Wall clock time and date at job start Mon Mar 30 2020 02:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99935 * 2 1 4 4 C 1.38213 * 120.00039 * 180.28115 * 3 2 1 5 5 C 1.38257 * 119.99945 * 359.74428 * 4 3 2 6 6 C 1.38211 * 120.00115 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00166 * 179.75270 * 2 1 3 8 8 C 1.50703 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.47064 * 84.72709 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47143 * 300.00028 * 13 12 11 15 15 C 1.52996 * 109.47131 * 59.99859 * 13 12 11 16 16 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 13 12 19 19 N 1.31520 * 119.99996 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 120.00227 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.46873 * 60.00019 * 20 18 16 22 22 H 1.48503 * 109.47134 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46938 * 300.00027 * 20 18 16 24 24 H 1.09004 * 109.46714 * 270.24685 * 1 2 3 25 25 H 1.09001 * 109.47281 * 30.24784 * 1 2 3 26 26 H 1.09001 * 109.47263 * 150.25366 * 1 2 3 27 27 H 1.08001 * 120.00281 * 0.04654 * 3 2 1 28 28 H 1.07998 * 120.00425 * 179.77172 * 4 3 2 29 29 H 1.07998 * 120.00075 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.00450 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47152 * 324.72801 * 8 7 2 32 32 H 1.09001 * 109.46980 * 204.72902 * 8 7 2 33 33 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 34 34 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 35 35 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 36 36 H 1.09004 * 109.46930 * 59.99935 * 14 13 12 37 37 H 1.09000 * 109.47312 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47067 * 300.00018 * 14 13 12 39 39 H 1.09001 * 109.46997 * 60.00426 * 15 13 12 40 40 H 1.09004 * 109.47552 * 180.02562 * 15 13 12 41 41 H 1.08996 * 109.47452 * 300.00000 * 15 13 12 42 42 H 0.96993 * 120.00405 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0052 8 6 1.4446 -2.5020 0.0114 9 6 1.0798 -2.8782 -1.4016 10 8 1.4006 -2.1577 -2.3229 11 7 0.3980 -4.0158 -1.6414 12 6 0.0439 -4.3817 -3.0151 13 6 -0.7211 -5.7067 -3.0088 14 6 0.1585 -6.8007 -2.4002 15 6 -1.9960 -5.5555 -2.1765 16 6 -1.0849 -6.0835 -4.4218 17 1 -0.7993 -5.4418 -5.2423 18 6 -1.7831 -7.2468 -4.6671 19 7 -2.1314 -8.0279 -3.6680 20 14 -2.2346 -7.7135 -6.4187 21 1 -0.9972 -7.8607 -7.2263 22 1 -2.9771 -8.9995 -6.4126 23 1 -3.0879 -6.6515 -7.0096 24 1 -0.3633 0.0044 1.0277 25 1 -0.3634 0.8878 -0.5177 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6583 2.1327 0.0008 28 1 4.1204 2.1326 -0.0096 29 1 5.3516 0.0000 -0.0106 30 1 4.1206 -2.1322 -0.0005 31 1 0.5365 -2.3945 0.6047 32 1 2.0715 -3.2814 0.4446 33 1 0.1419 -4.5922 -0.9046 34 1 -0.5831 -3.6026 -3.4485 35 1 0.9522 -4.4891 -3.6081 36 1 0.4220 -6.5283 -1.3781 37 1 -0.3867 -7.7445 -2.3953 38 1 1.0668 -6.9084 -2.9931 39 1 -2.6227 -4.7762 -2.6101 40 1 -2.5409 -6.4995 -2.1716 41 1 -1.7325 -5.2832 -1.1545 42 1 -2.6229 -8.8461 -3.8405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315792167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:59 Heat of formation + Delta-G solvation = -32.172942 kcal Electronic energy + Delta-G solvation = -21131.910080 eV Core-core repulsion = 18076.041188 eV Total energy + Delta-G solvation = -3055.868892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00216 -38.63287 -36.33225 -33.29901 -33.21204 -32.15767 -30.84636 -28.13886 -26.70330 -25.73475 -25.48888 -24.59226 -22.12865 -21.10565 -19.84834 -18.77261 -16.90052 -16.42365 -15.87866 -15.74087 -15.26399 -14.68986 -14.53763 -14.48497 -13.76562 -13.18771 -13.11008 -12.98311 -12.97453 -12.76155 -12.25499 -12.19106 -11.94953 -11.87873 -11.35088 -11.19295 -10.96478 -10.93029 -10.84104 -10.73064 -10.38728 -10.20984 -9.63929 -9.56418 -9.27867 -8.81419 -8.73771 -8.51328 -8.44552 -8.29727 -6.02568 -4.12719 1.36770 1.43132 3.08434 3.29851 3.34050 3.37595 3.61879 4.01167 4.40405 4.68528 4.79992 4.96687 5.01498 5.24070 5.25519 5.29247 5.35405 5.50032 5.56425 5.62997 5.71902 5.84665 6.06998 6.19298 6.24679 6.33187 6.48493 6.50564 6.51662 6.68043 6.78528 6.81520 6.93123 7.01235 7.04265 7.04899 7.35038 7.54994 7.68818 8.00355 8.06756 8.16158 8.38319 8.73959 8.88102 9.53126 10.98802 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036814 B = 0.003461 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.394056 B = 8087.984962 C = 8100.878001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.104 4.104 7 C -0.059 4.059 8 C -0.108 4.108 9 C 0.505 3.495 10 O -0.543 6.543 11 N -0.719 5.719 12 C 0.133 3.867 13 C 0.056 3.944 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.507 4.507 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.887 5.887 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.397 0.603 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.006 0.994 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.006 0.994 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.977 12.017 11.350 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.145 4.145 6 C -0.123 4.123 7 C -0.060 4.060 8 C -0.148 4.148 9 C 0.290 3.710 10 O -0.420 6.420 11 N -0.370 5.370 12 C 0.010 3.990 13 C 0.055 3.945 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.545 4.545 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.232 0.768 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.025 0.975 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.025 0.975 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.089 12.336 10.692 17.797 hybrid contribution -0.318 -0.598 -0.673 0.954 sum 6.771 11.738 10.020 16.853 Atomic orbital electron populations 1.20836 0.91382 1.03328 1.01865 1.19711 0.95967 0.92584 0.98567 1.20957 0.94268 0.97255 1.01554 1.21065 0.94297 0.97874 1.00704 1.21036 0.99612 0.92519 1.01379 1.20982 0.93461 0.98193 0.99621 1.19188 0.93429 0.93325 1.00017 1.20744 1.01829 0.96132 0.96089 1.20379 0.78572 0.81540 0.90520 1.90695 1.54046 1.51397 1.45899 1.46328 1.56329 1.23006 1.11328 1.21693 0.98789 0.98546 0.79965 1.18347 0.91474 0.88590 0.96049 1.21829 0.98724 1.03159 0.95104 1.21825 0.99638 1.02526 0.94816 1.20959 1.35613 1.06529 0.91440 0.92525 1.24877 0.95460 0.96143 0.96995 1.69791 1.39272 1.13259 1.30194 0.86634 0.78625 0.77649 0.84966 1.20275 1.21320 1.20269 0.91235 0.91504 0.91282 0.86304 0.86400 0.86318 0.86240 0.88164 0.88318 0.76767 0.92838 0.92844 0.97492 0.89611 0.95481 0.95480 0.89611 0.97485 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.22 36.00 0.33 -1.02 16 2 C -0.07 -0.89 5.88 -104.63 -0.62 -1.51 16 3 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 4 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 5 C -0.13 -1.47 10.05 -39.58 -0.40 -1.86 16 6 C -0.10 -1.33 9.68 -39.58 -0.38 -1.71 16 7 C -0.06 -0.80 4.37 -104.62 -0.46 -1.26 16 8 C -0.11 -1.36 5.15 -29.03 -0.15 -1.51 16 9 C 0.50 8.60 7.02 -10.98 -0.08 8.52 16 10 O -0.54 -11.45 16.03 5.56 0.09 -11.36 16 11 N -0.72 -12.55 4.96 -60.30 -0.30 -12.85 16 12 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 13 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 14 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 15 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 16 C -0.51 -13.29 8.01 -34.44 -0.28 -13.57 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.89 -23.55 9.36 55.43 0.52 -23.04 16 20 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 26 H 0.07 0.90 6.15 -51.93 -0.32 0.58 16 27 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.10 1.06 7.01 -51.93 -0.36 0.69 16 32 H 0.10 1.03 8.05 -51.93 -0.42 0.61 16 33 H 0.40 6.16 6.16 -40.82 -0.25 5.91 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 37 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 41 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 42 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -29.60 336.96 -8.49 -38.09 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -6.46 Total: 5.41 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.39 Total: -17.04 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.22 Total: -35.88 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.60 -8.49 -38.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315792167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.917 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds