Wall clock time and date at job start Mon Mar 30 2020 02:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38362 * 119.92645 * 2 1 4 4 C 1.38360 * 120.29104 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.92541 * 180.02562 * 4 3 2 6 6 C 1.37957 * 120.14198 * 359.97342 * 4 3 2 7 7 C 1.39574 * 119.85596 * 0.02818 * 6 4 3 8 8 C 1.47846 * 120.14213 * 179.97438 * 7 6 4 9 9 O 1.21553 * 120.00154 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99557 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72375 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52998 * 109.46876 * 299.99984 * 12 11 10 14 14 C 1.53005 * 109.46795 * 60.00011 * 12 11 10 15 15 C 1.50700 * 109.47208 * 180.02562 * 12 11 10 16 16 H 1.08002 * 119.99770 * 359.97438 * 15 12 11 17 17 C 1.37876 * 119.99720 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00513 * 0.02562 * 17 15 12 19 19 Si 1.86809 * 119.99651 * 179.97438 * 17 15 12 20 20 H 1.48491 * 109.47115 * 89.99974 * 19 17 15 21 21 H 1.48509 * 109.46780 * 210.00159 * 19 17 15 22 22 H 1.48497 * 109.46888 * 329.99916 * 19 17 15 23 23 C 1.37955 * 119.92547 * 180.25920 * 2 1 3 24 24 H 1.09000 * 109.47687 * 89.99484 * 1 2 3 25 25 H 1.09005 * 109.47520 * 210.00190 * 1 2 3 26 26 H 1.09007 * 109.47420 * 329.99979 * 1 2 3 27 27 H 1.08004 * 119.85334 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.46601 * 269.97263 * 5 4 3 29 29 H 1.08996 * 109.47225 * 29.97172 * 5 4 3 30 30 H 1.09003 * 109.47149 * 149.97779 * 5 4 3 31 31 H 1.08008 * 120.06811 * 180.02562 * 6 4 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 33 33 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 34 34 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 35 35 H 1.08996 * 109.47009 * 60.00253 * 13 12 11 36 36 H 1.09004 * 109.46783 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.47156 * 300.00070 * 13 12 11 38 38 H 1.09000 * 109.47011 * 60.00556 * 14 12 11 39 39 H 1.09004 * 109.46658 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47069 * 299.99740 * 14 12 11 41 41 H 0.96999 * 120.00239 * 180.02562 * 18 17 15 42 42 H 1.08001 * 120.07457 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1991 0.0000 4 6 3.5808 1.2079 -0.0005 5 6 4.3243 2.5188 0.0001 6 6 4.2812 0.0193 -0.0005 7 6 3.5910 -1.1938 -0.0006 8 6 4.3351 -2.4713 -0.0011 9 8 5.5506 -2.4667 -0.0020 10 7 3.6656 -3.6411 -0.0006 11 6 4.4030 -4.9070 -0.0073 12 6 3.4131 -6.0737 -0.0122 13 6 2.5342 -6.0020 1.2380 14 6 2.5323 -5.9899 -1.2605 15 6 4.1716 -7.3759 -0.0185 16 1 5.2516 -7.3717 -0.0193 17 6 3.4867 -8.5725 -0.0231 18 7 2.1716 -8.5776 -0.0226 19 14 4.4270 -10.1867 -0.0316 20 1 4.6777 -10.6208 1.3662 21 1 3.6275 -11.2215 -0.7355 22 1 5.7230 -10.0010 -0.7323 23 6 2.1952 -1.1956 -0.0054 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6537 2.1324 -0.0004 28 1 4.5035 2.8352 -1.0275 29 1 3.7294 3.2736 0.5142 30 1 5.2777 2.3955 0.5138 31 1 5.3612 0.0276 -0.0005 32 1 2.6956 -3.6448 -0.0003 33 1 5.0292 -4.9581 -0.8981 34 1 5.0305 -4.9667 0.8819 35 1 1.9856 -5.0602 1.2429 36 1 1.8287 -6.8330 1.2342 37 1 3.1617 -6.0617 2.1272 38 1 3.1586 -6.0410 -2.1512 39 1 1.8269 -6.8209 -1.2638 40 1 1.9837 -5.0481 -1.2555 41 1 1.6898 -9.4195 -0.0256 42 1 1.6552 -2.1309 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315791442.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:13 Heat of formation + Delta-G solvation = -35.076393 kcal Electronic energy + Delta-G solvation = -21065.402920 eV Core-core repulsion = 18009.408125 eV Total energy + Delta-G solvation = -3055.994795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.10296 -38.48906 -36.33676 -33.84981 -33.22205 -32.15668 -30.69798 -27.55583 -26.77379 -25.74717 -25.73694 -25.11567 -23.09508 -20.76011 -19.87046 -18.80939 -17.30736 -16.25931 -15.78565 -15.70652 -14.81560 -14.69120 -14.65792 -14.05582 -14.01849 -13.37822 -13.30497 -13.00561 -12.88596 -12.81855 -12.68452 -12.17791 -12.09354 -11.63374 -11.58504 -11.36275 -11.22063 -11.10399 -10.86946 -10.69772 -10.39577 -10.20781 -9.64519 -9.63101 -9.26843 -8.89199 -8.79849 -8.67868 -8.44613 -8.30053 -6.02563 -4.12597 0.90509 1.26877 3.07154 3.28407 3.35317 3.39220 3.70198 3.93967 4.40008 4.60684 4.65075 4.81715 5.06510 5.18217 5.20746 5.24271 5.36613 5.42011 5.47939 5.48922 5.65363 5.70123 5.92134 6.01870 6.20883 6.32213 6.33154 6.40904 6.45237 6.50623 6.76887 6.80967 6.84337 6.93951 7.01100 7.01445 7.34453 7.54677 7.68878 7.99925 8.03507 8.14603 8.37730 8.67061 8.88076 9.53252 10.98920 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031688 B = 0.003804 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.405285 B = 7359.575713 C = 8041.298431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.103 4.103 4 C -0.095 4.095 5 C -0.112 4.112 6 C -0.070 4.070 7 C -0.117 4.117 8 C 0.546 3.454 9 O -0.549 6.549 10 N -0.710 5.710 11 C 0.131 3.869 12 C 0.055 3.945 13 C -0.131 4.131 14 C -0.131 4.131 15 C -0.506 4.506 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.886 5.886 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.093 4.093 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.397 0.603 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.005 0.995 36 H 0.086 0.914 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.086 0.914 40 H 0.005 0.995 41 H 0.260 0.740 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 18.371 0.001 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.091 4.091 3 C -0.121 4.121 4 C -0.095 4.095 5 C -0.169 4.169 6 C -0.089 4.089 7 C -0.120 4.120 8 C 0.332 3.668 9 O -0.429 6.429 10 N -0.360 5.360 11 C 0.008 3.992 12 C 0.055 3.945 13 C -0.189 4.189 14 C -0.188 4.188 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.112 4.112 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.234 0.766 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.105 0.895 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.372 18.182 -0.002 18.492 hybrid contribution -0.017 -0.987 -0.007 0.987 sum -3.389 17.195 -0.009 17.526 Atomic orbital electron populations 1.20804 0.90763 1.03001 1.02541 1.19827 0.96288 0.92763 1.00202 1.21050 0.93488 0.97535 1.00064 1.19859 0.93772 0.95282 1.00550 1.20778 1.00076 0.93622 1.02417 1.21140 1.00613 0.90385 0.96765 1.20118 0.93612 0.94114 1.04152 1.18286 0.87325 0.83884 0.77313 1.90728 1.13473 1.87742 1.50961 1.46263 1.10717 1.06257 1.72772 1.21770 0.95376 0.81345 1.00673 1.18368 0.91948 0.91354 0.92858 1.21835 1.00248 0.99168 0.97603 1.21834 1.00244 0.99152 0.97621 1.20984 0.92896 0.89712 1.50851 0.92391 1.24878 0.94884 0.98966 0.94768 1.69800 1.05901 1.26174 1.50600 0.86565 0.79934 0.83235 0.78108 1.20706 1.21268 1.19886 1.21255 0.93060 0.98156 0.98742 0.91005 0.91153 0.91532 0.85906 0.91110 0.91546 0.91315 0.84807 0.76626 0.92528 0.92520 0.97611 0.89524 0.95374 0.95370 0.89527 0.97607 0.93002 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.09 -1.01 5.87 -104.68 -0.61 -1.62 16 3 C -0.10 -1.07 9.34 -39.49 -0.37 -1.44 16 4 C -0.09 -1.06 5.87 -104.68 -0.61 -1.67 16 5 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 6 C -0.07 -0.97 9.24 -39.19 -0.36 -1.34 16 7 C -0.12 -1.80 5.87 -104.97 -0.62 -2.41 16 8 C 0.55 10.25 7.77 -12.33 -0.10 10.15 16 9 O -0.55 -12.05 16.35 5.32 0.09 -11.97 16 10 N -0.71 -13.27 4.91 -61.25 -0.30 -13.57 16 11 C 0.13 2.84 4.50 -4.04 -0.02 2.82 16 12 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 13 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 14 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 15 C -0.51 -13.31 8.01 -34.44 -0.28 -13.58 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.89 -23.58 9.35 55.43 0.52 -23.06 16 19 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C -0.09 -1.22 9.19 -39.19 -0.36 -1.58 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.07 0.46 8.08 -51.92 -0.42 0.04 16 27 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 30 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.13 1.88 7.65 -52.48 -0.40 1.48 16 32 H 0.40 6.70 4.20 -40.82 -0.17 6.53 16 33 H 0.06 1.29 8.14 -51.92 -0.42 0.86 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 36 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 40 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 41 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 42 H 0.13 1.54 6.41 -52.49 -0.34 1.21 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -29.06 338.40 -8.23 -37.28 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.43 Total: 4.75 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.18 Total: -14.28 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.22 Total: -36.63 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.06 -8.23 -37.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315791442.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.206 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds