Wall clock time and date at job start Mon Mar 30 2020 02:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37957 * 120.06993 * 2 1 4 4 C 1.38360 * 120.14382 * 179.74655 * 3 2 1 5 5 C 1.38366 * 120.29302 * 0.27966 * 4 3 2 6 6 C 1.37955 * 120.14134 * 359.95571 * 5 4 3 7 7 C 1.50704 * 120.07323 * 180.02562 * 6 5 4 8 8 C 1.39576 * 120.07437 * 180.23300 * 2 1 3 9 9 C 1.47837 * 120.14496 * 0.02562 * 8 2 1 10 10 O 1.21555 * 119.99948 * 270.22938 * 9 8 2 11 11 N 1.34783 * 120.00157 * 90.23113 * 9 8 2 12 12 C 1.46502 * 119.99911 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47171 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47125 * 299.99589 * 13 12 11 15 15 C 1.53001 * 109.47449 * 59.99370 * 13 12 11 16 16 C 1.50699 * 109.47438 * 179.97438 * 13 12 11 17 17 H 1.08004 * 119.99355 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00377 * 179.97438 * 16 13 12 19 19 N 1.31518 * 119.99978 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00336 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47060 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47194 * 120.00334 * 20 18 16 23 23 H 1.48498 * 109.47072 * 240.00476 * 20 18 16 24 24 H 1.08994 * 109.46799 * 89.99624 * 1 2 3 25 25 H 1.08994 * 109.46726 * 209.99869 * 1 2 3 26 26 H 1.08995 * 109.47128 * 329.99791 * 1 2 3 27 27 H 1.08002 * 119.93252 * 0.03110 * 3 2 1 28 28 H 1.08001 * 119.85601 * 180.25892 * 4 3 2 29 29 H 1.07992 * 119.92771 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.47190 * 90.00112 * 7 6 5 31 31 H 1.09004 * 109.47366 * 210.00157 * 7 6 5 32 32 H 1.09001 * 109.46832 * 330.00176 * 7 6 5 33 33 H 0.96995 * 120.00159 * 359.97438 * 11 9 8 34 34 H 1.09000 * 109.46711 * 299.99565 * 12 11 9 35 35 H 1.09000 * 109.47191 * 59.99407 * 12 11 9 36 36 H 1.08999 * 109.46724 * 59.99925 * 14 13 12 37 37 H 1.08996 * 109.47511 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.46885 * 300.00442 * 14 13 12 39 39 H 1.09003 * 109.46341 * 60.00184 * 15 13 12 40 40 H 1.08998 * 109.47501 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.47275 * 300.00611 * 15 13 12 42 42 H 0.96993 * 120.00020 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5819 1.1957 0.0053 5 6 4.2814 0.0019 0.0048 6 6 3.6023 -1.1989 -0.0001 7 6 4.3657 -2.4983 -0.0001 8 6 2.2065 -1.2078 -0.0049 9 6 1.4722 -2.4910 -0.0107 10 8 1.1663 -3.0209 1.0396 11 7 1.1420 -3.0732 -1.1806 12 6 0.4139 -4.3445 -1.1862 13 6 0.1668 -4.7842 -2.6307 14 6 -0.6606 -3.7194 -3.3535 15 6 1.5075 -4.9611 -3.3464 16 6 -0.5816 -6.0922 -2.6366 17 1 -0.8542 -6.5625 -1.7033 18 6 -0.9193 -6.6879 -3.8332 19 7 -0.5878 -6.1149 -4.9697 20 14 -1.8477 -8.3089 -3.8405 21 1 -2.1000 -8.7411 -2.4424 22 1 -3.1428 -8.1344 -4.5456 23 1 -1.0386 -9.3395 -4.5393 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6583 2.1292 0.0005 28 1 4.1183 2.1331 0.0095 29 1 5.3613 0.0102 0.0085 30 1 4.5461 -2.8137 1.0276 31 1 3.7843 -3.2614 -0.5176 32 1 5.3189 -2.3596 -0.5102 33 1 1.3858 -2.6502 -2.0187 34 1 1.0036 -5.1032 -0.6717 35 1 -0.5410 -4.2185 -0.6759 36 1 -0.1189 -2.7736 -3.3493 37 1 -0.8370 -4.0329 -4.3824 38 1 -1.6157 -3.5934 -2.8436 39 1 2.0969 -5.7197 -2.8314 40 1 1.3315 -5.2749 -4.3753 41 1 2.0492 -4.0153 -3.3421 42 1 -0.8250 -6.5342 -5.8115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315820598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:17 Heat of formation + Delta-G solvation = -33.943299 kcal Electronic energy + Delta-G solvation = -21636.413268 eV Core-core repulsion = 18580.467607 eV Total energy + Delta-G solvation = -3055.945660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.22885 -38.29903 -36.29517 -33.63543 -33.28014 -32.06730 -30.71912 -27.78981 -26.70109 -25.73326 -25.67239 -24.98917 -22.81332 -20.74578 -20.04410 -18.81686 -17.50075 -16.02087 -15.94350 -15.52683 -15.22544 -14.70251 -14.14237 -14.08831 -13.87601 -13.22411 -13.18483 -13.04574 -12.91809 -12.69624 -12.61867 -12.20211 -11.91465 -11.65683 -11.43653 -11.39032 -11.19835 -11.07826 -10.87813 -10.67310 -10.39748 -10.21435 -9.64532 -9.63925 -9.26318 -8.78660 -8.76391 -8.64034 -8.47232 -8.32964 -6.02848 -4.12943 1.14336 1.29454 2.98538 3.26676 3.35392 3.39754 3.54164 3.81248 4.39760 4.70419 4.75245 4.84232 5.05412 5.21422 5.24034 5.34168 5.47571 5.57591 5.63028 5.66876 5.76831 5.83788 6.05521 6.20965 6.21779 6.30228 6.35724 6.42137 6.50392 6.52252 6.75904 6.82588 6.88131 6.93038 7.00648 7.01063 7.34318 7.54841 7.68856 7.99997 8.02919 8.14403 8.37502 8.65688 8.88035 9.53050 10.98568 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029658 B = 0.004271 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.869276 B = 6554.507331 C = 6730.704698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.047 4.047 3 C -0.131 4.131 4 C -0.103 4.103 5 C -0.131 4.131 6 C -0.047 4.047 7 C -0.123 4.123 8 C -0.121 4.121 9 C 0.556 3.444 10 O -0.545 6.545 11 N -0.708 5.708 12 C 0.130 3.870 13 C 0.056 3.944 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.505 4.505 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.399 0.601 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.006 0.994 37 H 0.086 0.914 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.086 0.914 41 H 0.006 0.994 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.691 13.473 5.617 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.048 4.048 3 C -0.149 4.149 4 C -0.121 4.121 5 C -0.149 4.149 6 C -0.048 4.048 7 C -0.179 4.179 8 C -0.125 4.125 9 C 0.341 3.659 10 O -0.424 6.424 11 N -0.358 5.358 12 C 0.008 3.992 13 C 0.055 3.945 14 C -0.188 4.188 15 C -0.189 4.189 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.235 0.765 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.025 0.975 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.425 13.014 6.154 16.198 hybrid contribution -0.350 -0.609 -0.456 0.838 sum 7.075 12.405 5.698 15.375 Atomic orbital electron populations 1.20901 0.90705 1.03389 1.03023 1.19909 0.96190 0.91727 0.96925 1.20926 0.94253 0.97195 1.02530 1.21202 0.94200 0.97956 0.98738 1.20924 0.99804 0.91641 1.02527 1.19910 0.91971 0.95945 0.96948 1.20897 0.99910 0.94157 1.02960 1.19867 0.93555 0.93605 1.05428 1.18233 0.79053 0.84068 0.84539 1.90770 1.55208 1.64706 1.31721 1.46386 1.56948 1.24822 1.07625 1.21766 0.94551 0.82154 1.00715 1.18360 0.93526 0.94814 0.87772 1.21828 0.97732 0.95005 1.04279 1.21830 0.96192 0.96545 1.04286 1.21018 1.35723 1.04941 0.92669 0.92387 1.24877 0.95655 0.97431 0.95534 1.69814 1.46741 1.38676 0.97190 0.86522 0.79554 0.83704 0.78155 1.19756 1.21071 1.21065 0.90433 0.90925 0.91128 0.85716 0.85896 0.85713 0.90611 0.90947 0.91042 0.76523 0.92620 0.92616 0.97497 0.89584 0.95434 0.95437 0.89578 0.97494 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.62 36.01 0.35 -1.21 16 2 C -0.05 -0.64 5.91 -104.22 -0.62 -1.25 16 3 C -0.13 -1.46 9.69 -39.64 -0.38 -1.85 16 4 C -0.10 -1.06 10.04 -39.49 -0.40 -1.46 16 5 C -0.13 -1.46 9.69 -39.64 -0.38 -1.85 16 6 C -0.05 -0.64 5.91 -104.22 -0.62 -1.26 16 7 C -0.12 -1.55 9.62 36.01 0.35 -1.21 16 8 C -0.12 -1.88 5.63 -104.97 -0.59 -2.47 16 9 C 0.56 10.18 4.19 -12.33 -0.05 10.13 16 10 O -0.55 -11.91 17.10 5.32 0.09 -11.82 16 11 N -0.71 -12.92 4.96 -61.25 -0.30 -13.22 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 14 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 15 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 16 C -0.50 -13.14 8.01 -34.44 -0.28 -13.41 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.46 9.35 55.43 0.52 -22.94 16 20 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 1.08 7.08 -51.93 -0.37 0.71 16 26 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 28 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.05 7.08 -51.93 -0.37 0.68 16 32 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.40 6.82 6.15 -40.82 -0.25 6.57 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 37 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 41 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 42 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -28.72 338.32 -8.34 -37.07 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.52 Total: 5.71 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.21 Total: -15.50 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.21 Total: -36.17 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.72 -8.34 -37.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315820598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.125 kcal (2) G-P(sol) polarization free energy of solvation -28.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds