Wall clock time and date at job start Mon Mar 30 2020 02:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99935 * 2 1 4 4 C 1.38213 * 120.00039 * 180.28115 * 3 2 1 5 5 C 1.38257 * 119.99945 * 359.74428 * 4 3 2 6 6 C 1.38211 * 120.00115 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00166 * 179.75270 * 2 1 3 8 8 C 1.50703 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.47064 * 84.72709 * 8 7 2 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.47143 * 300.00028 * 13 12 11 15 15 C 1.52996 * 109.47131 * 59.99859 * 13 12 11 16 16 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 13 12 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 13 12 19 19 N 1.31520 * 119.99996 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 120.00227 * 179.97438 * 18 16 13 21 21 H 1.48496 * 109.46873 * 60.00019 * 20 18 16 22 22 H 1.48503 * 109.47134 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46938 * 300.00027 * 20 18 16 24 24 H 1.09004 * 109.46714 * 270.24685 * 1 2 3 25 25 H 1.09001 * 109.47281 * 30.24784 * 1 2 3 26 26 H 1.09001 * 109.47263 * 150.25366 * 1 2 3 27 27 H 1.08001 * 120.00281 * 0.04654 * 3 2 1 28 28 H 1.07998 * 120.00425 * 179.77172 * 4 3 2 29 29 H 1.07998 * 120.00075 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.00450 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.47152 * 324.72801 * 8 7 2 32 32 H 1.09001 * 109.46980 * 204.72902 * 8 7 2 33 33 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 34 34 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 35 35 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 36 36 H 1.09004 * 109.46930 * 59.99935 * 14 13 12 37 37 H 1.09000 * 109.47312 * 179.97438 * 14 13 12 38 38 H 1.09002 * 109.47067 * 300.00018 * 14 13 12 39 39 H 1.09001 * 109.46997 * 60.00426 * 15 13 12 40 40 H 1.09004 * 109.47552 * 180.02562 * 15 13 12 41 41 H 1.08996 * 109.47452 * 300.00000 * 15 13 12 42 42 H 0.96993 * 120.00405 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0052 8 6 1.4446 -2.5020 0.0114 9 6 1.0798 -2.8782 -1.4016 10 8 1.4006 -2.1577 -2.3229 11 7 0.3980 -4.0158 -1.6414 12 6 0.0439 -4.3817 -3.0151 13 6 -0.7211 -5.7067 -3.0088 14 6 0.1585 -6.8007 -2.4002 15 6 -1.9960 -5.5555 -2.1765 16 6 -1.0849 -6.0835 -4.4218 17 1 -0.7993 -5.4418 -5.2423 18 6 -1.7831 -7.2468 -4.6671 19 7 -2.1314 -8.0279 -3.6680 20 14 -2.2346 -7.7135 -6.4187 21 1 -0.9972 -7.8607 -7.2263 22 1 -2.9771 -8.9995 -6.4126 23 1 -3.0879 -6.6515 -7.0096 24 1 -0.3633 0.0044 1.0277 25 1 -0.3634 0.8878 -0.5177 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6583 2.1327 0.0008 28 1 4.1204 2.1326 -0.0096 29 1 5.3516 0.0000 -0.0106 30 1 4.1206 -2.1322 -0.0005 31 1 0.5365 -2.3945 0.6047 32 1 2.0715 -3.2814 0.4446 33 1 0.1419 -4.5922 -0.9046 34 1 -0.5831 -3.6026 -3.4485 35 1 0.9522 -4.4891 -3.6081 36 1 0.4220 -6.5283 -1.3781 37 1 -0.3867 -7.7445 -2.3953 38 1 1.0668 -6.9084 -2.9931 39 1 -2.6227 -4.7762 -2.6101 40 1 -2.5409 -6.4995 -2.1716 41 1 -1.7325 -5.2832 -1.1545 42 1 -2.6229 -8.8461 -3.8405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315792167.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:59 Heat of formation + Delta-G solvation = -47.912541 kcal Electronic energy + Delta-G solvation = -21132.592600 eV Core-core repulsion = 18076.041188 eV Total energy + Delta-G solvation = -3056.551412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15994 -39.82940 -38.05663 -34.95948 -34.21831 -33.14278 -32.59680 -29.21065 -27.69891 -27.55354 -27.33520 -26.22520 -23.07737 -22.18482 -21.09330 -20.57119 -18.37132 -17.62707 -17.35848 -16.92824 -16.64365 -16.35371 -15.84327 -15.64136 -15.02356 -14.72600 -14.57322 -14.28670 -13.99828 -13.95270 -13.76900 -13.28632 -13.14053 -13.07916 -12.88122 -12.82435 -12.63523 -12.62916 -12.23749 -12.13650 -11.82888 -11.78854 -11.47693 -11.26426 -10.86730 -10.68799 -10.39569 -9.90603 -9.65586 -9.42703 -8.02550 -6.18385 0.45859 0.54174 1.43482 1.44673 1.51278 1.74737 2.35340 2.50851 2.96481 3.20853 3.72300 3.93829 4.07347 4.15285 4.21128 4.38293 4.45545 4.47781 4.52485 4.60144 4.72748 4.73728 4.81127 4.86441 4.95839 5.01289 5.06880 5.12292 5.20262 5.21627 5.32748 5.38664 5.60625 5.62544 5.64989 5.66906 5.68122 5.77025 6.16247 6.18304 6.22448 6.43841 6.72801 6.85777 7.38758 7.49327 8.96035 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036814 B = 0.003461 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.394056 B = 8087.984962 C = 8100.878001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C -0.134 4.134 4 C -0.125 4.125 5 C -0.137 4.137 6 C -0.121 4.121 7 C -0.083 4.083 8 C -0.097 4.097 9 C 0.506 3.494 10 O -0.586 6.586 11 N -0.712 5.712 12 C 0.150 3.850 13 C 0.052 3.948 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.532 4.532 17 H 0.042 0.958 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.943 3.057 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.277 1.277 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.410 0.590 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.039 0.961 37 H 0.062 0.938 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.510 12.719 12.828 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.152 4.152 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.139 4.139 7 C -0.084 4.084 8 C -0.136 4.136 9 C 0.294 3.706 10 O -0.467 6.467 11 N -0.364 5.364 12 C 0.026 3.974 13 C 0.051 3.949 14 C -0.178 4.178 15 C -0.178 4.178 16 C -0.570 4.570 17 H 0.060 0.940 18 C -0.171 4.171 19 N -0.537 5.537 20 Si 0.770 3.230 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.203 1.203 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.247 0.753 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.619 13.027 12.203 19.408 hybrid contribution -0.441 -0.749 -1.130 1.426 sum 7.177 12.278 11.073 18.024 Atomic orbital electron populations 1.20836 0.90724 1.02558 1.03052 1.20018 0.96778 0.93082 0.98898 1.21280 0.94910 0.97722 1.01301 1.21442 0.94343 0.98934 0.99589 1.21384 1.00900 0.92352 1.00815 1.21264 0.93562 0.99242 0.99828 1.19393 0.94000 0.93753 1.01228 1.20743 1.03347 0.96696 0.92841 1.21155 0.77070 0.80322 0.92054 1.90675 1.55562 1.52587 1.47838 1.46147 1.56573 1.23689 1.09992 1.21210 0.97228 0.97099 0.81910 1.18347 0.92228 0.89540 0.94794 1.21670 0.97635 1.01692 0.96827 1.21663 0.98687 1.00920 0.96519 1.21265 1.36141 1.06743 0.92871 0.93962 1.25436 0.95524 0.96182 0.99912 1.69893 1.39302 1.13266 1.31249 0.85844 0.78206 0.77403 0.81526 1.20326 1.20706 1.20283 0.89030 0.91138 0.93120 0.84515 0.83900 0.84189 0.85291 0.85806 0.85671 0.75302 0.94703 0.94787 0.94165 0.91909 0.96492 0.96438 0.91921 0.94150 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 9.22 71.24 0.66 -1.83 16 2 C -0.09 -2.17 5.88 -19.87 -0.12 -2.28 16 3 C -0.13 -2.94 9.70 22.27 0.22 -2.73 16 4 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 5 C -0.14 -2.89 10.05 22.27 0.22 -2.67 16 6 C -0.12 -2.89 9.68 22.27 0.22 -2.67 16 7 C -0.08 -2.12 4.37 -19.86 -0.09 -2.21 16 8 C -0.10 -2.23 5.15 29.10 0.15 -2.08 16 9 C 0.51 16.70 7.02 87.66 0.62 17.32 16 10 O -0.59 -24.80 16.03 -3.03 -0.05 -24.85 16 11 N -0.71 -23.93 4.96 -463.06 -2.30 -26.23 16 12 C 0.15 6.39 4.50 86.38 0.39 6.78 16 13 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 14 C -0.12 -5.30 8.08 71.98 0.58 -4.71 16 15 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 16 C -0.53 -28.30 8.01 25.60 0.21 -28.09 16 17 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 18 C 0.03 1.55 5.15 84.65 0.44 1.98 16 19 N -0.90 -47.81 9.36 21.45 0.20 -47.60 16 20 Si 0.94 42.70 29.54 68.60 2.03 44.73 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 26 H 0.05 1.27 6.15 -2.39 -0.01 1.25 16 27 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 31 H 0.12 2.25 7.01 -2.39 -0.02 2.24 16 32 H 0.13 2.20 8.05 -2.39 -0.02 2.18 16 33 H 0.41 11.64 6.16 -92.71 -0.57 11.07 16 34 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.45 6.86 -2.38 -0.02 1.43 16 37 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 3.06 6.07 -2.39 -0.01 3.05 16 41 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 42 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 Total: -1.00 -64.33 336.96 4.58 -59.75 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.43 Total: 22.02 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 4.26 Total: -27.83 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -2.10 Total: -73.83 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -64.33 4.58 -59.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315792167.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.841 kcal (2) G-P(sol) polarization free energy of solvation -64.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds