Wall clock time and date at job start Mon Mar 30 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.50701 * 109.46837 * 270.21259 * 7 6 5 9 9 O 1.21284 * 120.00148 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00199 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47478 * 180.02562 * 11 10 8 13 13 C 1.53009 * 109.47046 * 300.00431 * 12 11 10 14 14 C 1.53001 * 109.47011 * 59.99838 * 12 11 10 15 15 C 1.50693 * 109.47651 * 180.02562 * 12 11 10 16 16 H 1.08001 * 119.99659 * 359.97438 * 15 12 11 17 17 C 1.37870 * 120.00267 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00263 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 120.00150 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46928 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47038 * 119.99682 * 19 17 15 22 22 H 1.48502 * 109.47304 * 239.99738 * 19 17 15 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 30 30 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 31 31 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 32 32 H 0.97005 * 119.99713 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.47627 * 300.00787 * 11 10 8 34 34 H 1.09000 * 109.46977 * 60.00538 * 11 10 8 35 35 H 1.08999 * 109.46643 * 59.99416 * 13 12 11 36 36 H 1.08997 * 109.47176 * 179.97438 * 13 12 11 37 37 H 1.09000 * 109.46811 * 299.99719 * 13 12 11 38 38 H 1.08997 * 109.46659 * 60.00715 * 14 12 11 39 39 H 1.09006 * 109.46968 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47418 * 300.00509 * 14 12 11 41 41 H 0.97002 * 120.00258 * 180.02562 * 18 17 15 42 42 H 1.08001 * 119.99700 * 359.96970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5852 -2.9371 -1.4214 9 8 4.1916 -2.2543 -2.3432 10 7 5.2482 -4.0844 -1.6677 11 6 5.4918 -4.5075 -3.0489 12 6 6.2569 -5.8325 -3.0491 13 6 7.5940 -5.6495 -2.3282 14 6 5.4303 -6.8987 -2.3273 15 6 6.5081 -6.2675 -4.4698 16 1 6.1568 -5.6599 -5.2907 17 6 7.1854 -7.4416 -4.7218 18 7 7.6127 -8.1818 -3.7223 19 14 7.4962 -7.9812 -6.4831 20 1 6.9182 -6.9811 -7.4164 21 1 8.9586 -8.0898 -6.7167 22 1 6.8582 -9.3018 -6.7162 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 -0.0001 -0.0091 30 1 5.2866 -2.3718 0.5133 31 1 3.7450 -3.2618 0.5132 32 1 5.5633 -4.6304 -0.9304 33 1 4.5393 -4.6383 -3.5624 34 1 6.0804 -3.7478 -3.5632 35 1 7.4126 -5.3346 -1.3006 36 1 8.1389 -6.5935 -2.3279 37 1 8.1829 -4.8899 -2.8424 38 1 4.4778 -7.0292 -2.8409 39 1 5.9756 -7.8426 -2.3270 40 1 5.2490 -6.5840 -1.2997 41 1 8.0896 -9.0077 -3.8996 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315773852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:56 Heat of formation + Delta-G solvation = -34.306964 kcal Electronic energy + Delta-G solvation = -20803.121331 eV Core-core repulsion = 17747.159901 eV Total energy + Delta-G solvation = -3055.961430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.86179 -38.70176 -36.34763 -33.45362 -33.24486 -32.01246 -30.84774 -28.03732 -26.87778 -25.73380 -25.50693 -24.62749 -22.17987 -21.10277 -19.78722 -18.76583 -16.89983 -16.48584 -15.74458 -15.70944 -15.32800 -14.65917 -14.59427 -14.43815 -13.82917 -13.26577 -13.22530 -13.01016 -12.96864 -12.79781 -12.38369 -12.19756 -11.88080 -11.82260 -11.35636 -11.20653 -11.06904 -10.98153 -10.87269 -10.66365 -10.39162 -10.20919 -9.64074 -9.56139 -9.27843 -8.79939 -8.73161 -8.54568 -8.45084 -8.29767 -6.02865 -4.12830 1.35911 1.42610 3.09090 3.26716 3.35337 3.40039 3.60681 4.02093 4.40437 4.65764 4.76501 4.87371 5.10432 5.22823 5.24005 5.28440 5.32563 5.48871 5.51650 5.54109 5.65751 5.73293 6.06490 6.12130 6.24799 6.33443 6.46656 6.50779 6.56259 6.63673 6.78796 6.81697 6.93292 7.01383 7.03525 7.05253 7.35219 7.55083 7.69080 8.00412 8.07075 8.16314 8.38364 8.74253 8.88531 9.53179 10.98562 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036497 B = 0.003229 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.010813 B = 8669.778947 C = 8768.037105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.126 4.126 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.053 4.053 7 C -0.107 4.107 8 C 0.505 3.495 9 O -0.544 6.544 10 N -0.718 5.718 11 C 0.132 3.868 12 C 0.056 3.944 13 C -0.131 4.131 14 C -0.131 4.131 15 C -0.505 4.505 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.106 4.106 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.397 0.603 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.006 0.994 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.085 0.915 40 H 0.006 0.994 41 H 0.259 0.741 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.275 12.502 11.435 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.129 4.129 6 C -0.054 4.054 7 C -0.147 4.147 8 C 0.290 3.710 9 O -0.422 6.422 10 N -0.370 5.370 11 C 0.010 3.990 12 C 0.055 3.945 13 C -0.188 4.188 14 C -0.188 4.188 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.124 4.124 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.232 0.768 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.104 0.896 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.453 12.801 10.774 18.746 hybrid contribution 0.449 -0.646 -0.668 1.032 sum -8.005 12.155 10.106 17.719 Atomic orbital electron populations 1.20774 0.91369 1.02455 1.02346 1.19848 0.95924 0.93149 0.99957 1.20959 0.94274 0.97279 1.01863 1.21051 0.94285 0.97790 1.00371 1.20967 0.99728 0.92006 1.00219 1.19303 0.93498 0.93804 0.98784 1.20728 1.02010 0.95992 0.95941 1.20401 0.78547 0.81446 0.90639 1.90694 1.51281 1.54019 1.46220 1.46323 1.56802 1.23022 1.10809 1.21694 0.99599 0.97982 0.79738 1.18359 0.91423 0.88617 0.96114 1.21831 0.99656 1.02409 0.94946 1.21828 0.98952 1.03110 0.94942 1.21038 1.35931 1.06451 0.90988 0.92404 1.24880 0.95307 0.96303 0.97042 1.69812 1.38533 1.14137 1.30010 0.86522 0.77862 0.78530 0.85017 1.19749 1.21052 1.21055 1.20857 0.93444 0.97584 1.00516 0.91199 0.91638 0.91764 0.86439 0.86232 0.86295 0.88195 0.88233 0.76752 0.92842 0.92831 0.97478 0.89603 0.95465 0.95477 0.89600 0.97476 0.93069 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.09 -1.04 5.88 -104.62 -0.62 -1.66 16 3 C -0.13 -1.41 9.70 -39.58 -0.38 -1.80 16 4 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 5 C -0.11 -1.42 9.70 -39.58 -0.38 -1.81 16 6 C -0.05 -0.72 4.37 -104.63 -0.46 -1.17 16 7 C -0.11 -1.33 5.83 -29.04 -0.17 -1.50 16 8 C 0.50 8.67 7.82 -10.98 -0.09 8.58 16 9 O -0.54 -11.61 16.03 5.55 0.09 -11.52 16 10 N -0.72 -12.64 4.96 -60.30 -0.30 -12.93 16 11 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 12 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 13 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 14 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 15 C -0.51 -13.30 8.01 -34.45 -0.28 -13.57 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 18 N -0.89 -23.58 9.35 55.43 0.52 -23.06 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.11 -1.37 9.36 -39.58 -0.37 -1.74 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 26 H 0.06 0.47 8.09 -51.92 -0.42 0.05 16 27 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 30 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 31 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.40 6.20 6.16 -40.82 -0.25 5.94 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 36 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 40 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 41 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -29.85 341.62 -8.55 -38.40 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.62 Total: 4.88 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -2.37 Total: -16.65 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.22 Total: -36.00 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.85 -8.55 -38.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315773852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.097 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds