum -15.740 0.018 -11.140 19.284 Atomic orbital electron populations 1.20815 0.89340 1.03392 1.03156 1.20293 0.97593 0.93036 0.99142 1.21266 0.94007 0.98542 1.01220 1.21229 0.94983 0.97775 0.99654 1.19500 0.94371 0.93950 1.00750 1.20726 0.92570 1.07576 0.92463 1.21255 0.81941 0.75262 0.92341 1.90672 1.56676 1.51702 1.47965 1.46146 1.06871 1.73880 1.09464 1.21213 0.95917 0.98556 0.81821 1.18347 0.88163 0.93565 0.94815 1.21678 1.02847 0.96684 0.96729 1.21678 1.02838 0.96678 0.96734 1.21318 0.91920 1.51177 0.92388 0.94001 1.25440 0.97014 0.94696 0.99967 1.69904 1.02106 1.50743 1.30993 0.85724 0.78114 0.77590 0.81484 1.20145 1.20646 1.20638 1.21228 0.94982 0.97775 0.99650 1.21267 0.94006 0.98543 1.01221 0.89944 0.90975 0.90974 0.84469 0.85496 0.85540 0.85540 0.75243 0.94771 0.94764 0.94098 0.91891 0.96422 0.96419 0.91894 0.94109 0.92998 0.85513 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.84 16 2 C -0.10 -2.10 5.88 -19.86 -0.12 -2.22 16 3 C -0.13 -2.91 9.70 22.27 0.22 -2.69 16 4 C -0.12 -2.88 9.70 22.27 0.22 -2.67 16 5 C -0.09 -2.16 4.37 -19.87 -0.09 -2.24 16 6 C -0.09 -2.11 5.83 29.10 0.17 -1.94 16 7 C 0.50 16.68 7.82 87.66 0.69 17.36 16 8 O -0.59 -25.15 16.03 -3.02 -0.05 -25.20 16 9 N -0.71 -23.98 4.96 -463.07 -2.30 -26.28 16 10 C 0.15 6.40 4.50 86.38 0.39 6.79 16 11 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 12 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 13 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 14 C -0.53 -28.26 8.01 25.60 0.21 -28.05 16 15 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 16 C 0.03 1.51 5.15 84.66 0.44 1.95 16 17 N -0.90 -47.88 9.35 21.45 0.20 -47.68 16 18 Si 0.94 42.83 29.54 68.60 2.03 44.86 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C -0.12 -2.88 9.70 22.27 0.22 -2.67 16 23 C -0.13 -2.91 9.70 22.27 0.22 -2.69 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 26 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 27 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 29 H 0.13 2.16 8.09 -2.39 -0.02 2.14 16 30 H 0.13 2.16 8.09 -2.39 -0.02 2.14 16 31 H 0.41 11.63 6.16 -92.70 -0.57 11.06 16 32 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.04 1.47 6.86 -2.39 -0.02 1.46 16 35 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 36 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 39 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 40 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 41 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 42 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -64.92 341.61 4.70 -60.22 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.43 Total: 21.17 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 4.40 Total: -27.09 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -2.10 Total: -73.95 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -64.92 4.70 -60.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315760722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.090 kcal (2) G-P(sol) polarization free energy of solvation -64.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds