Wall clock time and date at job start Mon Mar 30 2020 02:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 C 1.50701 * 109.46837 * 270.21259 * 7 6 5 9 9 O 1.21284 * 120.00148 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00104 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00199 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47478 * 180.02562 * 11 10 8 13 13 C 1.53009 * 109.47046 * 300.00431 * 12 11 10 14 14 C 1.53001 * 109.47011 * 59.99838 * 12 11 10 15 15 C 1.50693 * 109.47651 * 180.02562 * 12 11 10 16 16 H 1.08001 * 119.99659 * 359.97438 * 15 12 11 17 17 C 1.37870 * 120.00267 * 180.02562 * 15 12 11 18 18 N 1.31513 * 120.00263 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 120.00150 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46928 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47038 * 119.99682 * 19 17 15 22 22 H 1.48502 * 109.47304 * 239.99738 * 19 17 15 23 23 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 25 25 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 26 26 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 27 27 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 29 29 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 30 30 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 31 31 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 32 32 H 0.97005 * 119.99713 * 0.02562 * 10 8 7 33 33 H 1.08997 * 109.47627 * 300.00787 * 11 10 8 34 34 H 1.09000 * 109.46977 * 60.00538 * 11 10 8 35 35 H 1.08999 * 109.46643 * 59.99416 * 13 12 11 36 36 H 1.08997 * 109.47176 * 179.97438 * 13 12 11 37 37 H 1.09000 * 109.46811 * 299.99719 * 13 12 11 38 38 H 1.08997 * 109.46659 * 60.00715 * 14 12 11 39 39 H 1.09006 * 109.46968 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47418 * 300.00509 * 14 12 11 41 41 H 0.97002 * 120.00258 * 180.02562 * 18 17 15 42 42 H 1.08001 * 119.99700 * 359.96970 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 6 4.5852 -2.9371 -1.4214 9 8 4.1916 -2.2543 -2.3432 10 7 5.2482 -4.0844 -1.6677 11 6 5.4918 -4.5075 -3.0489 12 6 6.2569 -5.8325 -3.0491 13 6 7.5940 -5.6495 -2.3282 14 6 5.4303 -6.8987 -2.3273 15 6 6.5081 -6.2675 -4.4698 16 1 6.1568 -5.6599 -5.2907 17 6 7.1854 -7.4416 -4.7218 18 7 7.6127 -8.1818 -3.7223 19 14 7.4962 -7.9812 -6.4831 20 1 6.9182 -6.9811 -7.4164 21 1 8.9586 -8.0898 -6.7167 22 1 6.8582 -9.3018 -6.7162 23 6 2.1981 -1.1970 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5140 27 1 1.6583 2.1326 0.0004 28 1 4.1204 2.1326 0.0010 29 1 5.3517 -0.0001 -0.0091 30 1 5.2866 -2.3718 0.5133 31 1 3.7450 -3.2618 0.5132 32 1 5.5633 -4.6304 -0.9304 33 1 4.5393 -4.6383 -3.5624 34 1 6.0804 -3.7478 -3.5632 35 1 7.4126 -5.3346 -1.3006 36 1 8.1389 -6.5935 -2.3279 37 1 8.1829 -4.8899 -2.8424 38 1 4.4778 -7.0292 -2.8409 39 1 5.9756 -7.8426 -2.3270 40 1 5.2490 -6.5840 -1.2997 41 1 8.0896 -9.0077 -3.8996 42 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315773852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:55 Heat of formation + Delta-G solvation = -50.108001 kcal Electronic energy + Delta-G solvation = -20803.806515 eV Core-core repulsion = 17747.159901 eV Total energy + Delta-G solvation = -3056.646615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04528 -39.86797 -38.08227 -34.96810 -34.38855 -33.00130 -32.56538 -29.13826 -27.70613 -27.55724 -27.37660 -26.30197 -23.11134 -22.21080 -21.01802 -20.56793 -18.37199 -17.63954 -17.38667 -16.76560 -16.72582 -16.40306 -15.88742 -15.52678 -14.97192 -14.71469 -14.61109 -14.42373 -14.03999 -13.97233 -13.77379 -13.30920 -13.12846 -13.10197 -12.78195 -12.74430 -12.62868 -12.58121 -12.24476 -12.14624 -11.92076 -11.82471 -11.48307 -11.27053 -10.87259 -10.67967 -10.40566 -9.91315 -9.65967 -9.44968 -8.03265 -6.18988 0.44752 0.53086 1.40239 1.44510 1.53887 1.74361 2.34684 2.50157 2.96083 3.20222 3.71226 3.92982 4.07105 4.12263 4.26918 4.40066 4.46221 4.50709 4.52240 4.65277 4.66490 4.72550 4.83445 4.84823 4.99644 5.01308 5.06536 5.12054 5.19924 5.21997 5.32916 5.38308 5.58737 5.61949 5.66835 5.67707 5.69034 5.73317 6.15846 6.17557 6.22084 6.43530 6.72282 6.85586 7.38213 7.48935 8.95660 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036497 B = 0.003229 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.010813 B = 8669.778947 C = 8768.037105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.132 4.132 4 C -0.125 4.125 5 C -0.130 4.130 6 C -0.074 4.074 7 C -0.095 4.095 8 C 0.505 3.495 9 O -0.589 6.589 10 N -0.711 5.711 11 C 0.149 3.851 12 C 0.051 3.949 13 C -0.121 4.121 14 C -0.121 4.121 15 C -0.530 4.530 16 H 0.042 0.958 17 C 0.029 3.971 18 N -0.898 5.898 19 Si 0.944 3.056 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.126 4.126 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.410 0.590 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.260 0.740 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.757 13.217 12.893 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.150 4.150 4 C -0.143 4.143 5 C -0.148 4.148 6 C -0.075 4.075 7 C -0.134 4.134 8 C 0.292 3.708 9 O -0.470 6.470 10 N -0.363 5.363 11 C 0.025 3.975 12 C 0.051 3.949 13 C -0.179 4.179 14 C -0.179 4.179 15 C -0.569 4.569 16 H 0.060 0.940 17 C -0.171 4.171 18 N -0.537 5.537 19 Si 0.771 3.229 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.144 4.144 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.248 0.752 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.930 13.506 12.267 20.314 hybrid contribution 0.568 -0.808 -1.120 1.493 sum -8.363 12.697 11.147 18.853 Atomic orbital electron populations 1.20816 0.89561 1.03765 1.02651 1.20242 0.97478 0.93043 0.99265 1.21325 0.94451 0.98195 1.01060 1.21396 0.94803 0.98391 0.99697 1.21227 1.00379 0.92473 1.00740 1.19505 0.93943 0.94332 0.99694 1.20737 1.03860 0.96339 0.92507 1.21228 0.76946 0.80293 0.92289 1.90675 1.52889 1.55207 1.48216 1.46143 1.57104 1.23636 1.09454 1.21216 0.97929 0.96627 0.81751 1.18352 0.92228 0.89515 0.94820 1.21675 0.98616 1.00881 0.96706 1.21671 0.97786 1.01698 0.96698 1.21321 1.36405 1.06757 0.92399 0.93984 1.25437 0.95258 0.96401 0.99997 1.69908 1.38540 1.14184 1.31083 0.85723 0.77719 0.77978 0.81486 1.20142 1.20641 1.20640 1.21108 0.93682 0.98438 1.01171 0.91263 0.90888 0.89992 0.84108 0.84137 0.85568 0.85458 0.85567 0.75239 0.94758 0.94749 0.94126 0.91898 0.96430 0.96447 0.91897 0.94129 0.93003 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.01 71.24 0.71 -1.06 16 2 C -0.10 -2.21 5.88 -19.87 -0.12 -2.33 16 3 C -0.13 -2.73 9.70 22.27 0.22 -2.52 16 4 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 5 C -0.13 -3.16 9.70 22.27 0.22 -2.95 16 6 C -0.07 -1.89 4.37 -19.87 -0.09 -1.98 16 7 C -0.10 -2.15 5.83 29.10 0.17 -1.98 16 8 C 0.50 16.72 7.82 87.66 0.69 17.40 16 9 O -0.59 -25.16 16.03 -3.04 -0.05 -25.21 16 10 N -0.71 -23.98 4.96 -463.07 -2.30 -26.28 16 11 C 0.15 6.39 4.50 86.38 0.39 6.78 16 12 C 0.05 2.38 0.50 -52.93 -0.03 2.35 16 13 C -0.12 -5.32 8.08 71.99 0.58 -4.74 16 14 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 15 C -0.53 -28.31 8.01 25.60 0.21 -28.10 16 16 H 0.04 2.31 7.74 -2.91 -0.02 2.29 16 17 C 0.03 1.52 5.15 84.65 0.44 1.96 16 18 N -0.90 -47.82 9.35 21.44 0.20 -47.62 16 19 Si 0.94 42.80 29.54 68.60 2.03 44.83 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C -0.13 -3.11 9.36 22.27 0.21 -2.90 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 26 H 0.08 0.99 8.09 -2.38 -0.02 0.97 16 27 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 29 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.13 2.18 8.09 -2.38 -0.02 2.16 16 31 H 0.13 2.18 8.09 -2.39 -0.02 2.16 16 32 H 0.41 11.63 6.16 -92.70 -0.57 11.06 16 33 H 0.03 1.58 8.14 -2.39 -0.02 1.57 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.46 6.86 -2.39 -0.02 1.45 16 36 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 3.08 6.07 -2.38 -0.01 3.07 16 40 H 0.04 1.46 6.86 -2.39 -0.02 1.45 16 41 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 42 H 0.12 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -64.90 341.62 4.70 -60.20 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.43 Total: 21.33 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 4.40 Total: -27.26 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -2.10 Total: -73.90 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -64.90 4.70 -60.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315773852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.093 kcal (2) G-P(sol) polarization free energy of solvation -64.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds