Wall clock time and date at job start Mon Mar 30 2020 01:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38235 * 120.00094 * 2 1 4 4 C 1.50706 * 119.99802 * 359.97438 * 3 2 1 5 5 C 1.38231 * 120.00255 * 180.25479 * 3 2 1 6 6 C 1.50697 * 120.00291 * 179.72666 * 5 3 2 7 7 C 1.38241 * 119.99999 * 359.53571 * 5 3 2 8 8 C 1.50694 * 120.00221 * 180.21527 * 7 5 3 9 9 N 1.46501 * 109.47040 * 270.20727 * 8 7 5 10 10 C 1.34773 * 120.00352 * 180.02562 * 9 8 7 11 11 O 1.21691 * 119.99744 * 359.97438 * 10 9 8 12 12 C 1.46373 * 120.00257 * 179.97438 * 10 9 8 13 13 H 1.08000 * 120.00260 * 359.97438 * 12 10 9 14 14 C 1.40050 * 119.99967 * 179.97438 * 12 10 9 15 15 N 1.30674 * 120.00219 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00075 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46654 * 60.00506 * 16 14 12 18 18 H 1.48504 * 109.47252 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47209 * 300.00409 * 16 14 12 20 20 C 1.38237 * 119.99620 * 0.42119 * 7 5 3 21 21 C 1.50696 * 119.99806 * 179.79163 * 20 7 5 22 22 C 1.38235 * 120.00049 * 179.97438 * 2 1 3 23 23 C 1.50701 * 119.99888 * 0.02562 * 22 2 1 24 24 H 1.09004 * 109.47322 * 90.00070 * 1 2 3 25 25 H 1.09001 * 109.47684 * 209.99735 * 1 2 3 26 26 H 1.09000 * 109.47540 * 330.00376 * 1 2 3 27 27 H 1.09001 * 109.46953 * 89.99956 * 4 3 2 28 28 H 1.09000 * 109.47318 * 209.99554 * 4 3 2 29 29 H 1.09000 * 109.47161 * 330.00185 * 4 3 2 30 30 H 1.09001 * 109.47221 * 90.00062 * 6 5 3 31 31 H 1.09001 * 109.47299 * 209.99730 * 6 5 3 32 32 H 1.08995 * 109.46930 * 330.00248 * 6 5 3 33 33 H 1.09004 * 109.46997 * 30.20544 * 8 7 5 34 34 H 1.08996 * 109.47380 * 150.20364 * 8 7 5 35 35 H 0.97008 * 119.99829 * 359.97438 * 9 8 7 36 36 H 0.96996 * 120.00325 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47161 * 270.02107 * 21 20 7 38 38 H 1.09003 * 109.47253 * 30.02055 * 21 20 7 39 39 H 1.09003 * 109.46897 * 150.02028 * 21 20 7 40 40 H 1.08997 * 109.47372 * 90.00153 * 23 22 2 41 41 H 1.09005 * 109.46390 * 210.00161 * 23 22 2 42 42 H 1.08992 * 109.46973 * 329.99329 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 1.4446 2.5023 -0.0006 5 6 3.5804 1.1972 -0.0053 6 6 4.3339 2.5022 -0.0115 7 6 4.2717 0.0000 -0.0009 8 6 5.7786 0.0000 -0.0018 9 7 6.2661 -0.0005 -1.3834 10 6 7.5910 -0.0011 -1.6305 11 8 8.3824 -0.0007 -0.7061 12 6 8.0780 -0.0022 -3.0109 13 1 7.3758 -0.0029 -3.8313 14 6 9.4548 -0.0023 -3.2676 15 7 10.3046 -0.0019 -2.2750 16 14 10.0764 -0.0044 -5.0292 17 1 9.5808 1.2073 -5.7303 18 1 11.5614 -0.0035 -5.0301 19 1 9.5811 -1.2177 -5.7274 20 6 3.5805 -1.1971 0.0000 21 6 4.3340 -2.5022 0.0000 22 6 2.1981 -1.1971 0.0005 23 6 1.4446 -2.5022 0.0005 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.2625 2.8171 1.0270 28 1 2.0339 3.2619 -0.5143 29 1 0.4924 2.3718 -0.5147 30 1 4.5196 2.8195 1.0146 31 1 5.2844 2.3706 -0.5287 32 1 3.7429 3.2605 -0.5250 33 1 6.1423 0.8903 0.5114 34 1 6.1423 -0.8897 0.5121 35 1 5.6353 -0.0011 -2.1203 36 1 11.2581 -0.0023 -2.4528 37 1 4.5154 -2.8170 -1.0277 38 1 5.2866 -2.3717 0.5135 39 1 3.7451 -3.2617 0.5142 40 1 1.2633 -2.8172 -1.0271 41 1 2.0336 -3.2617 0.5148 42 1 0.4921 -2.3718 0.5140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335445236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:45 Heat of formation + Delta-G solvation = -38.648118 kcal Electronic energy + Delta-G solvation = -21412.715309 eV Core-core repulsion = 18356.565632 eV Total energy + Delta-G solvation = -3056.149677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.19933 -37.22897 -34.87928 -34.85077 -32.61239 -31.82295 -29.58117 -29.14566 -28.12552 -26.88501 -25.57908 -24.04436 -23.46740 -19.80954 -19.32609 -19.22174 -17.13820 -16.78739 -15.33240 -14.93126 -14.78162 -14.22338 -13.98146 -13.70253 -13.67998 -13.47981 -13.22344 -12.98542 -12.64343 -12.54641 -12.47741 -12.41670 -12.32541 -12.02082 -11.82415 -11.50097 -11.47796 -11.17208 -11.05682 -10.79615 -10.67575 -10.46722 -10.45222 -10.29689 -10.20344 -8.81556 -8.22783 -8.05188 -7.52283 -7.42770 -6.14991 -4.60520 1.50782 1.55425 3.17686 3.22391 3.24400 3.76782 4.15036 4.62380 4.81522 4.85032 5.00940 5.04770 5.15281 5.18069 5.25071 5.41567 5.44704 5.54096 5.59575 5.65306 5.68091 5.74449 5.75814 5.77362 5.81471 5.90935 5.91890 5.99033 6.04502 6.08462 6.27053 6.33127 6.38550 6.60248 6.64383 6.78084 6.80057 7.06489 7.28693 7.46354 7.97779 8.14081 8.37265 9.05684 9.59078 10.63631 10.82513 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.004349 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.136357 B = 6436.548066 C = 6821.428913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.097 4.097 4 C -0.114 4.114 5 C -0.066 4.066 6 C -0.123 4.123 7 C -0.090 4.090 8 C 0.169 3.831 9 N -0.759 5.759 10 C 0.556 3.444 11 O -0.582 6.582 12 C -0.545 4.545 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.907 3.093 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.066 4.066 21 C -0.120 4.120 22 C -0.097 4.097 23 C -0.115 4.115 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.380 0.620 36 H 0.268 0.732 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.932 -0.022 3.548 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.097 4.097 4 C -0.170 4.170 5 C -0.067 4.067 6 C -0.179 4.179 7 C -0.091 4.091 8 C 0.045 3.955 9 N -0.414 5.414 10 C 0.360 3.640 11 O -0.465 6.465 12 C -0.582 4.582 13 H 0.084 0.916 14 C -0.131 4.131 15 N -0.398 5.398 16 Si 0.731 3.269 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.067 4.067 21 C -0.176 4.176 22 C -0.097 4.097 23 C -0.171 4.171 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.211 0.789 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.122 -0.020 4.319 18.630 hybrid contribution 0.012 0.002 -1.243 1.243 sum -18.110 -0.019 3.077 18.370 Atomic orbital electron populations 1.20833 0.91825 1.02416 1.01954 1.19451 0.95354 0.92099 1.01699 1.19472 0.92938 0.94595 1.02672 1.20829 0.99668 0.94641 1.01880 1.19594 0.92688 0.95039 0.99347 1.20931 1.00889 0.93853 1.02210 1.19847 0.96058 0.91969 1.01185 1.19812 0.86941 1.01235 0.87548 1.46152 1.08260 1.82614 1.04400 1.18214 0.79027 0.76310 0.90494 1.90599 1.54298 1.54984 1.46572 1.20843 0.91907 1.54458 0.91000 0.91575 1.25689 0.96748 0.92645 0.98024 1.70011 1.02472 1.35452 1.31827 0.86458 0.77796 0.79425 0.83193 1.19321 1.20581 1.19320 1.19589 0.92693 0.95055 0.99362 1.20924 1.00165 0.93756 1.02767 1.19461 0.92927 0.94615 1.02662 1.20864 0.99635 0.94583 1.02066 0.91524 0.91498 0.91730 0.91621 0.91244 0.91835 0.91441 0.90218 0.91590 0.92594 0.92393 0.78886 0.92111 0.90900 0.90794 0.91809 0.91478 0.91370 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 8.79 36.00 0.32 -0.76 16 2 C -0.09 -1.10 5.88 -104.63 -0.62 -1.72 16 3 C -0.10 -1.31 5.88 -104.62 -0.62 -1.92 16 4 C -0.11 -1.19 8.79 36.01 0.32 -0.87 16 5 C -0.07 -1.02 5.88 -104.62 -0.62 -1.64 16 6 C -0.12 -1.78 8.78 36.00 0.32 -1.47 16 7 C -0.09 -1.53 5.25 -104.62 -0.55 -2.08 16 8 C 0.17 3.42 4.58 -5.20 -0.02 3.40 16 9 N -0.76 -17.39 5.49 -62.91 -0.35 -17.73 16 10 C 0.56 15.95 7.75 -12.99 -0.10 15.85 16 11 O -0.58 -18.98 15.02 5.20 0.08 -18.90 16 12 C -0.54 -15.56 9.54 -35.63 -0.34 -15.90 16 13 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 14 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 15 N -0.77 -23.24 11.83 55.55 0.66 -22.59 16 16 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 C -0.07 -1.03 5.88 -104.62 -0.62 -1.64 16 21 C -0.12 -1.74 9.20 36.00 0.33 -1.41 16 22 C -0.10 -1.30 5.88 -104.62 -0.62 -1.92 16 23 C -0.12 -1.20 9.20 36.01 0.33 -0.87 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.56 5.95 -51.93 -0.31 0.25 16 26 H 0.06 0.54 6.70 -51.93 -0.35 0.20 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.70 5.94 -51.93 -0.31 0.40 16 29 H 0.06 0.58 6.70 -51.93 -0.35 0.23 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.36 6.67 -51.93 -0.35 1.02 16 32 H 0.07 0.82 5.94 -51.93 -0.31 0.51 16 33 H 0.06 1.19 6.72 -51.93 -0.35 0.84 16 34 H 0.06 1.23 5.95 -51.93 -0.31 0.92 16 35 H 0.38 8.03 8.44 -40.82 -0.34 7.69 16 36 H 0.27 7.37 8.29 -40.82 -0.34 7.04 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.18 5.95 -51.93 -0.31 0.87 16 39 H 0.06 0.76 5.95 -51.93 -0.31 0.45 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.67 5.95 -51.93 -0.31 0.36 16 42 H 0.06 0.57 5.95 -51.93 -0.31 0.26 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -33.94 329.64 -8.11 -42.05 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.87 Total: 7.43 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.57 Total: -10.55 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.31 Total: -40.32 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: 0.08 Total: -18.90 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.94 -8.11 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335445236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.399 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds