Wall clock time and date at job start Mon Mar 30 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.37957 * 120.06993 * 2 1 4 4 C 1.38360 * 120.14382 * 179.74655 * 3 2 1 5 5 C 1.38366 * 120.29302 * 0.27966 * 4 3 2 6 6 C 1.37955 * 120.14134 * 359.95571 * 5 4 3 7 7 C 1.50704 * 120.07323 * 180.02562 * 6 5 4 8 8 C 1.39576 * 120.07437 * 180.23300 * 2 1 3 9 9 C 1.47837 * 120.14496 * 0.02562 * 8 2 1 10 10 O 1.21555 * 119.99948 * 270.22938 * 9 8 2 11 11 N 1.34783 * 120.00157 * 90.23113 * 9 8 2 12 12 C 1.46502 * 119.99911 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47171 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47125 * 299.99589 * 13 12 11 15 15 C 1.53001 * 109.47449 * 59.99370 * 13 12 11 16 16 C 1.50699 * 109.47438 * 179.97438 * 13 12 11 17 17 H 1.08004 * 119.99355 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00377 * 179.97438 * 16 13 12 19 19 N 1.31518 * 119.99978 * 0.02562 * 18 16 13 20 20 Si 1.86800 * 120.00336 * 180.02562 * 18 16 13 21 21 H 1.48498 * 109.47060 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47194 * 120.00334 * 20 18 16 23 23 H 1.48498 * 109.47072 * 240.00476 * 20 18 16 24 24 H 1.08994 * 109.46799 * 89.99624 * 1 2 3 25 25 H 1.08994 * 109.46726 * 209.99869 * 1 2 3 26 26 H 1.08995 * 109.47128 * 329.99791 * 1 2 3 27 27 H 1.08002 * 119.93252 * 0.03110 * 3 2 1 28 28 H 1.08001 * 119.85601 * 180.25892 * 4 3 2 29 29 H 1.07992 * 119.92771 * 179.97438 * 5 4 3 30 30 H 1.09004 * 109.47190 * 90.00112 * 7 6 5 31 31 H 1.09004 * 109.47366 * 210.00157 * 7 6 5 32 32 H 1.09001 * 109.46832 * 330.00176 * 7 6 5 33 33 H 0.96995 * 120.00159 * 359.97438 * 11 9 8 34 34 H 1.09000 * 109.46711 * 299.99565 * 12 11 9 35 35 H 1.09000 * 109.47191 * 59.99407 * 12 11 9 36 36 H 1.08999 * 109.46724 * 59.99925 * 14 13 12 37 37 H 1.08996 * 109.47511 * 180.02562 * 14 13 12 38 38 H 1.09000 * 109.46885 * 300.00442 * 14 13 12 39 39 H 1.09003 * 109.46341 * 60.00184 * 15 13 12 40 40 H 1.08998 * 109.47501 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.47275 * 300.00611 * 15 13 12 42 42 H 0.96993 * 120.00020 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5819 1.1957 0.0053 5 6 4.2814 0.0019 0.0048 6 6 3.6023 -1.1989 -0.0001 7 6 4.3657 -2.4983 -0.0001 8 6 2.2065 -1.2078 -0.0049 9 6 1.4722 -2.4910 -0.0107 10 8 1.1663 -3.0209 1.0396 11 7 1.1420 -3.0732 -1.1806 12 6 0.4139 -4.3445 -1.1862 13 6 0.1668 -4.7842 -2.6307 14 6 -0.6606 -3.7194 -3.3535 15 6 1.5075 -4.9611 -3.3464 16 6 -0.5816 -6.0922 -2.6366 17 1 -0.8542 -6.5625 -1.7033 18 6 -0.9193 -6.6879 -3.8332 19 7 -0.5878 -6.1149 -4.9697 20 14 -1.8477 -8.3089 -3.8405 21 1 -2.1000 -8.7411 -2.4424 22 1 -3.1428 -8.1344 -4.5456 23 1 -1.0386 -9.3395 -4.5393 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6583 2.1292 0.0005 28 1 4.1183 2.1331 0.0095 29 1 5.3613 0.0102 0.0085 30 1 4.5461 -2.8137 1.0276 31 1 3.7843 -3.2614 -0.5176 32 1 5.3189 -2.3596 -0.5102 33 1 1.3858 -2.6502 -2.0187 34 1 1.0036 -5.1032 -0.6717 35 1 -0.5410 -4.2185 -0.6759 36 1 -0.1189 -2.7736 -3.3493 37 1 -0.8370 -4.0329 -4.3824 38 1 -1.6157 -3.5934 -2.8436 39 1 2.0969 -5.7197 -2.8314 40 1 1.3315 -5.2749 -4.3753 41 1 2.0492 -4.0153 -3.3421 42 1 -0.8250 -6.5342 -5.8115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315820598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:16 Heat of formation + Delta-G solvation = -49.296670 kcal Electronic energy + Delta-G solvation = -21637.079040 eV Core-core repulsion = 18580.467607 eV Total energy + Delta-G solvation = -3056.611433 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46014 -39.57439 -38.06177 -35.02505 -34.57690 -33.25146 -32.39802 -28.90141 -27.62367 -27.56332 -27.47762 -26.76047 -24.02371 -21.68431 -21.39744 -20.64109 -18.84313 -17.78382 -17.13792 -16.94681 -16.69504 -16.22881 -15.58196 -15.36432 -14.98257 -14.76045 -14.52527 -14.30636 -14.15640 -14.02130 -13.90851 -13.64498 -13.21650 -13.12810 -12.89674 -12.71257 -12.60359 -12.54980 -12.40001 -12.28270 -12.14577 -11.97997 -11.51156 -11.33649 -10.92559 -10.70070 -10.41499 -10.02627 -9.75315 -9.54050 -8.03270 -6.19178 0.18204 0.39343 1.40965 1.45171 1.54582 1.54772 2.26732 2.48278 2.72687 3.20404 3.68716 3.84587 3.84785 4.05969 4.38041 4.39776 4.40382 4.46224 4.53732 4.65040 4.67035 4.69200 4.74647 4.84274 4.89888 4.94595 5.02930 5.09142 5.12918 5.16210 5.26008 5.31735 5.48836 5.51344 5.53762 5.57631 5.64611 5.66225 6.02040 6.11907 6.18896 6.41585 6.56177 6.84611 7.19147 7.48692 8.95997 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029658 B = 0.004271 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.869276 B = 6554.507331 C = 6730.704698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.062 4.062 3 C -0.128 4.128 4 C -0.092 4.092 5 C -0.128 4.128 6 C -0.062 4.062 7 C -0.122 4.122 8 C -0.153 4.153 9 C 0.563 3.437 10 O -0.589 6.589 11 N -0.700 5.700 12 C 0.147 3.853 13 C 0.052 3.948 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.528 4.528 17 H 0.044 0.956 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.946 3.054 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.081 0.919 25 H 0.039 0.961 26 H 0.096 0.904 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.407 0.593 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.064 0.936 41 H 0.033 0.967 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 15.984 5.450 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.110 4.110 5 C -0.146 4.146 6 C -0.063 4.063 7 C -0.178 4.178 8 C -0.156 4.156 9 C 0.351 3.649 10 O -0.470 6.470 11 N -0.350 5.350 12 C 0.023 3.977 13 C 0.052 3.948 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.566 4.566 17 H 0.062 0.938 18 C -0.170 4.170 19 N -0.538 5.538 20 Si 0.773 3.227 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.172 0.828 28 H 0.179 0.821 29 H 0.172 0.828 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.244 0.756 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.856 15.541 5.969 18.857 hybrid contribution -0.749 -1.315 -0.380 1.560 sum 8.107 14.226 5.589 17.302 Atomic orbital electron populations 1.20893 0.90710 1.03047 1.03160 1.20096 0.96484 0.92067 0.97606 1.21287 0.95002 0.97177 1.01144 1.21691 0.93984 0.99169 0.96156 1.21286 1.01341 0.90841 1.01141 1.20095 0.91269 0.97274 0.97632 1.20901 1.00766 0.93380 1.02787 1.19743 0.94425 0.92329 1.09074 1.18737 0.78012 0.84751 0.83434 1.90730 1.56922 1.66234 1.33133 1.46204 1.56672 1.23811 1.08332 1.21340 0.93865 0.83221 0.99253 1.18353 0.93688 0.94047 0.88749 1.21661 0.97656 0.95950 1.02471 1.21662 0.95968 0.97625 1.02476 1.21273 1.36590 1.06444 0.92320 0.93752 1.25444 0.96352 0.99926 0.95328 1.69913 1.47006 1.39471 0.97372 0.85697 0.78578 0.80663 0.77812 1.20053 1.20677 1.20670 0.90067 0.94159 0.88518 0.82781 0.82107 0.82790 0.90937 0.93557 0.88263 0.75627 0.94220 0.94207 0.94817 0.91761 0.96160 0.96183 0.91754 0.94844 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.97 9.62 71.24 0.69 -2.29 16 2 C -0.06 -1.58 5.91 -19.61 -0.12 -1.70 16 3 C -0.13 -2.38 9.69 22.23 0.22 -2.16 16 4 C -0.09 -1.46 10.04 22.33 0.22 -1.24 16 5 C -0.13 -2.38 9.69 22.23 0.22 -2.17 16 6 C -0.06 -1.59 5.91 -19.61 -0.12 -1.70 16 7 C -0.12 -2.98 9.62 71.24 0.69 -2.30 16 8 C -0.15 -4.64 5.63 -20.09 -0.11 -4.75 16 9 C 0.56 21.20 4.19 86.78 0.36 21.56 16 10 O -0.59 -26.93 17.10 -3.89 -0.07 -27.00 16 11 N -0.70 -26.07 4.96 -465.97 -2.31 -28.38 16 12 C 0.15 6.46 4.50 86.38 0.39 6.85 16 13 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 14 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 15 C -0.12 -5.40 8.08 71.98 0.58 -4.81 16 16 C -0.53 -28.13 8.01 25.60 0.21 -27.93 16 17 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 18 C 0.03 1.55 5.15 84.65 0.44 1.98 16 19 N -0.90 -47.99 9.35 21.45 0.20 -47.79 16 20 Si 0.95 42.74 29.54 68.60 2.03 44.77 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.23 7.08 -2.39 -0.02 1.21 16 26 H 0.10 1.78 8.09 -2.39 -0.02 1.76 16 27 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 28 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 29 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.35 7.08 -2.38 -0.02 1.34 16 32 H 0.10 1.79 8.09 -2.39 -0.02 1.77 16 33 H 0.41 13.79 6.15 -92.71 -0.57 13.22 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 37 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 41 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 42 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 Total: -1.00 -63.88 338.32 4.50 -59.39 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.44 Total: 22.05 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 4.21 Total: -23.03 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -2.11 Total: -76.17 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.07 Total: -27.00 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -63.88 4.50 -59.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315820598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.091 kcal (2) G-P(sol) polarization free energy of solvation -63.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds